mRNA_E-fasciculatus_F_contig14215.3081.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14215.3081.1
Unique NamemRNA_E-fasciculatus_F_contig14215.3081.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14215.3081.1 vs. uniprot
Match: D7G275_ECTSI (Phosphatidate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G275_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 5.720e-41
Identity = 108/142 (76.06%), Postives = 111/142 (78.17%), Query Frame = 1 
Query:   43 RKPKSGRRKHSARRARGRRTTSDMDESCLASVASVEEGGGARMARASTAAESSTGTPWPSSPSATTTPGAIMSRARSLQDHLGGGSASG--DEGPTTAVAWAIGAEDISGSSGGEGG---GGVTTGSRAGAGGERAPPLMQD 453
            RKPKSGRRKH+ARRARGRR TSDMDESCLASVASVEE GGARM RASTAAESSTGTPWPSSP AT    A+MSRARSLQDHLGGGS     DE PT AVAWAIGAE+ISGSS        GGVTTG    AGG  AP L QD
Sbjct:   96 RKPKSGRRKHNARRARGRRATSDMDESCLASVASVEEAGGARMTRASTAAESSTGTPWPSSPPATAA--AVMSRARSLQDHLGGGSXXXXXDEEPT-AVAWAIGAEEISGSSXXXXXXXXGGVTTG----AGG--APSLTQD 228
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BLAST of mRNA_E-fasciculatus_F_contig14215.3081.1 vs. uniprot
Match: A0A6H5JPH1_9PHAE (LNS2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH1_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.460e-40
Identity = 96/129 (74.42%), Postives = 99/129 (76.74%), Query Frame = 1 
Query:    1 SWWWSWTWGALPVRRKPKSGRRKHSARRARGRRTTSDMDESCLASVASVEEGGGARMARASTAAESSTGTPWPSSPSATTTPGAIMSRARSLQDHLGGGSASG----DEGPTTAVAWAIGAEDISGSSG 375
            SWWWSWTWGALPVR        KH+ARRARGR  TSDMDESCLASVASVEE GGARM RASTAAESSTGTPW SSP AT    A+MSRARSLQDHLG          DE PT AVAWAIGAE+ISGSSG
Sbjct:  348 SWWWSWTWGALPVR--------KHNARRARGRHATSDMDESCLASVASVEEAGGARMTRASTAAESSTGTPWHSSPPATAA--AVMSRARSLQDHLGSXXXXXXXXXDEEPT-AVAWAIGAEEISGSSG 465
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14215.3081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G275_ECTSI5.720e-4176.06Phosphatidate phosphatase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JPH1_9PHAE1.460e-4074.42LNS2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14215contigE-fasciculatus_F_contig14215:695..1427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.5
Seed ortholog evalue4.8e-36
Seed eggNOG ortholog2880.D7G275
KEGG rclassRC00017
KEGG koko:K15728
KEGG ReactionR02239
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
EggNOG free text desc.phosphatidylinositol transporter activity
EggNOG OGsCOG5083@1,KOG2116@2759
EC3.1.3.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons2
Model size454
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927911.612142-CDS-E-fasciculatus_F_contig14215:695..11071622927911.612142-CDS-E-fasciculatus_F_contig14215:695..1107Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14215 696..1107 -
1695995748.6330326-CDS-E-fasciculatus_F_contig14215:695..11071695995748.6330326-CDS-E-fasciculatus_F_contig14215:695..1107Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14215 696..1107 -
1622927911.623276-CDS-E-fasciculatus_F_contig14215:1386..14271622927911.623276-CDS-E-fasciculatus_F_contig14215:1386..1427Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14215 1387..1427 -
