mRNA_E-fasciculatus_F_contig14356.3169.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14356.3169.1 vs. uniprot
Match: A0A835Z2V2_9STRA (Sister chromatid cohesion protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2V2_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 2.170e-17 Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1
Query: 1 DKGVSVRKSVVRTLRGVLLWRSSHPRHTAICRALVERAVVVREEDTIRDLIRDTFQEIWFSE 186
D GVSVRKSVVRTLRG L H R + IC ALVER+ +V+EEDTIRD+IRDTFQ++WFSE
Sbjct: 826 DVGVSVRKSVVRTLRGCLSTYPCHKRRSEICSALVERSSIVKEEDTIRDIIRDTFQDLWFSE 887
BLAST of mRNA_E-fasciculatus_F_contig14356.3169.1 vs. uniprot
Match: A0A7R9UFA3_9STRA (Sister chromatid cohesion protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFA3_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 7.810e-10 Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 1 DKGVSVRKSVVRTLRGVLLWRSSHPRHTAICRALVERAVVVREEDTIRDLIRDTFQEIWFSEEDDGAA 204
DKGVSVRKSVV+ L+GVLL ++P+ +C ALV+ + REED++++L+ F +IWF +G A
Sbjct: 230 DKGVSVRKSVVKILQGVLLKFPAYPKRVLLCTALVKSLNMRREEDSVKELVSSIFAKIWFDNAIEGGA 297
BLAST of mRNA_E-fasciculatus_F_contig14356.3169.1 vs. uniprot
Match: A0A7S2RVL6_9STRA (Sister chromatid cohesion protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RVL6_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 2.020e-9 Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1
Query: 1 DKGVSVRKSVVRTLRGVLLWRSSHPRHTAICRALVERAVVVREEDTIRDLIRDTFQEIWFSE 186
D G+SVRK VV+ LRG+L+ P T I ALVER + +EEDTI+D+IRD F+ +WFSE
Sbjct: 805 DLGLSVRKRVVKILRGLLVAHRELPVRTQIHTALVERLLDSQEEDTIKDMIRDLFRFLWFSE 866
BLAST of mRNA_E-fasciculatus_F_contig14356.3169.1 vs. uniprot
Match: A0A151ZH98_9MYCE (Sister chromatid cohesion protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZH98_9MYCE) HSP 1 Score: 63.5 bits (153), Expect = 2.020e-9 Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 1
Query: 1 DKGVSVRKSVVRTLRGVLLWRSSHPRHTAICRALVERAVVVREEDTIRDLIRDTFQEIWFSE 186
DKG+SVRK VV+TL + + +HP+ ICR LV R + ++D+IRDLI TFQ++WFS+
Sbjct: 1025 DKGISVRKRVVKTLNEICTSQPNHPKLPEICRILVSR---INDDDSIRDLILKTFQDLWFSD 1083
BLAST of mRNA_E-fasciculatus_F_contig14356.3169.1 vs. uniprot
Match: F1A4K5_DICPU (Sister chromatid cohesion protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A4K5_DICPU) HSP 1 Score: 62.8 bits (151), Expect = 3.780e-9 Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1
Query: 1 DKGVSVRKSVVRTLRGVLLWRSSHPRHTAICRALVERAVVVREEDTIRDLIRDTFQEIWFSE 186
DKG+SVRK VV+TL + + HP+ ICR LV R V +E+ I+DL+ TFQ++WFSE
Sbjct: 1163 DKGISVRKRVVKTLNEICIHHMQHPKIPFICRVLVTR---VSDEEAIKDLVLKTFQDLWFSE 1221
BLAST of mRNA_E-fasciculatus_F_contig14356.3169.1 vs. uniprot
Match: Q54RK7_DICDI (Sister chromatid cohesion protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54RK7_DICDI) HSP 1 Score: 62.4 bits (150), Expect = 5.160e-9 Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1
Query: 1 DKGVSVRKSVVRTLRGVLLWRSSHPRHTAICRALVERAVVVREEDTIRDLIRDTFQEIWFSE 186
DKG+SVRK VV+TL + L HP+ +CR LV R V +E++I+DL+ TFQ++WFSE
