mRNA_E-fasciculatus_F_contig14165.3052.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14165.3052.1
Unique NamemRNA_E-fasciculatus_F_contig14165.3052.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14165.3052.1 vs. uniprot
Match: D8LRA8_ECTSI (tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA8_ECTSI)

HSP 1 Score: 473 bits (1218), Expect = 3.230e-163
Identity = 236/250 (94.40%), Postives = 241/250 (96.40%), Query Frame = 1
Query:    1 RKSIHVWGRYTKLSRSVPQTPWIKGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDVNVRMLGKGRPFCLELVDSLRSVEEIAACLPSLADAVNAAGGVKNAGGGVAVSRLRMAGPGEFPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALSEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRPEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLGCRADILQLDVTNVEDRWSAAED 750
            RK IH WGRYTKLSRSVPQTPW KGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDV+VRMLGKGRPFCLELVDSLRSV+EIAA LPSLADAVN AGGVKNAGGGVAVSRL+++GPGE PSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKAL EDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMR EWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLL CRADILQLDVTNVEDRWSAAED
Sbjct:  341 RKPIHFWGRYTKLSRSVPQTPWFKGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDVDVRMLGKGRPFCLELVDSLRSVDEIAARLPSLADAVNTAGGVKNAGGGVAVSRLQVSGPGELPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALCEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRAEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLDCRADILQLDVTNVEDRWSAAED 590          
BLAST of mRNA_E-fasciculatus_F_contig14165.3052.1 vs. uniprot
Match: A0A6H5KZN5_9PHAE (tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZN5_9PHAE)

HSP 1 Score: 474 bits (1221), Expect = 6.010e-161
Identity = 237/249 (95.18%), Postives = 240/249 (96.39%), Query Frame = 1
Query:    1 RKSIHVWGRYTKLSRSVPQTPWIKGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDVNVRMLGKGRPFCLELVDSLRSVEEIAACLPSLADAVNAAGGVKNAGGGVAVSRLRMAGPGEFPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALSEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRPEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLGCRADILQLDVTNVEDRWSAAE 747
            RKSIH WGRYTKLSRSVPQTPW KGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDV+VRMLGKGRPFCLELVDSLRSV+EIAA LPSLADAVN AGGVKN GGGVAVSRLR+AGPGE PSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKAL EDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMR EWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLL CRADILQLDVTNVEDRWSAAE
Sbjct:  547 RKSIHFWGRYTKLSRSVPQTPWFKGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDVDVRMLGKGRPFCLELVDSLRSVDEIAARLPSLADAVNTAGGVKNVGGGVAVSRLRVAGPGELPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALCEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRAEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLDCRADILQLDVTNVEDRWSAAE 795          
