mRNA_E-fasciculatus_F_contig1413.3027.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1413.3027.1
Unique NamemRNA_E-fasciculatus_F_contig1413.3027.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1413.3027.1 vs. uniprot
Match: D7G9B9_ECTSI (Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9B9_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.590e-25
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 AGGPLETVVHEGTGFLCDATAEAFGSAIVRLARDPSLGGAMGERGRQRVQEKFSME 168
            +GGPLETVVHE TGFLCDATAEAFGSAIVRLARDPSLGGAMGERGR+RVQE FSME
Sbjct:  408 SGGPLETVVHERTGFLCDATAEAFGSAIVRLARDPSLGGAMGERGRRRVQENFSME 463
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BLAST of mRNA_E-fasciculatus_F_contig1413.3027.1 vs. uniprot
Match: A0A3P8XUC1_ESOLU (Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Esox lucius TaxID=8010 RepID=A0A3P8XUC1_ESOLU)

HSP 1 Score: 76.3 bits (186), Expect = 8.880e-15
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 AGGPLETVVHEGTGFLCDATAEAFGSAIVRLARDPSLGGAMGERGRQRVQEKFSMEV 171
            +GGPLE+VVH  TGFLC+ TAEAF  A+ +L RDP LG  MG+ G++RVQEKFS+E 
Sbjct:  361 SGGPLESVVHGETGFLCEPTAEAFSLAMEKLFRDPQLGRDMGQAGKRRVQEKFSLEA 417
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BLAST of mRNA_E-fasciculatus_F_contig1413.3027.1 vs. uniprot
Match: H2LXS9_ORYLA (Alpha-1,3/1,6-mannosyltransferase ALG2 n=8 Tax=Oryzias TaxID=8089 RepID=H2LXS9_ORYLA)

HSP 1 Score: 72.0 bits (175), Expect = 2.740e-13
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 AGGPLETVVHEGTGFLCDATAEAFGSAIVRLARDPSLGGAMGERGRQRVQEKFSMEV 171
            +GGPLE+V H  TGFLC+ TAEAF  A+ RL RDP L   MG+ GR+RV++KFS+E 
Sbjct:  335 SGGPLESVAHGETGFLCEPTAEAFSQAMERLIRDPHLRRDMGQAGRRRVKDKFSLEA 391
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BLAST of mRNA_E-fasciculatus_F_contig1413.3027.1 vs. uniprot
Match: A0A6P7KW83_BETSP (Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Betta splendens TaxID=158456 RepID=A0A6P7KW83_BETSP)

HSP 1 Score: 71.2 bits (173), Expect = 5.200e-13
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 AGGPLETVVHEGTGFLCDATAEAFGSAIVRLARDPSLGGAMGERGRQRVQEKFSMEV 171
            +GGPLE+V H  TGFLC+ TAEAF  A+ RL R+P L   MG+ GR+RVQ+KFS++ 
Sbjct:  341 SGGPLESVAHGETGFLCEPTAEAFSEAMERLVREPQLHRDMGQAGRRRVQDKFSVQA 397
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1413.3027.1 vs. uniprot
Match: A0A3Q3EZ63_KRYMA (Alpha-1,3/1,6-mannosyltransferase ALG2 n=13 Tax=Aplocheiloidei TaxID=45443 RepID=A0A3Q3EZ63_KRYMA)

HSP 1 Score: 69.3 bits (168), Expect = 2.540e-12
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 AGGPLETVVHEGTGFLCDATAEAFGSAIVRLARDPSLGGAMGERGRQRVQEKFSMEV 171
            +GGPLE+V  E TGFLC+ TA+AF  A+ RL R+P L   MG+ GR+RVQE+FS++ 
Sbjct:  350 SGGPLESVADEETGFLCEPTADAFSKAMERLIREPQLRRDMGQAGRRRVQERFSLQA 406
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BLAST of mRNA_E-fasciculatus_F_contig1413.3027.1 vs. uniprot
Match: A0A667WUT3_9TELE (Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667WUT3_9TELE)