Sbjct: 1226 DKGISVRKRVVKTLNEICLNHMQHPKIPYLCRVLVTR---VSDEESIKDLVLKTFQDLWFSE 1284
BLAST of mRNA_E-fasciculatus_F_contig14356.3169.1 vs. uniprot
Match: A0A8J4PQY8_9MYCE (Sister chromatid cohesion protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PQY8_9MYCE) HSP 1 Score: 62.0 bits (149), Expect = 7.040e-9 Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1
Query: 1 DKGVSVRKSVVRTLRGVLLWRSSHPRHTAICRALVERAVVVREEDTIRDLIRDTFQEIWFSE 186
DKG+SVRK VV+TL + L + +HP+ IC+ LV R + ++D IRDL TFQ++WFS+
Sbjct: 1139 DKGISVRKRVVKTLHDICLAQPNHPKIPEICKVLVTR---ITDDDAIRDLALKTFQDLWFSD 1197
BLAST of mRNA_E-fasciculatus_F_contig14356.3169.1 vs. uniprot
Match: D3BQJ3_POLPP (Sister chromatid cohesion protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BQJ3_POLPP) HSP 1 Score: 58.9 bits (141), Expect = 8.460e-8 Identity = 27/62 (43.55%), Postives = 44/62 (70.97%), Query Frame = 1
Query: 1 DKGVSVRKSVVRTLRGVLLWRSSHPRHTAICRALVERAVVVREEDTIRDLIRDTFQEIWFSE 186
DKG+SVRK VV+TL V L + HP+ +C+ LV R + ++++IR+L+ +TF+++WF E
Sbjct: 1121 DKGISVRKRVVKTLHDVCLSQIQHPKIPQLCKVLVSR---INDDESIRELVINTFKDLWFGE 1179
BLAST of mRNA_E-fasciculatus_F_contig14356.3169.1 vs. uniprot
Match: UPI0006447CFC (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006447CFC) HSP 1 Score: 57.4 bits (137), Expect = 2.940e-7 Identity = 28/64 (43.75%), Postives = 43/64 (67.19%), Query Frame = 1
Query: 1 DKGVSVRKSVVRTLRGVLLWRSSHPRHTAICRALVERAVVVREEDTIRDLIRDTFQEIWFSEED 192
DKG+SVRK VV+TL V L HP+ IC+ LV R + +E++I++L+ TF+++WF + D
Sbjct: 1189 DKGISVRKRVVKTLHDVCLAHIQHPKIPYICKILVGR---ISDEESIKELVVQTFKDLWFGDHD 1249
BLAST of mRNA_E-fasciculatus_F_contig14356.3169.1 vs. uniprot
Match: W7TH99_9STRA (Sister chromatid cohesion protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TH99_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 2.580e-6 Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 67 SHPRHTAICRALVERAVVVREEDTIRDLIRDTFQEIWFS 183
+HP T ICR LV RA +V+EEDT++DL++D+FQ +WFS
Sbjct: 801 THPLRTEICRRLVGRASMVKEEDTVKDLVQDSFQAMWFS 839 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14356.3169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14356.3169.1 >prot_E-fasciculatus_F_contig14356.3169.1 ID=prot_E-fasciculatus_F_contig14356.3169.1|Name=mRNA_E-fasciculatus_F_contig14356.3169.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=110bp DKGVSVRKSVVRTLRGVLLWRSSHPRHTAICRALVERAVVVREEDTIRDLback to top mRNA from alignment at E-fasciculatus_F_contig14356:930..1969+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14356.3169.1 ID=mRNA_E-fasciculatus_F_contig14356.3169.1|Name=mRNA_E-fasciculatus_F_contig14356.3169.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1040bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14356:930..1969+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14356:930..1969+ >mRNA_E-fasciculatus_F_contig14356.3169.1 ID=mRNA_E-fasciculatus_F_contig14356.3169.1|Name=mRNA_E-fasciculatus_F_contig14356.3169.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14356:930..1969+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |