mRNA_E-fasciculatus_F_contig1404.2962.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1404.2962.1
Unique NamemRNA_E-fasciculatus_F_contig1404.2962.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1404.2962.1 vs. uniprot
Match: D8LIG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG1_ECTSI)

HSP 1 Score: 531 bits (1368), Expect = 3.670e-180
Identity = 316/377 (83.82%), Postives = 329/377 (87.27%), Query Frame = 2 
Query:  188 WRSSPPYTVMTTSGGGSKQEQYGQKNACAAADLEEDLGARSRTSSGXXXXXXXXRSWRGGARGERGTPQRRLSSTALGQQGGWAARAKGLLGGGGAGALFSSPRTDSDDSYDSDXSDEEKAIEEAVERKLQEAIAVGAAAAEAEGSVLGSAGASGRDGGG-VVDMTAAGRGGAVDVPAGISWTALVAVVATQLAFVGLFVWVASAAMREQVVSACMVSPTATALGVAGMVPLLGYGLLLDTWTNWEWVRKIDEATSEVALQLFGSKRQVGKVAGIAIPLSMLVGLCEEFAFRGFLPLILAAKTGLPTAAIVAVSATIFGGLHAATVAYFLTATLSGMFFHGLFLTTGNIFVPIVAHAVYDAIALVRYHVKVTAPKPQ 1315
            WRS P Y+ MT SG GS+++Q GQ+ A AA DLEE LGARSRTSS XXXXXXX R WRGG R ERG+ QRRLSSTALGQQGGWAARAKGLLGG   GALF SPR D DDS DSD   EE+AIEEA ERK+QEAIAVGAAA EA G VLG AGASGRD    VVDMTA+GRGGAVDVP GISW ALVAV ATQLAFVGLFV VASAAMREQVVSACMVSP ATALGVAGMVPLLGYGLLLD WT WEWVRKIDEATSEVALQLFGSKRQ+GKV G+ IPLSMLVGLCEE AFRGFLPLILAAKTGLP AAIV +SATIFG LHAATVAYFLTATLSGMFFHGLFL+TGNIFVPIVAHAVYDAIALVRYHVKVTAPKPQ
Sbjct:    8 WRSRPQYSGMT-SGVGSERKQCGQQTAAAATDLEEGLGARSRTSSXXXXXXXXRRRWRGGVRVERGSLQRRLSSTALGQQGGWAARAKGLLGG--VGALFCSPRADGDDSGDSD---EEQAIEEAFERKIQEAIAVGAAAEEAGGGVLGGAGASGRDXXXXVVDMTASGRGGAVDVPPGISWVALVAVAATQLAFVGLFVLVASAAMREQVVSACMVSPAATALGVAGMVPLLGYGLLLDRWTEWEWVRKIDEATSEVALQLFGSKRQLGKVTGVVIPLSMLVGLCEECAFRGFLPLILAAKTGLPMAAIVGLSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALVRYHVKVTAPKPQ 378
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1404.2962.1 vs. uniprot
Match: D8LIG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG3_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 4.420e-51
Identity = 111/208 (53.37%), Postives = 137/208 (65.87%), Query Frame = 2 
Query:  698 GAVD---VPAGISWTALVAVVATQLAFVGLFVWVASAAMREQVVSACMVSPTATALGVAGMVPLLGYGLLLDTWTNWEWVRKIDEATSEVALQLFGSKRQVGKVAGIAIPLSMLVGLCEEFAFRGFLPLILAAKTGLPTAAIVAVSATIFGGLHAATVAYFLTATLSGMFFHGLFLTTGNIFVPIVAHAVYDAIALVRYHVKVTAPKP 1312
            GAVD      GI+W  LV  +  Q  F G+F  +A  AMR QV S+  V+     +G+ G +PL  YGL L+T  +W WVRK    T    L+LFGSKRQV KVA ++IPLSMLV   EE  FRG LPLILA  T LPTAAIV +S    G LHA ++AYFL ATL+G+FFH L L+TGNIFVP+VAHAV++A ALV  H+K +  +P
Sbjct:  122 GAVDSAGARTGINWRLLVEDILVQPLFFGIFAVLAKPAMRGQVKSSLSVTLHGACVGILGSLPLFAYGLFLETRRDWGWVRKAQATTERAVLKLFGSKRQVTKVAAVSIPLSMLVSASEECGFRGLLPLILATHTSLPTAAIVVLSGIFCGVLHAVSLAYFLNATLNGIFFHCLLLSTGNIFVPMVAHAVHNAFALVHCHIKTSGGEP 329
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1404.2962.1 vs. uniprot
Match: A0A6H5JEH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH8_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 1.500e-43
Identity = 98/203 (48.28%), Postives = 140/203 (68.97%), Query Frame = 2 