BLAST of mRNA_E-fasciculatus_F_contig14165.3052.1 vs. uniprot
Match: A0A836CNG6_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG6_9STRA)

HSP 1 Score: 249 bits (636), Expect = 9.670e-75
Identity = 138/256 (53.91%), Postives = 173/256 (67.58%), Query Frame = 1
Query:    1 RKSIHVWGRYTKLSRSVPQTPWIKGF---------YSVQEAVSEPFQAFSGCVEGLLHGAGREDVNVRMLGKGRPFCLELVDSLRSVEEIAACLPSLADAVNAAGGVKNAGGGVAVSRLRMAGPGEFPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALSEDAP-EELVVQQATPIRVLHRRTLLDRPRSIFGMRPEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLGCRADILQLDVTNVEDRWS 738
            R+  +V+GRY KLSRSVPQ+PW  G           SVQE V+ P +A + C E  L GAGRED++VRMLG GRPF LE++DS  + +++A  LP L   VNA  G+ N+ G V VS  ++ G  +  S +Q   EGKRKHYRCVVW SR V + EL  AL    P  +L V+Q+TP+RVLHRR  L R +++  +R   +   FF L L TSAGTY+KEFVHGDLGRTVPS+G+LLGCRADILQLDV  V+DRWS
Sbjct:  423 RQPQYVFGRYRKLSRSVPQSPWTVGRGADAVRIGDASVQEIVAAPLEALARCREVKLAGAGREDMDVRMLGNGRPFVLEVIDSKVTAQQLADALPRLQREVNACTGL-NSEGAVEVSDFKLVGR-DIYSQIQEGAEGKRKHYRCVVWTSRDVSQAELDAALHAHPPGADLEVRQSTPVRVLHRRAALTRVKTVRALRAARVAPRFFVLSLTTSAGTYVKEFVHGDLGRTVPSVGALLGCRADILQLDVVGVDDRWS 676          
BLAST of mRNA_E-fasciculatus_F_contig14165.3052.1 vs. uniprot
Match: A0A8J5Y2V0_DIALT (tRNA pseudouridine(55) synthase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y2V0_DIALT)

HSP 1 Score: 201 bits (511), Expect = 3.980e-58
Identity = 117/248 (47.18%), Postives = 151/248 (60.89%), Query Frame = 1
Query:   10 IHVWGRYTKLSRSVPQTPWI-----KGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDVNVRMLGKGRPFCLELVDS--LRSVEEIAACLPSLADAVNAAGGVKNAGGGVAVSRLRMAGPGEFPSDVQAVGEGK-RKHYRCVVWVSRPVGKEELVKALSEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRPEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLGCRADILQLDVTNVED 729
            + + GRY K SR +PQTPW      +G  SVQE +    Q        + HGAGREDV+VRMLG GRPF +E+ +   L     +   L  L  A+N A         V VS+LR+  P     D+   GE + RK YRCVVW+SR V   E+   L  D   E++++Q TPIRVLHRR LL RPR+++ MR E +N H+  L+L T +GTY+KEFVHGD GRT P++GSLLGC ADILQLDV ++ D
Sbjct:  252 VCIGGRYNKYSREMPQTPWWLDNEKRGISSVQEELQTVLQPAYAASATVFHGAGREDVDVRMLGSGRPFVIEMQEPACLEPGTAVGTPLAELEAAINLASEH------VQVSQLRVV-PSSSIGDLVREGESEHRKAYRCVVWLSRRVSAREVADKL--DGAGEVLLEQRTPIRVLHRRPLLTRPRTVYSMRSELLNGHYLMLDLVTQSGTYVKEFVHGDFGRTHPNVGSLLGCSADILQLDVLSILD 490          
BLAST of mRNA_E-fasciculatus_F_contig14165.3052.1 vs. uniprot
Match: A0A0D2WJ29_CAPO3 (tRNA pseudouridine(55) synthase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WJ29_CAPO3)

HSP 1 Score: 202 bits (515), Expect = 1.550e-57
Identity = 127/259 (49.03%), Postives = 164/259 (63.32%), Query Frame = 1
