mRNA_E-fasciculatus_F_contig14206.3075.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14206.3075.1
Unique NamemRNA_E-fasciculatus_F_contig14206.3075.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14206.3075.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 2.050e-56
Identity = 119/153 (77.78%), Postives = 130/153 (84.97%), Query Frame = 2 
Query:    2 KVDGDYSESQGGGGRGDGRDSAVTDGSVADVEMSAIEDSKVEGGVEASVVSEPASPKGADGPSATSAVSTGSGVNGPEDVKVEDETDGAEAEEFEERSDLTRMEEGKI--GAKAAGGSEVSPPEGTRLPPATHALSATLPVSGPDDAKGEDGL 454
            KVDG+YSESQG G  GDGR SAVTDGSVADVEMSAIEDSKV+GGVEASVVSEPASPKGADGPS TSA+STGS + GP DVK+EDETDGA+A+E E+ S+L RME+GKI  G+KAAGGSEVSPPEGT LPPATH LS    V G DDAK ED L
Sbjct:  742 KVDGNYSESQGDGVLGDGRGSAVTDGSVADVEMSAIEDSKVDGGVEASVVSEPASPKGADGPSVTSALSTGSVIRGPGDVKLEDETDGADADELEQGSELMRMEDGKIEDGSKAAGGSEVSPPEGTHLPPATHPLSTMSTVGGSDDAKVEDDL 894
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BLAST of mRNA_E-fasciculatus_F_contig14206.3075.1 vs. uniprot
Match: A0A6H5JJ93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ93_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.330e-37
Identity = 90/120 (75.00%), Postives = 98/120 (81.67%), Query Frame = 2 
Query:    2 KVDGDYSESQGGGGRGDGRDSAVTDGSVADVEMSAIEDSKVEGGVEASVVSEPASPKGADGPSATSAVSTGSGVNGPEDVKVEDETDGAEAEEFEERSDLTRMEEGKI--GAKAAGGSEV 355
            KVDG YSESQG    GDGR SAVTDGSVADVEMSA+EDSKV  G EASV SE ASP G DGPSATSAVSTGS +  P DV+VEDETDG EA+EFE+ SDLTRME+G +  G+KAAGGSEV
Sbjct:  395 KVDGHYSESQGDSVLGDGRGSAVTDGSVADVEMSAVEDSKVGDGAEASVTSEAASPHGEDGPSATSAVSTGSEIRSPGDVQVEDETDGVEADEFEQGSDLTRMEDGVVEDGSKAAGGSEV 514
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BLAST of mRNA_E-fasciculatus_F_contig14206.3075.1 vs. uniprot
Match: A0A6H5JL60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL60_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.180e-30
Identity = 85/120 (70.83%), Postives = 89/120 (74.17%), Query Frame = 2 
Query:    2 KVDGDYSESQGGGGRGDGRDSAVTDGSVADVEMSAIEDSKVEGGVEASVVSEPASPKGADGPSATSAVSTGSGVNGPEDVKVEDETDGAEAEEFEERSDLTRMEEGKI--GAKAAGGSEV 355
            KVDG+YS SQG G  GDGR SAVTDGSVADV        KVEGGVEASV SE ASPKGADGPSATS V+ GS    P DVK+EDETDG EA EF   SDLTR E+G I  GAKAAGGSEV
Sbjct:  307 KVDGNYSGSQGDGVLGDGRGSAVTDGSVADVXXXXXXXXKVEGGVEASVTSEAASPKGADGPSATSVVA-GSVARSPGDVKLEDETDGVEAGEFVHESDLTRTEDGNIEDGAKAAGGSEV 425
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14206.3075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LBY3_ECTSI2.050e-5677.78Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JJ93_9PHAE1.330e-3775.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL60_9PHAE1.180e-3070.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14206contigE-fasciculatus_F_contig14206:333..962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue4.1e-38
Seed eggNOG ortholog2880.D8LBY3
EggNOG free text desc.regulation of response to stimulus
EggNOG OGs2R960@2759,COG4886@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size630
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14206.3075.1prot_E-fasciculatus_F_contig14206.3075.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14206 430..789 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927911.0227754-UTR-E-fasciculatus_F_contig14206:332..4291622927911.0227754-UTR-E-fasciculatus_F_contig14206:332..429Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14206 333..429 +
1695995748.2563448-UTR-E-fasciculatus_F_contig14206:332..4291695995748.2563448-UTR-E-fasciculatus_F_contig14206:332..429Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14206 333..429 +