Query:  713 PAGISWTALVAVVATQLAFVGLFVWVASAAMREQVVSACMVSPTATALGVAGMVPLLGYGLLLDTWTNWEWVRKIDE-ATSEVA-LQLFGSKRQVGKVAGIAIPLSMLVGLCEEFAFRGFLPLILAAKTGLPTAAIVAVSATIFGGLHAATVAYFLTATLSGMFFHGLFLTTGNIFVPIVAHAVYDAIALVRYHVKVTAPKPQ 1315
            PAGI+WT+++  V  Q+ F+G F W+A+ A+REQ+ S+ ++S     LG AG VP+  YGL L T  NW W+++ ++ A +++  L LFG +RQV +VA +++PL+MLV LCEE  +RG +PL+L AKTGLP AA+V +SA   G  HA T+   + A + GM+ H L L+T +I VPIVAHAV+DAI  V  H+K TA +PQ
Sbjct:  141 PAGINWTSILLSVVDQVLFLGFFAWLATPAIREQLRSSFVLSFPGIGLGAAGAVPMFVYGLYLGT-QNWPWLKRHEQKAAADIKDLNLFGRRRQVARVAVVSVPLAMLVALCEECVYRGLVPLLLVAKTGLPVAAVVGISAVFCGARHAGTLGSAIDAAVLGMYVHCLLLSTRSILVPIVAHAVFDAILFVVGHLKETA-RPQ 341
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1404.2962.1 vs. uniprot
Match: A0A6H5JG43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG43_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.240e-24
Identity = 58/96 (60.42%), Postives = 72/96 (75.00%), Query Frame = 2 
Query: 1025 MLVGLCEEFAFRGFLPLILAAKTGLPTAAIVAVSATIFGGLHAATVAYFLTATLSGMFFHGLFLTTGNIFVPIVAHAVYDAIALVRYHVKVTAPKP 1312
            M+V + EE  FRGFLPLILA  T LPTAAIV +S    G LHA ++AYFL ATL+G+FFH L L+TGNI VP+VAHAV++A ALV  H+K +  +P
Sbjct:    1 MIVSVSEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGVLHAVSLAYFLNATLNGIFFHCLLLSTGNILVPMVAHAVHNAFALVHCHLKTSGGEP 96
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1404.2962.1 vs. uniprot
Match: A0A835ZC13_9STRA (CAAX protease self-immunity-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC13_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.060e-14
Identity = 59/143 (41.26%), Postives = 83/143 (58.04%), Query Frame = 2 
Query:  857 GVAGMVPLLGYGLLLDTWTNWEWVRKIDEATSEVALQLFGSKRQVGKVAGI--AIPLSMLVGLCEEFAFRGFLPLILAAKTGLPTAAIVAVSATIFGGLHAATVAYFLTATLSGMFFHGLFLTTGNIFVPIVAHAVYDAIALV 1279
            GV G +P+ G   LL+  T W WV++I E T    + L G  +  G + G+  A+ + +  G+ EE  FRG L   L  +  L T A VA SA +FG LHA T  Y + A ++G +F  L+L +GN+ VPIVAHAVYD  A++
Sbjct:   37 GVLGALPVAGVMALLEI-TQWGWVQRISERTRTFLITLLG--KDGGGIFGLFFALGVGIAAGVGEELMFRGLLQGGL--QRYLSTEAAVAASAVVFGLLHAVTPMYAVCAGITGAYFSLLWLWSGNLVVPIVAHAVYDIGAML 174
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1404.2962.1 vs. uniprot
Match: K0TIM6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TIM6_THAOC)

HSP 1 Score: 82.0 bits (201), Expect = 5.920e-13
Identity = 52/153 (33.99%), Postives = 83/153 (54.25%), Query Frame = 2 
Query:  833 VSPTATALGVAGMVPLLGYGLLLDTWTNWE-WVRKIDEATSEVALQLFGSKRQVGKVAGIAIPLSMLVGLCEEFAFRGFLPLILAAKTGLPTAAIVAVSATIFGGLHAATVAYFLTATLSGMFFHGLFLTTGNIFVPIVAHAVYDAIALVRYH 1288
            V+P A   G+   VPL G   ++     +   ++ + +AT    L + G KR++G     +I L +  G+ EE  FRG    +L+ K G   +A+  +S  +FG LHA T  Y L A  + +FF  +++TTGN+ +P+VAH +YD  AL+  H
Sbjct:  195 VNPAAILQGLQYCVPLFGLAGIMRVIEPYSPALQGVTKATERTVLFVMGKKRRLGFALAFSILLGLCAGVGEELLFRGVFQTLLSTKLGSSNSAL-CISGVVFGLLHAVTPLYALLAGAASVFFGYIYITTGNLAIPMVAHTIYDVGALIWAH 346