Query:    1 RKSIHVWGRYTKLSRSVPQTPWI-----KGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDVNVRMLGKGRPFCLELVDSLRS--VEEIAACLPSLADAVNAAGGVKNAGGGVAVSRLRMAGPGEFPSDVQAVGEG---KRKHYRCVVWVSRPVGKEELVKALSEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRPEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLG-CRADILQLDVTNVEDRWSAA 744
            R  I + GRY K SR V Q+P+I     KG  SV E ++ P  A+ G  E  L  +GRED++VRMLG+GRPF LE+ D+ RS    +  A L +L   VN A     AGG V +  L +A      +D+ A+ EG   K+K Y  V+WVSRP+  E++  AL+   PEE+VVQQ TP+RV+HRR +  RPRS++ MR   INEH+  L L+T AGTYIKEF HGD GRT PSIGSLLG C ADI+QLDV +++  W  A
Sbjct:  392 RDPIFIGGRYNKYSRVVSQSPYIVGEERKGDTSVHELIAAPMLAYCGASEIKLSSSGREDMDVRMLGRGRPFVLEIADARRSSLTPDKLAHLQAL---VNDA-----AGGRVHIRDLIVA----QRADIPALNEGEDDKKKLYGAVIWVSRPITAEDIA-ALTR--PEEMVVQQMTPLRVMHRRAICTRPRSVYWMRAHQINEHYLLLCLSTQAGTYIKEFAHGDFGRTAPSIGSLLGNCEADIVQLDVLDIDMPWPPA 635          
BLAST of mRNA_E-fasciculatus_F_contig14165.3052.1 vs. uniprot
Match: A0A7S2WQC3_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQC3_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.880e-55
Identity = 113/254 (44.49%), Postives = 150/254 (59.06%), Query Frame = 1
Query:    1 RKSIHVWGRYTKLSRSVPQTPWI-----KGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDVNVRMLGKGRPFCLELVDSLRSVEEIAACLPSLADAVNAAGGVKNAGGGVAVSRLRMAGPGEFPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALSEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRPEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLGCRADILQLDVTNV--EDRWSA 741
            R+ + + GRY KL+R VPQ+PW      KG  SV+E +    QA  G  E     AGRED++VRMLG GRPF +E++   R     A  +  +  ++N+     N    V V  L+   P     ++      K+K YRC+VWVS+PV  ++L   L  D+  +L V Q TPIRV+HRR+ + R + I  +R  WIN H+FQL++  SAGTYIKEFVHGDLGRT P +G LL C ADI+QLDV  V  E R SA
Sbjct:   65 RQPLFLGGRYRKLARDVPQSPWFIDGQRKGRGSVEECLGHAIQAAFGADEVKFQAAGREDIDVRMLGHGRPFLVEVLQPRRLTALSA--VDQIMRSINSDMTGPNKDQDVEVEALQWV-PRSVEKEMHDGAADKKKGYRCMVWVSKPVTPQDLEARL--DSVADLKVAQDTPIRVVHRRSPMIRDKMIHSLRTSWINSHWFQLDVVASAGTYIKEFVHGDLGRTRPCVGDLLSCEADIVQLDVVEVFMEGRLSA 313          
BLAST of mRNA_E-fasciculatus_F_contig14165.3052.1 vs. uniprot
Match: A0A5A8CYU0_CAFRO (tRNA pseudouridine(55) synthase n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CYU0_CAFRO)

HSP 1 Score: 190 bits (482), Expect = 2.930e-55
Identity = 123/252 (48.81%), Postives = 154/252 (61.11%), Query Frame = 1
Query:    1 RKSIHVWGRYTKLSRSVPQTPWI----KGFY-SVQEAVSEPFQAFSGCVEGLLHGAGREDVNVRMLGKGRPFCLELVDS-LRSVEEIAACLPSLADAVNAAGGVKNAGGGVAVSRLRMAGPGEFPSDVQAVGEG---KRKHYRCVVWVSRPVGKEELVKALSEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRPEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLGCR--ADILQLDVTNV 723
