mRNA_E-fasciculatus_F_contig14239.3100.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14239.3100.1
Unique NamemRNA_E-fasciculatus_F_contig14239.3100.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14239.3100.1 vs. uniprot
Match: A0A6H5JKL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL9_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 5.270e-64
Identity = 140/189 (74.07%), Postives = 151/189 (79.89%), Query Frame = -2 
Query:    6 VSDRPQLGVAVSPVRFNLTEPHMLGLARFAMDASARLSVVFAGPSSSSSPPQLVRSQHGENTTAVVEVDSATDEPEREQLADVG--GSQA----TAAAAESTDVGAVDVGGGCAAGSGKSDQATAVANGRGAAVPSSPPPEGDRDQSQDLDDASAVSTLPRHQVSNGPRSNNDVTLGEGERQQAGEGMA 554
            VS+RPQLGVAV+PVRFNLTE HMLGLARFAMDAS RL+VVFAGPSSS SPP L RSQHGE+TTAVVEVDSATDEPERE+LA V   GSQA    T A  ES D GA DV    A GS KSDQATAVANGRGAA PS  PPEG RD  Q +++A  VSTLPRHQ+SNGP  NND TLGEG+RQ AGEG+A
Sbjct: 1277 VSERPQLGVAVTPVRFNLTESHMLGLARFAMDASDRLAVVFAGPSSSPSPPHLDRSQHGESTTAVVEVDSATDEPERERLASVSVEGSQAAAVATTAVVESPDAGAGDV----ATGSNKSDQATAVANGRGAAAPSPLPPEGARDPPQGVNEA--VSTLPRHQLSNGPPRNNDATLGEGDRQHAGEGLA 1459
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BLAST of mRNA_E-fasciculatus_F_contig14239.3100.1 vs. uniprot
Match: D8LP20_ECTSI (Vacuolar protein sorting-associated protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP20_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 5.500e-44
Identity = 127/209 (60.77%), Postives = 139/209 (66.51%), Query Frame = -2 
Query:    6 VLSRGQGXXXXXXXXXXXXX-VSDRPQLGVAVSPVRFNLTEPHMLGLARFAMDASARLSVVFAGPSSSSSPPQLVRSQHGENTTAVVEVDSATDEPEREQLAD--VGGSQATAAAAESTDVGAV---DVGGGCAAGSGKSDQATAVANGRGAAVPSSPPPEGDRDQSQDLDDASAVSTLPRHQVSNGPRSNNDVTLGEGERQQAGEGMA 614
            VLSRGQG   XXX   XXX  VS+RPQLGVAVSPVRFNLTE HMLGLARFAMDASARL+VVFAGPSS S PP ++ SQHGE+TTAVV VDSATDEPE E+LA   V GSQA A              DV     AGS K                     EGDR+  Q  +DA AVSTLPRHQ++NGP  NND TLGEG+RQ AGEG+A
Sbjct: 2254 VLSRGQGGGAXXXVVAXXXGGVSERPQLGVAVSPVRFNLTELHMLGLARFAMDASARLAVVFAGPSSLS-PPHVLCSQHGESTTAVVAVDSATDEPEGERLASASVEGSQAAAVXXXXXXXXXXXXXDV----TAGSNKXXXXXXXXXXXXXXXXXXXXXEGDRNPPQGFNDAPAVSTLPRHQLANGPPRNNDATLGEGDRQHAGEGVA 2457
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14239.3100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKL9_9PHAE5.270e-6474.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP20_ECTSI5.500e-4460.77Vacuolar protein sorting-associated protein, putat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14239contigE-fasciculatus_F_contig14239:96..710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size616
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927914.6237526-CDS-E-fasciculatus_F_contig14239:95..7101622927914.6237526-CDS-E-fasciculatus_F_contig14239:95..710Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14239 96..710 +
1695995749.6196291-CDS-E-fasciculatus_F_contig14239:95..7101695995749.6196291-CDS-E-fasciculatus_F_contig14239:95..710Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14239 96..710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14239.3100.1prot_E-fasciculatus_F_contig14239.3100.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14239 96..710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14239.3100.1

