mRNA_E-fasciculatus_F_contig14146.3039.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14146.3039.1
Unique NamemRNA_E-fasciculatus_F_contig14146.3039.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14146.3039.1 vs. uniprot
Match: D7G4M7_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M7_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.620e-37
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:   19 FFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHKKGEDYKLFWPEKAEFIRLAVASGAIIVPFSAIGVAD 237
            F +FGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYH+KGEDYKLFWPEKAEF+RLAVAS AIIVPFSAIGVAD
Sbjct:  614 FTKFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHRKGEDYKLFWPEKAEFVRLAVASDAIIVPFSAIGVAD 686
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BLAST of mRNA_E-fasciculatus_F_contig14146.3039.1 vs. uniprot
Match: A0A7S0GWF7_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GWF7_MICPS)

HSP 1 Score: 112 bits (281), Expect = 2.090e-28
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:   19 FFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHKKGEDYKLFWPEKAEFIRLAVASGAIIVPFSAIGVADSLEMVLDGDELLDLP 282
            F +FGAVPVS +N+Y+LL  G+ VLLFPGGV EA+ +KGE Y LFWP K EF+R+A   GA+IVPF+A+G  D  ++V D D++  LP
Sbjct:   82 FSRFGAVPVSGKNLYKLLAAGECVLLFPGGVREAFKRKGEKYALFWPSKPEFVRMAARHGAVIVPFAAVGAEDGFDVVADADDISKLP 169
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BLAST of mRNA_E-fasciculatus_F_contig14146.3039.1 vs. uniprot
Match: C1FGI1_MICCC (PlsC domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FGI1_MICCC)

HSP 1 Score: 115 bits (287), Expect = 7.900e-28
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:   16 LFFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHKKGEDYKLFWPEKAEFIRLAVASGAIIVPFSAIGVADSLEMVLDGDELLDLP 282
            +F  FGAVPVS  N YRLL  G+ VLLFPGGV EA+ ++ E+YKLFWP K EF+R+AV  GA+IVPF+A+G  D +++V D D++  LP
Sbjct:  462 MFTTFGAVPVSGMNFYRLLDAGETVLLFPGGVREAFKRRNEEYKLFWPSKPEFVRMAVRHGAVIVPFAAVGAEDGVDIVADADDIARLP 550
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BLAST of mRNA_E-fasciculatus_F_contig14146.3039.1 vs. uniprot
Match: A0A7S2X168_9CHLO (Hypothetical protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A7S2X168_9CHLO)

HSP 1 Score: 109 bits (272), Expect = 8.310e-28
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:   16 LFFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHKKGEDYKLFWPEKAEFIRLAVASGAIIVPFSAIGVADSLEMVLDGDELLDLP 282
            +F  FGAVPV+PRNM++LLK  + VLLFPGG SEA   KGEDY+LFWPE+ EF+R+A    A IV  S +G+ DSL+++    E+LD P
Sbjct:   23 IFTNFGAVPVTPRNMFKLLKNEEVVLLFPGGASEALKGKGEDYQLFWPEEQEFVRIAARFNATIVTLSGVGIDDSLDILASSKEILDFP 111
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BLAST of mRNA_E-fasciculatus_F_contig14146.3039.1 vs. uniprot
Match: A0A2P6V1X8_9CHLO (Acyltransferase chloroplastic n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V1X8_9CHLO)

HSP 1 Score: 115 bits (287), Expect = 8.330e-28
Identity = 55/85 (64.71%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:   28 FGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHKKGEDYKLFWPEKAEFIRLAVASGAIIVPFSAIGVADSLEMVLDGDELLDLP 282
            FGAVPVS  NM+RLL  G+ VLLFPGGV EAY ++GEDY+LFWPEK+EFIR+A   GA IVPF+A+GV DSL ++ D  +L  LP
Sbjct:  609 FGAVPVSGFNMHRLLASGEAVLLFPGGVREAYKRRGEDYQLFWPEKSEFIRMAARFGATIVPFAAVGVDDSLNIIADSTQLEALP 693
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BLAST of mRNA_E-fasciculatus_F_contig14146.3039.1 vs. uniprot
Match: E1Z887_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z887_CHLVA)