            R+S+ V GRY+K +R V QT W     +G Y SV+E  ++      G  +  LHG+GREDV+VRMLG GRPF LEL    + SV +  A +   A  +N       +  GV V+ LR+A      SDV AV  G   KRK Y  +V     V  E L + L  DA +EL V Q TP+RVLHRR+L+DRP+ I GMR  W+N H+F L L TSAG Y+KEFVHGDLGRT P++G+LLG    ADILQLDV NV
Sbjct:   71 RESLFVRGRYSKTARGVSQTAWRLEGQEGLYRSVEEVAADHLAPLFGAADSRLHGSGREDVDVRMLGGGRPFVLELKQPRISSVSQ--AAIDQAAMRIN------RSPEGVTVTELRLA----TTSDVDAVTAGAGDKRKEYAALVRCRAAVTPEFLRERL--DAVKELAVCQTTPVRVLHRRSLMDRPKVIHGMRTRWVNAHWFVLRLVTSAGAYVKEFVHGDLGRTQPNVGALLGDEGGADILQLDVLNV 308          
BLAST of mRNA_E-fasciculatus_F_contig14165.3052.1 vs. uniprot
Match: A0A5D6XHV3_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHV3_9STRA)

HSP 1 Score: 191 bits (484), Expect = 3.100e-54
Identity = 109/248 (43.95%), Postives = 149/248 (60.08%), Query Frame = 1
Query:    1 RKSIHVWGRYTKLSRSVPQTPWI-----KGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDVNVRMLGKGRPFCLELVDSLRSVEEIAACLPSLADAVNAAGGVKNAGGGVAVSRLRMAGPGEFPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALSEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRPEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLGCRADILQLDVTNVED 729
            R  +++ GRY K  R + Q+PW+      G  SV+EA+ +    +        H AGREDV+VRMLG GRPF LE++D+ +     AA    + D VNAA        G+   R   A   E+ + +QA  + K+K Y CVVW    +  E + K    DA ++L +QQ TP+RVLHRRTL+ RP+ I   + E +N+H+  L L TSAGTY+KEFVHGD GRT+P++ S+LGC ADILQLDV N+ D
Sbjct:  243 RDPVYLQGRYLKFKRGLSQSPWVLEGVRMGESSVEEAIGDIALPYFRGASYKFHTAGREDVDVRMLGNGRPFILEVIDA-KKANLTAAEYKEVEDVVNAANV------GIVEIRHTKASTKEYFAGLQAGADSKKKTYCCVVWSEAELTPEAVAKL---DAIQDLTIQQETPVRVLHRRTLMTRPKVIHSAKCEVLNKHYMLLRLTTSAGTYVKEFVHGDRGRTLPNVSSILGCDADILQLDVENLLD 480          
BLAST of mRNA_E-fasciculatus_F_contig14165.3052.1 vs. uniprot
Match: A0A7S2DMJ9_9EUKA (tRNA pseudouridine(55) synthase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DMJ9_9EUKA)

HSP 1 Score: 181 bits (460), Expect = 2.510e-52
Identity = 109/248 (43.95%), Postives = 148/248 (59.68%), Query Frame = 1
Query:    1 RKSIHVWGRYTKLSRSVPQTPWI-----KGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDVNVRMLGKGRPFCLELVDSLRSVEEIAACLPSLADAVNAAGGVKNAGGGVAVSRLRMAGPGEFPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALSEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRPEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLGCRADILQLDVTNVED 729
            R ++ + GRY K SR +PQ+PWI     K   SV E +++      G  EG  H AGREDV+VRMLG GRPF +EL+ + R+    AA +  L + +NA G ++       +  LR        S ++   E  RK YRCVV +SR +   ++ K    ++  ELV +Q TP+RVLHRRTL+ R R+I  +    +     QL+L T AGTY+KEFVHGD GRT PS+GSLLGC ADI+QLDVT + +