HSP 1 Score: 69.3 bits (168), Expect = 2.580e-12
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 AGGPLETVVHEGTGFLCDATAEAFGSAIVRLARDPSLGGAMGERGRQRVQEKFSMEV 171
            +GGPLE+V    TGFLC+ TAEAF  A+ RL R+P L   MGE GR+RVQEKFS++ 
Sbjct:  369 SGGPLESVGDGETGFLCEPTAEAFSKAMERLVREPQLHRDMGEAGRRRVQEKFSLQA 425
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1413.3027.1 vs. uniprot
Match: A0A3B4B806_9GOBI (Alpha-1,3/1,6-mannosyltransferase ALG2 n=4 Tax=Gobiidae TaxID=8220 RepID=A0A3B4B806_9GOBI)

HSP 1 Score: 68.6 bits (166), Expect = 4.710e-12
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 AGGPLETVVHEGTGFLCDATAEAFGSAIVRLARDPSLGGAMGERGRQRVQEKFSMEV 171
            +GGPLE+V    TGFLC+ TAEAF +A+ RL +DP L   MG+ GR RVQ+KFS+E 
Sbjct:  340 SGGPLESVADGVTGFLCEPTAEAFSAAMERLVKDPHLRKDMGQAGRTRVQDKFSLEA 396
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BLAST of mRNA_E-fasciculatus_F_contig1413.3027.1 vs. uniprot
Match: A0A4W6CKB9_LATCA (Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6CKB9_LATCA)

HSP 1 Score: 68.2 bits (165), Expect = 5.580e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 AGGPLETVVHEGTGFLCDATAEAFGSAIVRLARDPSLGGAMGERGRQRVQEKFSMEV 171
            +GGPLE+V    TGFLC+ TAEAF  A+ RL R+P L   MG+ GR+RVQ+KFS++ 
Sbjct:  274 SGGPLESVADGETGFLCEPTAEAFSKAMERLVREPQLRRDMGQAGRRRVQDKFSLQA 330
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1413.3027.1 vs. uniprot
Match: UPI0014712CF7 (alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI0014712CF7)

HSP 1 Score: 68.2 bits (165), Expect = 6.420e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 AGGPLETVVHEGTGFLCDATAEAFGSAIVRLARDPSLGGAMGERGRQRVQEKFSMEV 171
            +GGPLE+V    TGFLCD TAEAF  A+ RL ++P L   MG+ G++RVQEKFS++ 
Sbjct:  335 SGGPLESVADGETGFLCDPTAEAFSQAMERLVKEPKLCRDMGQAGKRRVQEKFSLQA 391
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1413.3027.1 vs. uniprot
Match: A0A3Q3IDI6_MONAL (Alpha-1,3/1,6-mannosyltransferase ALG2 n=3 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3IDI6_MONAL)