1695995748.64537-CDS-E-fasciculatus_F_contig14215:1386..14271695995748.64537-CDS-E-fasciculatus_F_contig14215:1386..1427Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14215 1387..1427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14215.3081.1prot_E-fasciculatus_F_contig14215.3081.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14215 696..1427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14215.3081.1

>prot_E-fasciculatus_F_contig14215.3081.1 ID=prot_E-fasciculatus_F_contig14215.3081.1|Name=mRNA_E-fasciculatus_F_contig14215.3081.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=151bp
SWWWSWTWGALPVRRKPKSGRRKHSARRARGRRTTSDMDESCLASVASVE
EGGGARMARASTAAESSTGTPWPSSPSATTTPGAIMSRARSLQDHLGGGS
ASGDEGPTTAVAWAIGAEDISGSSGGEGGGGVTTGSRAGAGGERAPPLMQ
D
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mRNA from alignment at E-fasciculatus_F_contig14215:695..1427-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14215.3081.1 ID=mRNA_E-fasciculatus_F_contig14215.3081.1|Name=mRNA_E-fasciculatus_F_contig14215.3081.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=733bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14215:695..1427- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCTGGTGGTGGAGTTGGACTTGGGGCGCGCTTCCTGTGAGGTACGAAGC
TTCGGGGTGGGTGGGGGTGATGGTAGGGCGTTTGGAACGCGGGGTCTCGG
CCCTGCTTGTATCATGCCAGTGTTTCGGACCCCCGTATTTGCAAAAGCGT
GGACACAGATGCTCTCGGATGACATCGTTCGGGGGCTCACCGTATTTAGT
TGATTCTTGAGGGGCCTGTACGGTATGCGGCTCGTTCCCCCGAGATACTC
CAAGCATTATCTATTAGCTGCCATCAGTTGACGCATCCCCTCCCCCCCCT
CCCGCCTCCCGATCCCTCAGGAGAAAACCCAAGAGCGGTCGTAGGAAGCA
CAGCGCACGGCGTGCCCGAGGAAGACGCACCACAAGCGACATGGACGAGT
CCTGTCTGGCTTCGGTGGCGAGCGTCGAAGAGGGAGGAGGAGCCAGGATG
GCGAGAGCCTCCACGGCGGCGGAGTCCTCTACGGGCACGCCGTGGCCTTC
GTCGCCGTCGGCGACGACAACGCCGGGAGCGATCATGTCGAGAGCAAGGT
CTCTCCAGGACCACCTGGGCGGCGGCAGCGCTAGCGGTGACGAGGGGCCG
ACGACGGCGGTGGCGTGGGCGATCGGGGCTGAGGATATCAGCGGCAGCAG
CGGCGGTGAAGGCGGCGGCGGGGTGACGACGGGCTCGCGCGCGGGGGCCG
GCGGCGAGCGGGCACCGCCGTTGATGCAGGACA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14215:695..1427-

>mRNA_E-fasciculatus_F_contig14215.3081.1 ID=mRNA_E-fasciculatus_F_contig14215.3081.1|Name=mRNA_E-fasciculatus_F_contig14215.3081.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=906bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14215:695..1427- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCTGGTGGTGGAGTTGGACTTGGGGCGCGCTTCCTGTGAGAGCTGGTGG
TGGAGTTGGACTTGGGGCGCGCTTCCTGTGAGGAGAAAACCCAAGAGCGG
TCGTAGGAAGCACAGCGCACGGCGTGCCCGAGGAAGACGCACCACAAGCG
ACATGGACGAGTCCTGTCTGGCTTCGGTGGCGAGCGTCGAAGAGGGAGGA
GGAGCCAGGATGGCGAGAGCCTCCACGGCGGCGGAGTCCTCTACGGGCAC
GCCGTGGCCTTCGTCGCCGTCGGCGACGACAACGCCGGGAGCGATCATGT
CGAGAGCAAGGTCTCTCCAGGACCACCTGGGCGGCGGCAGCGCTAGCGGT
GACGAGGGGCCGACGACGGCGGTGGCGTGGGCGATCGGGGCTGAGGATAT
CAGCGGCAGCAGCGGCGGTGAAGGCGGCGGCGGGGTGACGACGGGCTCGC
GCGCGGGGGCCGGCGGCGAGCGGGCACCGCCGTTGATGCAGGACGAGAAA
ACCCAAGAGCGGTCGTAGGAAGCACAGCGCACGGCGTGCCCGAGGAAGAC
GCACCACAAGCGACATGGACGAGTCCTGTCTGGCTTCGGTGGCGAGCGTC
GAAGAGGGAGGAGGAGCCAGGATGGCGAGAGCCTCCACGGCGGCGGAGTC
CTCTACGGGCACGCCGTGGCCTTCGTCGCCGTCGGCGACGACAACGCCGG
GAGCGATCATGTCGAGAGCAAGGTCTCTCCAGGACCACCTGGGCGGCGGC
AGCGCTAGCGGTGACGAGGGGCCGACGACGGCGGTGGCGTGGGCGATCGG
GGCTGAGGATATCAGCGGCAGCAGCGGCGGTGAAGGCGGCGGCGGGGTGA
CGACGGGCTCGCGCGCGGGGGCCGGCGGCGAGCGGGCACCGCCGTTGATG
CAGGAC
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