mRNA_E-fasciculatus_F_contig14279.3123.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14279.3123.1
Unique NamemRNA_E-fasciculatus_F_contig14279.3123.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14279.3123.1 vs. uniprot
Match: D7FZY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY2_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.050e-16
Identity = 43/61 (70.49%), Postives = 43/61 (70.49%), Query Frame = 3 
Query:    3 KERFSLFGGRMSAEVPFTGDLPPRIGHQRRRSGGEASTGATSVGSGSSAGLGSMVGLTVWR 185
            KERFSLFGGRMSAEVPFTGDLPPRIGHQRRRSGGEAST                  LTVWR
Sbjct: 2490 KERFSLFGGRMSAEVPFTGDLPPRIGHQRRRSGGEASTXXXXXXXXXXXXXXXXXXLTVWR 2550
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14279.3123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZY2_ECTSI4.050e-1670.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14279contigE-fasciculatus_F_contig14279:179..497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927918.9223473-CDS-E-fasciculatus_F_contig14279:178..4961622927918.9223473-CDS-E-fasciculatus_F_contig14279:178..496Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14279 179..496 +
1695995750.582671-CDS-E-fasciculatus_F_contig14279:178..4961695995750.582671-CDS-E-fasciculatus_F_contig14279:178..496Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14279 179..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14279.3123.1prot_E-fasciculatus_F_contig14279.3123.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14279 179..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14279.3123.1

>prot_E-fasciculatus_F_contig14279.3123.1 ID=prot_E-fasciculatus_F_contig14279.3123.1|Name=mRNA_E-fasciculatus_F_contig14279.3123.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=106bp
SRRGSPCSEGGCPPKSRSQATCLLGLATRGAGRGERRAPGLPASAAAAAR
GSGPWLGSPCGDDSGLLLGGGGVGGLVLRRRFSAPGPLDLPVGRAVTIAA
VGRPAG
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mRNA from alignment at E-fasciculatus_F_contig14279:179..497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14279.3123.1 ID=mRNA_E-fasciculatus_F_contig14279.3123.1|Name=mRNA_E-fasciculatus_F_contig14279.3123.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=319bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14279:179..497+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAAGGAGAGGTTCTCCTTGTTCGGAGGGAGGATGTCCGCCGAAGTCCCG
TTCACAGGCGACCTGCCTCCTAGGATTGGCCACCAGAGGCGCCGGTCGGG
GGGAGAGGCGAGCACCGGGGCTACCAGCGTCGGCAGCGGCAGCAGCGCGG
GGCTCGGGTCCATGGTTGGGCTCACCGTGTGGCGATGACAGCGGACTGCT
GCTCGGCGGTGGGGGAGTAGGGGGGTTGGTTCTACGGAGACGTTTCTCCG
CGCCCGGTCCCCTTGACCTACCTGTTGGACGAGCAGTGACGATCGCGGCA
GTAGGCCGGCCGGCCGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14279:179..497+

>mRNA_E-fasciculatus_F_contig14279.3123.1 ID=mRNA_E-fasciculatus_F_contig14279.3123.1|Name=mRNA_E-fasciculatus_F_contig14279.3123.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14279:179..497+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAAGGAGAGGTTCTCCTTGTTCGGAGGGAGGATGTCCGCCGAAGTCCCG
TTCACAGGCGACCTGCCTCCTAGGATTGGCCACCAGAGGCGCCGGTCGGG
GGGAGAGGCGAGCACCGGGGCTACCAGCGTCGGCAGCGGCAGCAGCGCGG
GGCTCGGGTCCATGGTTGGGCTCACCGTGTGGCGATGACAGCGGACTGCT
GCTCGGCGGTGGGGGAGTAGGGGGGTTGGTTCTACGGAGACGTTTCTCCG
CGCCCGGTCCCCTTGACCTACCTGTTGGACGAGCAGTGACGATCGCGGCA
GTAGGCCGGCCGGCCGGGTCAAGGAGAGGTTCTCCTTGTTCGGAGGGAGG
ATGTCCGCCGAAGTCCCGTTCACAGGCGACCTGCCTCCTAGGATTGGCCA
CCAGAGGCGCCGGTCGGGGGGAGAGGCGAGCACCGGGGCTACCAGCGTCG
GCAGCGGCAGCAGCGCGGGGCTCGGGTCCATGGTTGGGCTCACCGTGTGG
CGATGACAGCGGACTGCTGCTCGGCGGTGGGGGAGTAGGGGGGTTGGTTC
TACGGAGACGTTTCTCCGCGCCCGGTCCCCTTGACCTACCTGTTGGACGA
GCAGTGACGATCGCGGCAGTAGGCCGGCCGGCCGGG
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