HSP 1 Score: 115 bits (287), Expect = 8.340e-28
Identity = 53/85 (62.35%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:   28 FGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHKKGEDYKLFWPEKAEFIRLAVASGAIIVPFSAIGVADSLEMVLDGDELLDLP 282
            FGAVPVS  NM+RLL+ G++VLLFPGGV EAY ++GE+Y+LFWPEK+EFIR+A   GA IVPF+A+GV DSL ++ D  +L  +P
Sbjct:  620 FGAVPVSAFNMHRLLQAGESVLLFPGGVREAYKRRGEEYRLFWPEKSEFIRMAARFGATIVPFAAVGVDDSLNILADSQQLEAMP 704
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BLAST of mRNA_E-fasciculatus_F_contig14146.3039.1 vs. uniprot
Match: B8BRN2_THAPS (AB hydrolase-1 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRN2_THAPS)

HSP 1 Score: 114 bits (286), Expect = 1.140e-27
Identity = 56/90 (62.22%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:   16 LFFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHKKGEDYKLFWPEK-AEFIRLAVASGAIIVPFSAIGVADSLEMVLDGDELLDLP 282
            LF  FGAV V+P+N YRLL+    VLLFPGGV EA H KGEDY++FWP+K  +F+R+A    A IVP SAIG ADS+++VLD  ELLDLP
Sbjct:  637 LFSMFGAVKVTPKNFYRLLQTNQAVLLFPGGVKEALHGKGEDYEVFWPDKKTDFVRVAARFNATIVPISAIGAADSVDIVLDAKELLDLP 726
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BLAST of mRNA_E-fasciculatus_F_contig14146.3039.1 vs. uniprot
Match: C1MS35_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MS35_MICPC)

HSP 1 Score: 114 bits (284), Expect = 1.990e-27
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:   19 FFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHKKGEDYKLFWPEKAEFIRLAVASGAIIVPFSAIGVADSLEMVLDGDELLDLP 282
            F  FGAVPVS +N Y LL  G+ VLLFPGGV EA+ +K EDYKLFWP K EFIR+AV  GA IVPF+A+G  D +++V D D++  LP
Sbjct:  455 FTTFGAVPVSGKNFYNLLAAGEVVLLFPGGVREAFKRKNEDYKLFWPSKPEFIRMAVRHGATIVPFAAVGAEDGIDIVADSDDVARLP 542
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BLAST of mRNA_E-fasciculatus_F_contig14146.3039.1 vs. uniprot
Match: A0A0K9NWT9_ZOSMR (Esterase/lipase/thioesterase family protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NWT9_ZOSMR)

HSP 1 Score: 108 bits (271), Expect = 2.630e-27
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:   28 FGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHKKGEDYKLFWPEKAEFIRLAVASGAIIVPFSAIGVADSLEMVLDGDELLDLP 282
            FGAVPV+P N Y+L+     VLL+PGG+ E  HKKGE+YKLFWPEK+EFIR+A   GA IVPF A+G  D  E+ LD D+L ++P
Sbjct:   51 FGAVPVTPLNFYQLMSEKQFVLLYPGGLREGLHKKGEEYKLFWPEKSEFIRMASRFGATIVPFGAVGEDDIFELALDFDDLANVP 135
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BLAST of mRNA_E-fasciculatus_F_contig14146.3039.1 vs. uniprot
Match: A0A2P6TRL1_CHLSO (Acyltransferase chloroplastic n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TRL1_CHLSO)