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1404.2962.1 vs. uniprot
Match: A0A1F3ACK4_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_12 TaxID=1797224 RepID=A0A1F3ACK4_9PROT)

HSP 1 Score: 72.8 bits (177), Expect = 1.040e-10
Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 2 
Query:  851 ALGVAGMVPLLGYGLLLDTWTNWEWVRKIDEATSEVALQLFGSKRQVGKVAGIAIPLSMLVGLCEEFAFRGFLPLILAAKTGLPTAAIVAVSATIFGGLHAATVAYFLTATLSGMFFHGLFLTTGNIFVPIVAHAVYDAIA 1273
            A G+A ++PL    LLL  +   +W    +   S++    F +    G      + L+++ G+ EE  FRG L  I+  + G+  AA +A ++ IFG LHA TV Y + AT+ G +F  LFL TG++  PIVAHAVYD IA
Sbjct:   60 AFGLAAVMPL---ALLLRWFMKTKWRPLAEFRASQLE---FFAGIGFGLTRPRIVTLAIIAGVSEELMFRGVLQEIIDRRFGI--AAAIAATSMIFGLLHARTVLYAVIATMVGAYFSLLFLATGSLIAPIVAHAVYDFIA 192
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BLAST of mRNA_E-fasciculatus_F_contig1404.2962.1 vs. uniprot
Match: A0A5Q4GZ09_9GAMM (CPBP family intramembrane metalloprotease n=1 Tax=Wenzhouxiangella sp. TaxID=1979961 RepID=A0A5Q4GZ09_9GAMM)

HSP 1 Score: 70.1 bits (170), Expect = 5.670e-10
Identity = 50/144 (34.72%), Postives = 80/144 (55.56%), Query Frame = 2 
Query:  860 VAGMVPLLGYGLLLDTWTNWEWVRKIDEATSEVALQLFGSKRQVGKVAGIAIPLSMLVGLCEEFAFRGFLPLILAAKTGLPTAAIVAVSATIFGGLHAATVAYFLTATLSGMFFHGLFLTTGNIFVPIVAHAVYDAIALVRYHV 1291
            V G +PLL  G  L   ++W W+R++     E+   LF          G    +++L G+ EE  FRG +   L+   G P  A++A S  +FG +HA T AYF+ AT+ G++   ++L TGN+ +PI+ H +YD + L RY++
Sbjct:   55 VLGTLPLLLAGWWLFR-SSWAWMRELKRLVQEMVTLLFRDAPP-----GTVFLVALLAGVGEELLFRGVVQGGLSGLIG-PWGALLAASL-LFGAMHALTRAYFVVATIMGLYLGLIYLWTGNLLIPILIHFLYDWVVL-RYYL 189
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1404.2962.1 vs. uniprot
Match: A0A845VI64_9GAMM (CPBP family intramembrane metalloprotease n=2 Tax=Wenzhouxiangella limi TaxID=2707351 RepID=A0A845VI64_9GAMM)

HSP 1 Score: 65.5 bits (158), Expect = 2.240e-8
Identity = 48/145 (33.10%), Postives = 78/145 (53.79%), Query Frame = 2 
Query:  857 GVAGMVPLLGYGLLLDTWTNWEWVRKIDEATSEVALQLFGSKRQVGKVAGIAIPLSMLVGLCEEFAFRGFLPLILAAKTGLPTAAIVAVSATIFGGLHAATVAYFLTATLSGMFFHGLFLTTGNIFVPIVAHAVYDAIALVRYHV 1291
            G+ G + LL  G  L    NW WV  +     E  + LF          G  + +++L G+ EE  FRG +   L    G P  A+ A+++ +FG +HA + AYF+ AT+ G++   ++L TGN+ +PI+ H +YD + L RY++
Sbjct:   57 GMGGALLLLAAGWWLHAM-NWRWVEALRRFMREALVPLFRDAPP-----GTLLMVALLAGVGEELLFRGVIQGGLDGVIG-PWPAL-ALASLLFGAMHALSRAYFVLATVMGLYMGLVYLWTGNLLIPILIHFLYDWVVL-RYYL 192
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1404.2962.1 vs. uniprot
Match: A0A5Q4G8J5_9GAMM (CPBP family intramembrane metalloprotease n=1 Tax=Wenzhouxiangellaceae bacterium TaxID=2448046 RepID=A0A5Q4G8J5_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 2.370e-8
Identity = 48/144 (33.33%), Postives = 78/144 (54.17%), Query Frame = 2 
Query:  854 LGVAGMVPLLGYGLLLDTWTNWEWVRKIDEATSEVALQLFGSKRQVGKVAGIAIPLSMLVGLCEEFAFRGFLPLILAAKTGLPTAAIVAVSATIFGGLHAATVAYFLTATLSGMFFHGLFLTTGNIFVPIVAHAVYDAIALVRY 1285
