mRNA_E-fasciculatus_F_contig14063.2977.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14063.2977.1
Unique NamemRNA_E-fasciculatus_F_contig14063.2977.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14063.2977.1 vs. uniprot
Match: A0A6H5KB17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB17_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 1.550e-48
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 MEGGHHQEDVLVRVSCRMLSNGATIHVVLSNETPSPPLRIENRSSTQTLCYRLGGDAEDNVRLLEPMRWNSLHWVNDDKR 240
            MEGGHHQEDVLVRVSCRMLSNGATIHVVLSNETPSPPLRIENRSSTQTLCYRLGGDAEDNVRLLEPMRWNSLHWVNDDKR
Sbjct: 1033 MEGGHHQEDVLVRVSCRMLSNGATIHVVLSNETPSPPLRIENRSSTQTLCYRLGGDAEDNVRLLEPMRWNSLHWVNDDKR 1112
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14063.2977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KB17_9PHAE1.550e-48100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14063contigE-fasciculatus_F_contig14063:2321..2563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927897.4621944-CDS-E-fasciculatus_F_contig14063:2320..25631622927897.4621944-CDS-E-fasciculatus_F_contig14063:2320..2563Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14063 2321..2563 +
1695995743.1802528-CDS-E-fasciculatus_F_contig14063:2320..25631695995743.1802528-CDS-E-fasciculatus_F_contig14063:2320..2563Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14063 2321..2563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14063.2977.1prot_E-fasciculatus_F_contig14063.2977.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14063 2321..2563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14063.2977.1

>prot_E-fasciculatus_F_contig14063.2977.1 ID=prot_E-fasciculatus_F_contig14063.2977.1|Name=mRNA_E-fasciculatus_F_contig14063.2977.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=81bp
MEGGHHQEDVLVRVSCRMLSNGATIHVVLSNETPSPPLRIENRSSTQTLC
YRLGGDAEDNVRLLEPMRWNSLHWVNDDKR*
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mRNA from alignment at E-fasciculatus_F_contig14063:2321..2563+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14063.2977.1 ID=mRNA_E-fasciculatus_F_contig14063.2977.1|Name=mRNA_E-fasciculatus_F_contig14063.2977.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=243bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14063:2321..2563+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGGCGGGCACCACCAGGAGGACGTGTTGGTCCGGGTGTCCTGCCG
CATGCTGTCCAACGGGGCGACGATCCACGTGGTCCTCTCCAACGAGACGC
CGTCGCCGCCTCTCCGCATCGAGAACCGCTCCTCGACGCAGACCCTGTGC
TACCGTTTGGGTGGAGACGCGGAGGACAACGTGCGGCTGCTGGAGCCCAT
GCGGTGGAACTCGCTTCACTGGGTGAACGACGACAAGCGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14063:2321..2563+

>mRNA_E-fasciculatus_F_contig14063.2977.1 ID=mRNA_E-fasciculatus_F_contig14063.2977.1|Name=mRNA_E-fasciculatus_F_contig14063.2977.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14063:2321..2563+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGGCGGGCACCACCAGGAGGACGTGTTGGTCCGGGTGTCCTGCCG
CATGCTGTCCAACGGGGCGACGATCCACGTGGTCCTCTCCAACGAGACGC
CGTCGCCGCCTCTCCGCATCGAGAACCGCTCCTCGACGCAGACCCTGTGC
TACCGTTTGGGTGGAGACGCGGAGGACAACGTGCGGCTGCTGGAGCCCAT
GCGGTGGAACTCGCTTCACTGGGTGAACGACGACAAGCGGTGAATGGAGG
GCGGGCACCACCAGGAGGACGTGTTGGTCCGGGTGTCCTGCCGCATGCTG
TCCAACGGGGCGACGATCCACGTGGTCCTCTCCAACGAGACGCCGTCGCC
GCCTCTCCGCATCGAGAACCGCTCCTCGACGCAGACCCTGTGCTACCGTT
TGGGTGGAGACGCGGAGGACAACGTGCGGCTGCTGGAGCCCATGCGGTGG
AACTCGCTTCACTGGGTGAACGACGACAAGCGGTGA
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