HSP 1 Score: 113 bits (283), Expect = 2.830e-27
Identity = 52/85 (61.18%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:   28 FGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHKKGEDYKLFWPEKAEFIRLAVASGAIIVPFSAIGVADSLEMVLDGDELLDLP 282
            FGAVPVS +NM+RLL+  + VLLFPGGV EAY ++GE+Y+LFWPEK+EFIR+A   GA IVPF+A+GV DSL ++ D  +L  +P
Sbjct:  519 FGAVPVSAKNMHRLLQNKEAVLLFPGGVREAYKRRGEEYQLFWPEKSEFIRMAARFGATIVPFAAVGVDDSLNIIADSQQLEAMP 603
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14146.3039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M7_ECTSI1.620e-3793.15AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A7S0GWF7_MICPS2.090e-2856.82Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
C1FGI1_MICCC7.900e-2857.30PlsC domain-containing protein n=1 Tax=Micromonas ... [more]
A0A7S2X168_9CHLO8.310e-2856.18Hypothetical protein n=1 Tax=Chloropicon primus Ta... [more]
A0A2P6V1X8_9CHLO8.330e-2864.71Acyltransferase chloroplastic n=1 Tax=Micractinium... [more]
E1Z887_CHLVA8.340e-2862.35Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
B8BRN2_THAPS1.140e-2762.22AB hydrolase-1 domain-containing protein n=1 Tax=T... [more]
C1MS35_MICPC1.990e-2760.23Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A0K9NWT9_ZOSMR2.630e-2758.82Esterase/lipase/thioesterase family protein n=1 Ta... [more]
A0A2P6TRL1_CHLSO2.830e-2761.18Acyltransferase chloroplastic n=1 Tax=Chlorella so... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14146contigE-fasciculatus_F_contig14146:613..2145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue5.8e-32
Seed eggNOG ortholog2880.D7G4M7
GOsGO:0003674,GO:0003824,GO:0004144,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010287,GO:0016101,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0019432,GO:0033306,GO:0034308,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046460,GO:0046463,GO:0046486,GO:0071704,GO:1901576,GO:1901615,GO:1903173
EggNOG free text desc.fatty alcohol metabolic process
EggNOG OGs2QQUD@2759,COG0204@1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size282
Cds size282
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14146.3039.1prot_E-fasciculatus_F_contig14146.3039.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14146 613..2145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927905.919266-CDS-E-fasciculatus_F_contig14146:612..7431622927905.919266-CDS-E-fasciculatus_F_contig14146:612..743Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14146 613..743 +
1695995746.3223376-CDS-E-fasciculatus_F_contig14146:612..7431695995746.3223376-CDS-E-fasciculatus_F_contig14146:612..743Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14146 613..743 +
1622927905.9391906-CDS-E-fasciculatus_F_contig14146:1237..13451622927905.9391906-CDS-E-fasciculatus_F_contig14146:1237..1345Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14146 1238..1345 +
1695995746.3350844-CDS-E-fasciculatus_F_contig14146:1237..13451695995746.3350844-CDS-E-fasciculatus_F_contig14146:1237..1345Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14146 1238..1345 +
1622927905.9543562-CDS-E-fasciculatus_F_contig14146:2102..21451622927905.9543562-CDS-E-fasciculatus_F_contig14146:2102..2145Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14146 2103..2145 +
1695995746.3530598-CDS-E-fasciculatus_F_contig14146:2102..21451695995746.3530598-CDS-E-fasciculatus_F_contig14146:2102..2145Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14146 2103..2145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14146.3039.1