Sbjct:   81 RDAVTLTGRYRKYSRMLPQSPWIVEGGRKCAGSVAECITDLAVPLFGASEGKFHSAGREDVDVRMLGTGRPFMVELL-APRTPYRTAAQIAELQENINACGLIE-------IEGLRECSHAVVSSIMKEGEEAHRKDYRCVVCLSRTLTPADIEKI---NSTRELVTKQLTPMRVLHRRTLMIRERTIHRLDAVVLGPRMLQLDLTTQAGTYVKEFVHGDFGRTDPSLGSLLGCEADIMQLDVTGLTE 317          
BLAST of mRNA_E-fasciculatus_F_contig14165.3052.1 vs. uniprot
Match: K3X1C6_GLOUD (tRNA pseudouridine(55) synthase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1C6_GLOUD)

HSP 1 Score: 184 bits (468), Expect = 7.320e-52
Identity = 111/251 (44.22%), Postives = 150/251 (59.76%), Query Frame = 1
Query:    1 RKSIHVWGRYTKLSRSVPQTPWI-----KGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDVNVRMLGKGRPFCLELVDSLRS---VEEIAACLPSLADAVNAAGGVKNAGGGVAVSRLRMAGPGEFPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALSEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRPEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLGCRADILQLDVTNVED 729
            R  +++ GRY K  R + Q+PW+      G  SV+E + +    +        H AGREDV+VRMLG GRPF LE++D+ ++    EE       + DAVNAA   +NA       R   A   E+ + +QA  + K+K Y CVVW  R +  E + K    DA  +L +QQ TPIRVLHRRTL+ RP+ I   + E +N+H+  L L TSAGTY+KEFVHGD GRT+P++ S+LG  ADILQLDV N+ D
Sbjct:  245 RDPVYLQGRYLKFKRGLSQSPWVLDGVRMGESSVEECIGDIALPYFRGASYKFHTAGREDVDVRMLGNGRPFILEIIDAKKANLTQEEY----QQIQDAVNAAN--ENA----VEIRETKASTKEYFAGLQAGADSKKKTYCCVVWSERELTAEAVAKL---DAIHDLAIQQETPIRVLHRRTLMTRPKVIHEAKCEVLNKHYMLLRLTTSAGTYVKEFVHGDRGRTLPNVSSILGSNADILQLDVENLLD 482          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14165.3052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRA8_ECTSI3.230e-16394.40tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus... [more]
A0A6H5KZN5_9PHAE6.010e-16195.18tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus... [more]
A0A836CNG6_9STRA9.670e-7553.91tRNA pseudouridine(55) synthase n=1 Tax=Tribonema ... [more]
A0A8J5Y2V0_DIALT3.980e-5847.18tRNA pseudouridine(55) synthase n=1 Tax=Diacronema... [more]
A0A0D2WJ29_CAPO31.550e-5749.03tRNA pseudouridine(55) synthase n=2 Tax=Capsaspora... [more]
A0A7S2WQC3_9STRA2.880e-5544.49tRNA pseudouridine(55) synthase n=1 Tax=Rhizochrom... [more]
A0A5A8CYU0_CAFRO2.930e-5548.81tRNA pseudouridine(55) synthase n=3 Tax=Cafeteria ... [more]
A0A5D6XHV3_9STRA3.100e-5443.95tRNA pseudouridine(55) synthase n=1 Tax=Pythium br... [more]
A0A7S2DMJ9_9EUKA2.510e-5243.95tRNA pseudouridine(55) synthase n=1 Tax=Haptolina ... [more]
K3X1C6_GLOUD7.320e-5244.22tRNA pseudouridine(55) synthase n=1 Tax=Globispora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14165contigE-fasciculatus_F_contig14165:2..1363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score477.2
Seed ortholog evalue4.6e-132
Seed eggNOG ortholog2880.D8LRA8
KEGG koko:K07583
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG1258@1,KOG2364@2759
EC5.4.99.25
