mRNA_E-fasciculatus_F_contig14139.3033.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14139.3033.1
Unique NamemRNA_E-fasciculatus_F_contig14139.3033.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14139.3033.1 vs. uniprot
Match: A0A6H5KYH1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH1_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 6.480e-28
Identity = 75/89 (84.27%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    1 TWAGRTPLHRAASAGHTEVVLRLLAHGVAVDPTDCRHATXXXXXXXXXXWGAARALVREGKASVAAATDEGDTVLHAAAGSGTPPERGG 267
            TWAGRTPLHRAASAGHTEVVLRLLAHGVAVDPTD R A XXXXXXXXXX         EGKASVAAATDEGDTVLHAAAGSGTPP  GG
Sbjct:  269 TWAGRTPLHRAASAGHTEVVLRLLAHGVAVDPTDSRRAXXXXXXXXXXXXXXXXXXXXEGKASVAAATDEGDTVLHAAAGSGTPPCGGG 357
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14139.3033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYH1_9PHAE6.480e-2884.27Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14139contigE-fasciculatus_F_contig14139:2929..3282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927905.5647776-CDS-E-fasciculatus_F_contig14139:2928..32821622927905.5647776-CDS-E-fasciculatus_F_contig14139:2928..3282Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14139 2929..3282 -
1695995746.2263262-CDS-E-fasciculatus_F_contig14139:2928..32821695995746.2263262-CDS-E-fasciculatus_F_contig14139:2928..3282Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14139 2929..3282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14139.3033.1prot_E-fasciculatus_F_contig14139.3033.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14139 2929..3282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14139.3033.1

>prot_E-fasciculatus_F_contig14139.3033.1 ID=prot_E-fasciculatus_F_contig14139.3033.1|Name=mRNA_E-fasciculatus_F_contig14139.3033.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=118bp
TWAGRTPLHRAASAGHTEVVLRLLAHGVAVDPTDCRHATPLHLAAGGGHW
GAARALVREGKASVAAATDEGDTVLHAAAGSGTPPERGGGGTAGHVVKLI
LESGADVDAGNRLGSTG*
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mRNA from alignment at E-fasciculatus_F_contig14139:2929..3282-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14139.3033.1 ID=mRNA_E-fasciculatus_F_contig14139.3033.1|Name=mRNA_E-fasciculatus_F_contig14139.3033.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=354bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14139:2929..3282- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGTGGGCCGGCCGCACTCCTCTTCACCGAGCTGCCTCGGCGGGCCACAC
CGAGGTCGTCCTCCGGCTCCTCGCGCACGGCGTTGCCGTCGACCCCACCG
ACTGCCGCCACGCCACGCCCCTCCACCTCGCCGCCGGCGGGGGGCACTGG
GGGGCGGCCCGGGCGCTTGTTCGGGAGGGGAAAGCCTCCGTGGCGGCGGC
GACGGACGAGGGGGACACGGTGCTGCACGCGGCGGCGGGGTCCGGCACGC
CGCCCGAACGAGGCGGTGGAGGAACCGCCGGGCATGTGGTGAAGCTGATC
TTGGAGTCGGGGGCGGACGTGGACGCGGGCAACCGGCTCGGGTCAACAGG
TTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14139:2929..3282-

>mRNA_E-fasciculatus_F_contig14139.3033.1 ID=mRNA_E-fasciculatus_F_contig14139.3033.1|Name=mRNA_E-fasciculatus_F_contig14139.3033.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14139:2929..3282- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGTGGGCCGGCCGCACTCCTCTTCACCGAGCTGCCTCGGCGGGCCACAC
CGAGGTCGTCCTCCGGCTCCTCGCGCACGGCGTTGCCGTCGACCCCACCG
ACTGCCGCCACGCCACGCCCCTCCACCTCGCCGCCGGCGGGGGGCACTGG
GGGGCGGCCCGGGCGCTTGTTCGGGAGGGGAAAGCCTCCGTGGCGGCGGC
GACGGACGAGGGGGACACGGTGCTGCACGCGGCGGCGGGGTCCGGCACGC
CGCCCGAACGAGGCGGTGGAGGAACCGCCGGGCATGTGGTGAAGCTGATC
TTGGAGTCGGGGGCGGACGTGGACGCGGGCAACCGGCTCGGGTCAACAGG
TTAGACGTGGGCCGGCCGCACTCCTCTTCACCGAGCTGCCTCGGCGGGCC
ACACCGAGGTCGTCCTCCGGCTCCTCGCGCACGGCGTTGCCGTCGACCCC
ACCGACTGCCGCCACGCCACGCCCCTCCACCTCGCCGCCGGCGGGGGGCA
CTGGGGGGCGGCCCGGGCGCTTGTTCGGGAGGGGAAAGCCTCCGTGGCGG
CGGCGACGGACGAGGGGGACACGGTGCTGCACGCGGCGGCGGGGTCCGGC
ACGCCGCCCGAACGAGGCGGTGGAGGAACCGCCGGGCATGTGGTGAAGCT
GATCTTGGAGTCGGGGGCGGACGTGGACGCGGGCAACCGGCTCGGGTCAA
CAGGTTAG
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