>prot_E-fasciculatus_F_contig14239.3100.1 ID=prot_E-fasciculatus_F_contig14239.3100.1|Name=mRNA_E-fasciculatus_F_contig14239.3100.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=205bp
AAAIPSPACCRSPSPSVTSLLERGPFETWCRGRVETAEASSRSCDWSRSP
SGGGEDGTAAPRPFATAVAWSLLPLPAAHPPPTSTAPTSVDSAAAAVACD
PPTSASCSRSGSSVAESTSTTAVVFSPCCERTSWGGDDEEEGPAKTTDSL
AEASIANRARPSMWGSVRLNRTGDTATPSWGRSETPPPPPPAPAPAPPPW
PRDRT
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mRNA from alignment at E-fasciculatus_F_contig14239:96..710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14239.3100.1 ID=mRNA_E-fasciculatus_F_contig14239.3100.1|Name=mRNA_E-fasciculatus_F_contig14239.3100.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=615bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14239:96..710+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGCCGCCATACCCTCGCCCGCCTGCTGCCGCTCGCCCTCGCCAAGCGT
AACGTCGTTGTTGGAACGCGGTCCGTTCGAAACCTGGTGTCGGGGAAGGG
TGGAAACAGCGGAAGCATCATCCAGATCCTGCGATTGGTCCCGGTCTCCT
TCCGGCGGCGGAGAGGATGGCACCGCCGCACCCCGACCGTTTGCCACCGC
CGTCGCCTGGTCGCTCTTGCCGCTCCCAGCGGCGCATCCTCCGCCGACAT
CAACGGCGCCGACATCGGTGGATTCCGCTGCTGCTGCTGTCGCCTGCGAC
CCCCCCACATCCGCTAGCTGTTCCCGCTCAGGCTCGTCGGTCGCCGAGTC
CACTTCTACCACGGCGGTAGTGTTCTCACCATGCTGTGAACGAACGAGTT
GGGGGGGTGACGACGAAGAAGAAGGTCCGGCGAAAACAACAGACAGCCTG
GCGGAAGCGTCCATCGCAAATCGCGCGAGACCGAGCATGTGGGGCTCGGT
GAGGTTGAACCGAACCGGAGACACCGCCACCCCAAGCTGGGGACGATCGG
AGACGCCGCCGCCGCCGCCGCCCGCTCCGGCACCGGCACCGCCGCCTTGG
CCACGCGATAGGACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14239:96..710+

>mRNA_E-fasciculatus_F_contig14239.3100.1 ID=mRNA_E-fasciculatus_F_contig14239.3100.1|Name=mRNA_E-fasciculatus_F_contig14239.3100.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1230bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14239:96..710+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGCCGCCATACCCTCGCCCGCCTGCTGCCGCTCGCCCTCGCCAAGCGT
AACGTCGTTGTTGGAACGCGGTCCGTTCGAAACCTGGTGTCGGGGAAGGG
TGGAAACAGCGGAAGCATCATCCAGATCCTGCGATTGGTCCCGGTCTCCT
TCCGGCGGCGGAGAGGATGGCACCGCCGCACCCCGACCGTTTGCCACCGC
CGTCGCCTGGTCGCTCTTGCCGCTCCCAGCGGCGCATCCTCCGCCGACAT
CAACGGCGCCGACATCGGTGGATTCCGCTGCTGCTGCTGTCGCCTGCGAC
CCCCCCACATCCGCTAGCTGTTCCCGCTCAGGCTCGTCGGTCGCCGAGTC
CACTTCTACCACGGCGGTAGTGTTCTCACCATGCTGTGAACGAACGAGTT
GGGGGGGTGACGACGAAGAAGAAGGTCCGGCGAAAACAACAGACAGCCTG
GCGGAAGCGTCCATCGCAAATCGCGCGAGACCGAGCATGTGGGGCTCGGT
GAGGTTGAACCGAACCGGAGACACCGCCACCCCAAGCTGGGGACGATCGG
AGACGCCGCCGCCGCCGCCGCCCGCTCCGGCACCGGCACCGCCGCCTTGG
CCACGCGATAGGACGGCCGCCGCCATACCCTCGCCCGCCTGCTGCCGCTC
GCCCTCGCCAAGCGTAACGTCGTTGTTGGAACGCGGTCCGTTCGAAACCT
GGTGTCGGGGAAGGGTGGAAACAGCGGAAGCATCATCCAGATCCTGCGAT
TGGTCCCGGTCTCCTTCCGGCGGCGGAGAGGATGGCACCGCCGCACCCCG
ACCGTTTGCCACCGCCGTCGCCTGGTCGCTCTTGCCGCTCCCAGCGGCGC
ATCCTCCGCCGACATCAACGGCGCCGACATCGGTGGATTCCGCTGCTGCT
GCTGTCGCCTGCGACCCCCCCACATCCGCTAGCTGTTCCCGCTCAGGCTC
GTCGGTCGCCGAGTCCACTTCTACCACGGCGGTAGTGTTCTCACCATGCT
GTGAACGAACGAGTTGGGGGGGTGACGACGAAGAAGAAGGTCCGGCGAAA
ACAACAGACAGCCTGGCGGAAGCGTCCATCGCAAATCGCGCGAGACCGAG
CATGTGGGGCTCGGTGAGGTTGAACCGAACCGGAGACACCGCCACCCCAA
GCTGGGGACGATCGGAGACGCCGCCGCCGCCGCCGCCCGCTCCGGCACCG
GCACCGCCGCCTTGGCCACGCGATAGGACG
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