            +G+   +PL+  GL+   W   +W+ ++     EV + +F   R       + + +++  G+ EE  FRG +   L    G P   ++A S  +FG +HA + AYFL ATL+G++   L+L TGN+ V I+ H +YD IAL  Y
Sbjct:   61 IGLVATLPLV-LGLVALGWVRAKWIEELQRFMREVVVPMFAGARW-----WMLMLVALAAGIGEELLFRGVIQAGLGDWIG-PGFGLLAASL-LFGLVHAMSRAYFLLATLAGLYLGLLYLWTGNLLVVILVHFLYDWIALYIY 196
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1404.2962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIG1_ECTSI3.670e-18083.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIG3_ECTSI4.420e-5153.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEH8_9PHAE1.500e-4348.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG43_9PHAE2.240e-2460.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZC13_9STRA2.060e-1441.26CAAX protease self-immunity-domain-containing prot... [more]
K0TIM6_THAOC5.920e-1333.99Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A1F3ACK4_9PROT1.040e-1038.30Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A5Q4GZ09_9GAMM5.670e-1034.72CPBP family intramembrane metalloprotease n=1 Tax=... [more]
A0A845VI64_9GAMM2.240e-833.10CPBP family intramembrane metalloprotease n=2 Tax=... [more]
A0A5Q4G8J5_9GAMM2.370e-833.33CPBP family intramembrane metalloprotease n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1404contigE-fasciculatus_F_contig1404:12455..17278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog159749.K0TIM6
EggNOG free text desc.CAAX protease self-immunity
EggNOG OGs2E4JX@1,2SBFQ@2759,2XCVU@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCAAX amino terminal protease
Ec32 orthologEc-18_003810.1
Exons6
Model size2498
Cds size1278
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1404.2962.1prot_E-fasciculatus_F_contig1404.2962.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1404 13668..17238 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927895.840008-UTR-E-fasciculatus_F_contig1404:12454..132061622927895.840008-UTR-E-fasciculatus_F_contig1404:12454..13206Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1404 12455..13206 -
1695995742.5223346-UTR-E-fasciculatus_F_contig1404:12454..132061695995742.5223346-UTR-E-fasciculatus_F_contig1404:12454..13206Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1404 12455..13206 -
1622927895.8536463-UTR-E-fasciculatus_F_contig1404:13239..136671622927895.8536463-UTR-E-fasciculatus_F_contig1404:13239..13667Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1404 13240..13667 -
1695995742.5319445-UTR-E-fasciculatus_F_contig1404:13239..136671695995742.5319445-UTR-E-fasciculatus_F_contig1404:13239..13667Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1404 13240..13667 -
1622927895.9425707-UTR-E-fasciculatus_F_contig1404:17238..172781622927895.9425707-UTR-E-fasciculatus_F_contig1404:17238..17278Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1404 17239..17278 -