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size759
Cds size759
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927908.6289227-CDS-E-fasciculatus_F_contig14165:1..6141622927908.6289227-CDS-E-fasciculatus_F_contig14165:1..614Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14165 2..614 +
1695995747.2567651-CDS-E-fasciculatus_F_contig14165:1..6141695995747.2567651-CDS-E-fasciculatus_F_contig14165:1..614Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14165 2..614 +
1622927908.6434543-CDS-E-fasciculatus_F_contig14165:1217..13631622927908.6434543-CDS-E-fasciculatus_F_contig14165:1217..1363Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14165 1218..1363 +
1695995747.2704322-CDS-E-fasciculatus_F_contig14165:1217..13631695995747.2704322-CDS-E-fasciculatus_F_contig14165:1217..1363Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14165 1218..1363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14165.3052.1prot_E-fasciculatus_F_contig14165.3052.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14165 2..1363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14165.3052.1

>prot_E-fasciculatus_F_contig14165.3052.1 ID=prot_E-fasciculatus_F_contig14165.3052.1|Name=mRNA_E-fasciculatus_F_contig14165.3052.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=253bp
RKSIHVWGRYTKLSRSVPQTPWIKGFYSVQEAVSEPFQAFSGCVEGLLHG
AGREDVNVRMLGKGRPFCLELVDSLRSVEEIAACLPSLADAVNAAGGVKN
AGGGVAVSRLRMAGPGEFPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVK
ALSEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRPEWINEHFFQLEL
ATSAGTYIKEFVHGDLGRTVPSIGSLLGCRADILQLDVTNVEDRWSAAED
DC*
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mRNA from alignment at E-fasciculatus_F_contig14165:2..1363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14165.3052.1 ID=mRNA_E-fasciculatus_F_contig14165.3052.1|Name=mRNA_E-fasciculatus_F_contig14165.3052.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1362bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14165:2..1363+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGAAGTCGATCCACGTCTGGGGCCGGTACACCAAGCTCTCCCGGAGCGT CCCGCAGACGCCGTGGATCAAGGGTTTCTACTCCGTGCAGGAGGCGGTCT CCGAACCGTTCCAGGCGTTCTCCGGGTGCGTGGAAGGGCTCCTGCACGGG GCCGGCCGGGAGGACGTCAACGTCCGGATGCTGGGAAAGGGCCGCCCGTT CTGCCTGGAGCTGGTGGACTCCCTCCGGTCCGTTGAGGAGATCGCGGCGT GCTTGCCGTCCCTTGCCGACGCGGTCAACGCCGCCGGGGGCGTCAAGAAC GCCGGCGGCGGCGTCGCCGTGTCCAGGCTCCGGATGGCCGGCCCCGGGGA GTTCCCGAGCGACGTCCAGGCGGTCGGTGAGGGGAAGCGGAAGCACTACC GGTGCGTGGTGTGGGTGTCCAGGCCGGTGGGGAAGGAGGAGCTCGTGAAG GCGCTGTCCGAGGATGCGCCGGAGGAGCTGGTGGTGCAGCAGGCCACGCC CATCCGCGTGCTGCACCGCAGGACGCTGCTCGACAGGCCTAGGTCGATCT TCGGCATGCGCCCGGAGTGGATCAACGAGCACTTTTTCCAGCTGGAGCTC GCCACGTCCGCCGGTGAGAAGAGCCAGACAGGTTTTTTAGTGGAGAGTTG