HSP 1 Score: 68.2 bits (165), Expect = 6.520e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 AGGPLETVVHEGTGFLCDATAEAFGSAIVRLARDPSLGGAMGERGRQRVQEKFSMEV 171
            +GGPLE+V    TGFLC+ TAEAF  A+ RL R+P L   MG+ GR+RVQ+KFS++ 
Sbjct:  350 SGGPLESVADGETGFLCEPTAEAFSKAMERLVREPKLRKDMGQAGRRRVQDKFSLQA 406
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1413.3027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9B9_ECTSI2.590e-2592.86Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Ect... [more]
A0A3P8XUC1_ESOLU8.880e-1563.16Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Eso... [more]
H2LXS9_ORYLA2.740e-1359.65Alpha-1,3/1,6-mannosyltransferase ALG2 n=8 Tax=Ory... [more]
A0A6P7KW83_BETSP5.200e-1357.89Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Bet... [more]
A0A3Q3EZ63_KRYMA2.540e-1256.14Alpha-1,3/1,6-mannosyltransferase ALG2 n=13 Tax=Ap... [more]
A0A667WUT3_9TELE2.580e-1259.65Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Myr... [more]
A0A3B4B806_9GOBI4.710e-1257.89Alpha-1,3/1,6-mannosyltransferase ALG2 n=4 Tax=Gob... [more]
A0A4W6CKB9_LATCA5.580e-1256.14Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Lat... [more]
UPI0014712CF76.420e-1256.14alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Tha... [more]
A0A3Q3IDI6_MONAL6.520e-1256.14Alpha-1,3/1,6-mannosyltransferase ALG2 n=3 Tax=Mon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1413contigE-fasciculatus_F_contig1413:17891..18073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue3.9e-21
Seed eggNOG ortholog2880.D7G9B9
Preferred nameALG2
KEGG rclassRC00005,RC00028,RC02748
KEGG koko:K00695,ko:K03843,ko:K12188,ko:K20296
KEGG ReactionR00806,R05973,R06238
KEGG Pathwayko00500,ko00510,ko00513,ko01100,ko04144,map00500,map00510,map00513,map01100,map04144
KEGG ModuleM00055,M00410
GOsGO:0000009,GO:0000030,GO:0000033,GO:0003674,GO:0003824,GO:0004376,GO:0004378,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005856,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010035,GO:0010038,GO:0012505,GO:0015629,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0033164,GO:0033577,GO:0034645,GO:0036211,GO:0042175,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046982,GO:0046983,GO:0047485,GO:0048306,GO:0048471,GO:0050896,GO:0051592,GO:0070085,GO:0071704,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.sucrose synthase activity
EggNOG OGsCOG0438@1,KOG0853@2759
EC2.4.1.13,2.4.1.132,2.4.1.257
COG Functional cat.M
CAZyGT4
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927905.031396-CDS-E-fasciculatus_F_contig1413:17890..180731622927905.031396-CDS-E-fasciculatus_F_contig1413:17890..18073Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1413 17891..18073 -
1695995746.067613-CDS-E-fasciculatus_F_contig1413:17890..180731695995746.067613-CDS-E-fasciculatus_F_contig1413:17890..18073Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1413 17891..18073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1413.3027.1prot_E-fasciculatus_F_contig1413.3027.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1413 17891..18073 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1413.3027.1

>prot_E-fasciculatus_F_contig1413.3027.1 ID=prot_E-fasciculatus_F_contig1413.3027.1|Name=mRNA_E-fasciculatus_F_contig1413.3027.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=61bp
AGGPLETVVHEGTGFLCDATAEAFGSAIVRLARDPSLGGAMGERGRQRVQ
EKFSMEVRCS*
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mRNA from alignment at E-fasciculatus_F_contig1413:17891..18073-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1413.3027.1 ID=mRNA_E-fasciculatus_F_contig1413.3027.1|Name=mRNA_E-fasciculatus_F_contig1413.3027.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=183bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1413:17891..18073- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGGCGGTCCCCTTGAAACCGTCGTTCACGAAGGCACGGGGTTTCTGTG
CGATGCCACCGCGGAGGCGTTCGGTTCCGCCATCGTGCGCCTCGCCCGCG
ACCCCTCTCTCGGCGGAGCCATGGGCGAGAGGGGGCGGCAGCGCGTCCAG
GAGAAGTTCTCGATGGAGGTACGATGTAGTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1413:17891..18073-

>mRNA_E-fasciculatus_F_contig1413.3027.1 ID=mRNA_E-fasciculatus_F_contig1413.3027.1|Name=mRNA_E-fasciculatus_F_contig1413.3027.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=366bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1413:17891..18073- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGGCGGTCCCCTTGAAACCGTCGTTCACGAAGGCACGGGGTTTCTGTG
CGATGCCACCGCGGAGGCGTTCGGTTCCGCCATCGTGCGCCTCGCCCGCG
ACCCCTCTCTCGGCGGAGCCATGGGCGAGAGGGGGCGGCAGCGCGTCCAG
GAGAAGTTCTCGATGGAGGTACGATGTAGTTGAGCAGGCGGTCCCCTTGA
AACCGTCGTTCACGAAGGCACGGGGTTTCTGTGCGATGCCACCGCGGAGG
CGTTCGGTTCCGCCATCGTGCGCCTCGCCCGCGACCCCTCTCTCGGCGGA
GCCATGGGCGAGAGGGGGCGGCAGCGCGTCCAGGAGAAGTTCTCGATGGA
GGTACGATGTAGTTGA
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