1695995742.5920992-UTR-E-fasciculatus_F_contig1404:17238..172781695995742.5920992-UTR-E-fasciculatus_F_contig1404:17238..17278Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1404 17239..17278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927895.8675785-CDS-E-fasciculatus_F_contig1404:13667..136911622927895.8675785-CDS-E-fasciculatus_F_contig1404:13667..13691Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1404 13668..13691 -
1695995742.542549-CDS-E-fasciculatus_F_contig1404:13667..136911695995742.542549-CDS-E-fasciculatus_F_contig1404:13667..13691Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1404 13668..13691 -
1622927895.8822784-CDS-E-fasciculatus_F_contig1404:14118..142711622927895.8822784-CDS-E-fasciculatus_F_contig1404:14118..14271Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1404 14119..14271 -
1695995742.550955-CDS-E-fasciculatus_F_contig1404:14118..142711695995742.550955-CDS-E-fasciculatus_F_contig1404:14118..14271Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1404 14119..14271 -
1622927895.8966777-CDS-E-fasciculatus_F_contig1404:14859..150121622927895.8966777-CDS-E-fasciculatus_F_contig1404:14859..15012Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1404 14860..15012 -
1695995742.5609286-CDS-E-fasciculatus_F_contig1404:14859..150121695995742.5609286-CDS-E-fasciculatus_F_contig1404:14859..15012Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1404 14860..15012 -
1622927895.9113133-CDS-E-fasciculatus_F_contig1404:15805..159871622927895.9113133-CDS-E-fasciculatus_F_contig1404:15805..15987Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1404 15806..15987 -
1695995742.571043-CDS-E-fasciculatus_F_contig1404:15805..159871695995742.571043-CDS-E-fasciculatus_F_contig1404:15805..15987Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1404 15806..15987 -
1622927895.92659-CDS-E-fasciculatus_F_contig1404:16472..172381622927895.92659-CDS-E-fasciculatus_F_contig1404:16472..17238Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1404 16473..17238 -
1695995742.580981-CDS-E-fasciculatus_F_contig1404:16472..172381695995742.580981-CDS-E-fasciculatus_F_contig1404:16472..17238Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1404 16473..17238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1404.2962.1

>prot_E-fasciculatus_F_contig1404.2962.1 ID=prot_E-fasciculatus_F_contig1404.2962.1|Name=mRNA_E-fasciculatus_F_contig1404.2962.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=426bp
MGREQENPTKTSALTQRKTIASGRGVNSLNTSHIRFVRAKLACGPNKRSW
RSSPPYTVMTTSGGGSKQEQYGQKNACAAADLEEDLGARSRTSSGNSSSS
SSRRSWRGGARGERGTPQRRLSSTALGQQGGWAARAKGLLGGGGAGALFS
SPRTDSDDSYDSDDSDEEKAIEEAVERKLQEAIAVGAAAAEAEGSVLGSA
GASGRDGGGVVDMTAAGRGGAVDVPAGISWTALVAVVATQLAFVGLFVWV
ASAAMREQVVSACMVSPTATALGVAGMVPLLGYGLLLDTWTNWEWVRKID
EATSEVALQLFGSKRQVGKVAGIAIPLSMLVGLCEEFAFRGFLPLILAAK
TGLPTAAIVAVSATIFGGLHAATVAYFLTATLSGMFFHGLFLTTGNIFVP
IVAHAVYDAIALVRYHVKVTAPKPQ*