1622927911.0455465-UTR-E-fasciculatus_F_contig14206:789..9621622927911.0455465-UTR-E-fasciculatus_F_contig14206:789..962Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14206 790..962 +
1695995748.2785444-UTR-E-fasciculatus_F_contig14206:789..9621695995748.2785444-UTR-E-fasciculatus_F_contig14206:789..962Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14206 790..962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927911.0332584-CDS-E-fasciculatus_F_contig14206:429..7891622927911.0332584-CDS-E-fasciculatus_F_contig14206:429..789Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14206 430..789 +
1695995748.2686732-CDS-E-fasciculatus_F_contig14206:429..7891695995748.2686732-CDS-E-fasciculatus_F_contig14206:429..789Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14206 430..789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14206.3075.1

>prot_E-fasciculatus_F_contig14206.3075.1 ID=prot_E-fasciculatus_F_contig14206.3075.1|Name=mRNA_E-fasciculatus_F_contig14206.3075.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=120bp
MSAIEDSKVEGGVEASVVSEPASPKGADGPSATSAVSTGSGVNGPEDVKV
EDETDGAEAEEFEERSDLTRMEEGKIGAKAAGGSEVSPPEGTRLPPATHA
LSATLPVSGPDDAKGEDGL*
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mRNA from alignment at E-fasciculatus_F_contig14206:333..962+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14206.3075.1 ID=mRNA_E-fasciculatus_F_contig14206.3075.1|Name=mRNA_E-fasciculatus_F_contig14206.3075.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14206:333..962+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAAGGTGGATGGGGATTATTCCGAGAGTCAAGGTGGCGGTGGTCGTGGAG
ACGGACGAGACAGCGCAGTGACGGACGGATCTGTAGCAGACGTGGAGATG
TCAGCAATCGAGGACAGTAAGGTCGAGGGCGGAGTAGAGGCGAGCGTGGT
TTCTGAGCCCGCATCTCCGAAGGGAGCAGACGGGCCATCCGCCACCTCTG
CCGTTTCGACGGGTTCGGGAGTAAACGGCCCGGAAGATGTCAAAGTGGAG
GATGAAACGGATGGTGCGGAGGCAGAGGAGTTCGAAGAACGGTCGGATTT
GACGAGAATGGAAGAAGGTAAGATTGGGGCCAAGGCTGCAGGAGGTTCTG
AAGTATCACCTCCTGAGGGAACGCGCCTTCCACCCGCAACGCATGCGTTG
TCAGCGACCTTGCCAGTAAGTGGCCCCGACGATGCTAAGGGTGAAGATGG
TTTGTAGGAAGGTGTCGCAGAGGCGGAAGCGGATGGATCGGTAGCAGGAT
GGGTTGAGCGTGATGACAGTGGAGAGCGGTACGGTTGAGGGTGGAGTCAT
GGCAAGAGCATTCGGTGAGCCAGCCGAATGAGCAAAACGTCCACAGCCTC
GAATGCGCTACCCACCGGTTCAGTAGGTGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14206:333..962+

>mRNA_E-fasciculatus_F_contig14206.3075.1 ID=mRNA_E-fasciculatus_F_contig14206.3075.1|Name=mRNA_E-fasciculatus_F_contig14206.3075.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=720bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14206:333..962+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCAGCAATCGAGGACAGTAAGGTCGAGGGCGGAGTAGAGGCGAGCGT
GGTTTCTGAGCCCGCATCTCCGAAGGGAGCAGACGGGCCATCCGCCACCT
CTGCCGTTTCGACGGGTTCGGGAGTAAACGGCCCGGAAGATGTCAAAGTG
GAGGATGAAACGGATGGTGCGGAGGCAGAGGAGTTCGAAGAACGGTCGGA
TTTGACGAGAATGGAAGAAGGTAAGATTGGGGCCAAGGCTGCAGGAGGTT
CTGAAGTATCACCTCCTGAGGGAACGCGCCTTCCACCCGCAACGCATGCG
TTGTCAGCGACCTTGCCAGTAAGTGGCCCCGACGATGCTAAGGGTGAAGA
TGGTTTGTAGATGTCAGCAATCGAGGACAGTAAGGTCGAGGGCGGAGTAG
AGGCGAGCGTGGTTTCTGAGCCCGCATCTCCGAAGGGAGCAGACGGGCCA
TCCGCCACCTCTGCCGTTTCGACGGGTTCGGGAGTAAACGGCCCGGAAGA
TGTCAAAGTGGAGGATGAAACGGATGGTGCGGAGGCAGAGGAGTTCGAAG
AACGGTCGGATTTGACGAGAATGGAAGAAGGTAAGATTGGGGCCAAGGCT
GCAGGAGGTTCTGAAGTATCACCTCCTGAGGGAACGCGCCTTCCACCCGC
AACGCATGCGTTGTCAGCGACCTTGCCAGTAAGTGGCCCCGACGATGCTA
AGGGTGAAGATGGTTTGTAG
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