>prot_E-fasciculatus_F_contig14146.3039.1 ID=prot_E-fasciculatus_F_contig14146.3039.1|Name=mRNA_E-fasciculatus_F_contig14146.3039.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=94bp
ERSPPLFFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHKKGEDYKL
FWPEKAEFIRLAVASGAIIVPFSAIGVADSLEMVLDGDELLDLP
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mRNA from alignment at E-fasciculatus_F_contig14146:613..2145+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14146.3039.1 ID=mRNA_E-fasciculatus_F_contig14146.3039.1|Name=mRNA_E-fasciculatus_F_contig14146.3039.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1533bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14146:613..2145+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAACGTTCCCCGCCTCTGTTTTTTCAGTTTGGTGCGGTGCCGGTGTCCCC
GCGAAACATGTACCGCCTGCTGAAGAGAGGGGACAACGTGCTGCTCTTCC
CTGGTGGAGTTAGCGAGGCATACCACAAAAAGTGAGCGCTAACGTATGAA
TGCGTCGCAAGCTGTATCGCATGAGGGCGTGGGTGGAGTTGTTGAGGCCC
CGTGCGGGTGGTGGTTAGACGTGTCAAAACAATGGATCACCGGCGTTCTG
TTGATCGGAAAATTCCTATCGAGCATTCGAGATGCTCACAGGGAGACCGA
CCGTTTCGTGGTTTACCCGGGGCGAGACGTACGTACCTGGATCAGGGGTG
CTAACCCTTGGTTGGATGTCGCCACCTGATAGCCGACATCATGGTCGCAT
CGCGAACAAAGCAAGCATCGTTGTACCATGTATTGGTGCCCACCCCATGA
AATGAAGGGGTTTTGCATACAAGTTGTCAATCACTCGTTCTTTTTGGCCC
TTGGCCTGCGGACCGAGTCTCTTTGTGTTACATAAAATACGAGCTGCTGT
CAAAAATGTAGCCTGCAACGTTGGAAAGGCTGAACCGTTATCATGCTGAA
CGACTCATGGATACGCCACACACAGGGGTGAGGACTACAAACTCTTTTGG
CCGGAGAAGGCGGAATTCATTCGCCTTGCCGTCGCCTCCGGCGCTATCAT
CGTCCCCTTCTCCGCCATTGGCGTCGCCGATAGGTACGCGCTCCATGTCC
AGAGAGAGAGAGGGGCGGTTTGAGGAGAATGGGCAGAGCGGGACTCGAAC
GTGTGTGTATGTATGACGACACACATATGCTGGTTAACAAAGTCCAGAGC
ACTTCGCCCGACGTTTAAAAGTCTTGTAAGGGTTGCGAACCGGCCGTCAG
TCTGGCGCAATCATCATTCCGGTGACAAGGATGGTGTGGTGCTTGGTATG
TTAACATGTCCAACACCGCAGAGATGTACATGCCAGAAACGTGGAAGGAT
GGAGGTCGTTCGATAGCAAAGCAACCTGCAAAAGCGTCAACCGTTGCTGC
TTTAAACTGCAAAGTGCGAATACACGTGCATACGCGTTCGTACAATTCCC
GATTTCGTCTGTCAACATCGATCGTGAAATCTTCGAGGCCGTCTCAGCGT
GTTTAACTCTGCGTGGTTTTGAAAAACCGTTGCTGTTACCCAAGGCTATG
TAAGTGTCACACGGTTTGGATGGATGAGAAGATCTTGCTTCCTCTGTCAC
GTAGCTGCCCTTTCAAAGGGCGATCGTTCAAGTTTTTCCAAATCTGTTCC
GCCGCTGATGACGGTTGGATGGTGCTTCATGTTTTTCCGTCGGACAGCTT
TCCAATACTCCGATAAATACGAGGATGCTGTACGGTGTTGAAATTGGCGT
TCAAGGCTGTCTGTCGAGAGGTTTGGAATCGACTTCATCGTGCGGCCGTG
ACGCTCTGTTGTTTGTTGATGGTGATCTATCGTTTCACAGCCTGGAGATG
GTTCTCGACGGGGACGAGCTGCTGGACTTGCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14146:613..2145+

>mRNA_E-fasciculatus_F_contig14146.3039.1 ID=mRNA_E-fasciculatus_F_contig14146.3039.1|Name=mRNA_E-fasciculatus_F_contig14146.3039.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14146:613..2145+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAACGTTCCCCGCCTCTGTTTTTTCAGTTTGGTGCGGTGCCGGTGTCCCC
GCGAAACATGTACCGCCTGCTGAAGAGAGGGGACAACGTGCTGCTCTTCC
CTGGTGGAGTTAGCGAGGCATACCACAAAAAGAACGTTCCCCGCCTCTGT
TTTTTCAGTTTGGTGCGGTGCCGGTGTCCCCGCGAAACATGTACCGCCTG
CTGAAGAGAGGGGACAACGTGCTGCTCTTCCCTGGTGGAGTTAGCGAGGC
ATACCACAAAAAGGGTGAGGACTACAAACTCTTTTGGCCGGAGAAGGCGG
AATTCATTCGCCTTGCCGTCGCCTCCGGCGCTATCATCGTCCCCTTCTCC
GCCATTGGCGTCGCCGATAGGGGTGAGGACTACAAACTCTTTTGGCCGGA
GAAGGCGGAATTCATTCGCCTTGCCGTCGCCTCCGGCGCTATCATCGTCC
CCTTCTCCGCCATTGGCGTCGCCGATAGCCTGGAGATGGTTCTCGACGGG
GACGAGCTGCTGGACTTGCCCCCTGGAGATGGTTCTCGACGGGGACGAGC
TGCTGGACTTGCCC
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