GCGCGTTTTTTTTTGTTGTCCCATGGCGCGTCGCTGTTCGCTTGACTCGT CTGCCGTTAATTTTTTCCCGTTTCCTTTGCGGGTCATCACTCTCGTTGCT GTTGTTAGTGTCAAGACTCTTTGCGATCTTTATCGAACGTGTGCTTTTCG TGTGCTGTGTTGTGGGTGAAAACAAACTGATTATGTACACCCTTGCAGTT GGTAGGTCTACAAGAGCTCAAGGTACCACGTGGTACCCTTGATTAACACT GCCCACTAACAGGACCCGGACTGTTTGACATACACAGCCCGCGTTCTTGT CATTCAGTACAGAATGACAATGGTCCACCACATTACAACGTCTTAACTGC GGCTTACTTCCTTTGGGGCAAGCAACCATCAGCCGGTGTATTGGGGCTTC GCGACAGGATTGTTCGTCGGACGGGACAGGTTGTACAATTGAAACCGAAA GAGACTGGAGCCCCAGTTTGTTCACTGCCTAGCTCTCGAGAGGTGGCAAG TTCTGCAACTTCTTTCCTGTCTCACCCCCCTCCCCCCCCGTCTCTATTCT TGTTTCCCCCCAAAAGGTACGTACATCAAGGAGTTCGTGCACGGGGATCT CGGGCGAACGGTCCCCTCAATTGGAAGCCTCCTCGGCTGCCGGGCGGACA TCCTGCAGCTTGACGTTACGAACGTCGAAGACAGATGGAGCGCAGCGGAG GATGACTGCTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14165:2..1363+

>mRNA_E-fasciculatus_F_contig14165.3052.1 ID=mRNA_E-fasciculatus_F_contig14165.3052.1|Name=mRNA_E-fasciculatus_F_contig14165.3052.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1518bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14165:2..1363+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGAAGTCGATCCACGTCTGGGGCCGGTACACCAAGCTCTCCCGGAGCGT
CCCGCAGACGCCGTGGATCAAGGGTTTCTACTCCGTGCAGGAGGCGGTCT
CCGAACCGTTCCAGGCGTTCTCCGGGTGCGTGGAAGGGCTCCTGCACGGG
GCCGGCCGGGAGGACGTCAACGTCCGGATGCTGGGAAAGGGCCGCCCGTT
CTGCCTGGAGCTGGTGGACTCCCTCCGGTCCGTTGAGGAGATCGCGGCGT
GCTTGCCGTCCCTTGCCGACGCGGTCAACGCCGCCGGGGGCGTCAAGAAC
GCCGGCGGCGGCGTCGCCGTGTCCAGGCTCCGGATGGCCGGCCCCGGGGA
GTTCCCGAGCGACGTCCAGGCGGTCGGTGAGGGGAAGCGGAAGCACTACC
GGTGCGTGGTGTGGGTGTCCAGGCCGGTGGGGAAGGAGGAGCTCGTGAAG
GCGCTGTCCGAGGATGCGCCGGAGGAGCTGGTGGTGCAGCAGGCCACGCC
CATCCGCGTGCTGCACCGCAGGACGCTGCTCGACAGGCCTAGGTCGATCT
TCGGCATGCGCCCGGAGTGGATCAACGAGCACTTTTTCCAGCTGGAGCTC
GCCACGTCCGCCGCGGAAGTCGATCCACGTCTGGGGCCGGTACACCAAGC
TCTCCCGGAGCGTCCCGCAGACGCCGTGGATCAAGGGTTTCTACTCCGTG
CAGGAGGCGGTCTCCGAACCGTTCCAGGCGTTCTCCGGGTGCGTGGAAGG
GCTCCTGCACGGGGCCGGCCGGGAGGACGTCAACGTCCGGATGCTGGGAA
AGGGCCGCCCGTTCTGCCTGGAGCTGGTGGACTCCCTCCGGTCCGTTGAG
GAGATCGCGGCGTGCTTGCCGTCCCTTGCCGACGCGGTCAACGCCGCCGG
GGGCGTCAAGAACGCCGGCGGCGGCGTCGCCGTGTCCAGGCTCCGGATGG
CCGGCCCCGGGGAGTTCCCGAGCGACGTCCAGGCGGTCGGTGAGGGGAAG
CGGAAGCACTACCGGTGCGTGGTGTGGGTGTCCAGGCCGGTGGGGAAGGA
GGAGCTCGTGAAGGCGCTGTCCGAGGATGCGCCGGAGGAGCTGGTGGTGC
AGCAGGCCACGCCCATCCGCGTGCTGCACCGCAGGACGCTGCTCGACAGG
CCTAGGTCGATCTTCGGCATGCGCCCGGAGTGGATCAACGAGCACTTTTT
CCAGCTGGAGCTCGCCACGTCCGCCGGTACGTACATCAAGGAGTTCGTGC
ACGGGGATCTCGGGCGAACGGTCCCCTCAATTGGAAGCCTCCTCGGCTGC
CGGGCGGACATCCTGCAGCTTGACGTTACGAACGTCGAAGACAGATGGAG
CGCAGCGGAGGATGACTGCTAGGTACGTACATCAAGGAGTTCGTGCACGG
GGATCTCGGGCGAACGGTCCCCTCAATTGGAAGCCTCCTCGGCTGCCGGG
CGGACATCCTGCAGCTTGACGTTACGAACGTCGAAGACAGATGGAGCGCA
GCGGAGGATGACTGCTAG
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