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mRNA from alignment at E-fasciculatus_F_contig1404:12455..17278-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1404.2962.1 ID=mRNA_E-fasciculatus_F_contig1404.2962.1|Name=mRNA_E-fasciculatus_F_contig1404.2962.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4824bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1404:12455..17278- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCTGATACCCCTACCCCGCACTACCCCGCGTCTGTGGCCATGGGTCGGG
AACAAGAAAATCCTACGAAAACGAGTGCTCTAACACAGCGAAAAACCATC
GCGTCGGGAAGGGGGGTCAATTCGTTAAACACCTCACACATTCGTTTCGT
ACGTGCCAAACTTGCTTGCGGCCCAAACAAACGCAGCTGGAGGTCTAGTC
CCCCGTACACGGTCATGACGACATCCGGGGGTGGTTCCAAGCAAGAGCAG
TACGGACAGAAGAACGCCTGCGCTGCTGCCGATCTAGAGGAAGACCTGGG
TGCCCGTAGCAGGACCAGCAGCGGCAACAGTAGCAGCAGCAGCTCGAGAC
GGAGTTGGCGAGGGGGAGCGAGAGGAGAGAGGGGAACCCCCCAGCGCCGG
CTCTCCAGCACCGCTCTTGGCCAGCAGGGAGGCTGGGCCGCTCGAGCGAA
GGGTCTCCTTGGCGGCGGCGGCGCGGGAGCCTTGTTTTCTTCGCCGCGGA
CCGACAGCGACGACAGCTACGACAGCGATGACAGCGACGAGGAAAAGGCC
ATCGAGGAAGCCGTCGAGCGAAAGCTCCAAGAGGCGATAGCCGTCGGAGC
GGCAGCGGCGGAGGCAGAAGGAAGCGTTTTGGGCAGCGCCGGTGCGAGCG
GGAGGGACGGCGGCGGCGTCGTTGACATGACCGCCGCCGGGAGGGGGGGT
GCGGTTGACGTGCCGGCGGGGATAAGCTGGACCGCGCTGGTGGCGGTGGT
GGCGACTCAGCTGGCGTTTGTCGGGCTCTTCGTCTGGGTAGCTTCGGCGG
CGATGCGTGAGTAGCGTAAGAGCAGTGCGAGTCCGTGGCGAACGAACGCT
CTGCACGTTGTCGTCCGTTGAGCAAGTTTCGCACCGGACGGTGAAACCGC
CGGCTAATTGTTTTGGCCGCCCTCTCTGCTCGTGGTCCATGATAGAAAGC
CACACCTGTGTACGTATGGCCCCGTCCGTCACCGCCGTCTCCTTCCTGAC
GTGTATTACGGTGCCAAGCTGATGTGTAGTCAGACACAGTGATACCTACG
CCGTGCCCCAAGCCGTGCCTCTCAAACCCAGACATGCGGGCGTTGCCTTC
GACGCGGCGTCGTTATTTATACCCGCGATATTGCGGACCCCCCGCACTAC
TCTCGTCGAGTTGGGGGCAAATAGTCGAGCTACTTATTGCACTGCCGCCA
ACCCCGTGCCAACCGCGCCGCATCGAGACCCCATCAAGATTCCGGAACGC
GCTACTGCGGGGCCCCTGGTGTTTGTCGCGTGTGTATGCAGGCGAGCAGG
TAGTGTCGGCCTGCATGGTGAGCCCCACCGCCACTGCTCTGGGGGTGGCA
GGCATGGTGCCGTTGCTCGGGTACGGGCTGCTGCTAGACACGTGGACGAA
TTGGGAGTGGGTGAGGAAGATCGACGAGGCAACCTCCGAGGTCGCGCTTC
AGCTGTTTGGCAGCAAGAGACAGGTGAGTTTTTTTTTTCCTGCCGTGCGT
ATTGTTTGTTGGAGCGACGGGAGAGGGGGGGAAGGGCGCAGCGTGTAGCG
GAGACAAGCCTGGAACTGACGAAAAGTCCGGATGAAAAAAAGCTTTGCCC
ATGGCTCTAGCTCAGAGTGGTTGCGACCATTTGTCTATGATTACCTTCCT
CCTATATATCCCCGGCTGGTGAGTCAAACACATACCGGGCGGTGTAGCCT
GGTGAAACCGGACGAGACCGCACCCACACACATGTCGCCAAATGAATTCT
GGTATTTTTGACAACGCGGAAATGCGAATGAGTTACCGTTTCTAGCGGTA
AAGCTCAAGGTGTGCACAGCAGGAGGGAATGCGGTGACGGGACCGGGGGA
AAAAAATTATCTTGAGAAGCTTTCTCGACTCCCAAGCTTTAGCGGGCAGG
GTGGTGAGCTACAGCTATGGTTGGGGCCACTTCCCAGGGTGCTACCGCAA
GTAGACCGTTGGTTTGCACGTGCTGCTTGCTGTGACGGCGGTATTGCTAC
TACTACTACTACTACTACTACTACTACTGATGTGATGGTGCGGAGCAGGC
GCGCACACGCCAAGACGCGCTGGCTTGCAAAGCTTAAGCCTCGTTTTCCT
TTTGACCGGCAAGACCAAGACAAGCTCTTGTTTCGTTGTTCTTGCTTCGC
GTTGTTTGCTCGGAGTCACATTCGTCATGGCGTATCACGTTCATCACCAT
GGCGACTGATAAGGTCACCCACAGAAACGACGGCTCTATTTTGTTTTTCG
CCATCGAATCGGTCAGGTGGGCAAGGTAGCCGGGATCGCGATCCCCCTGT
CGATGCTCGTCGGTCTGTGCGAGGAGTTCGCGTTCCGAGGGTTCCTGCCC
CTCATACTCGCGGCCAAGACGGGGCTACCGACGGCCGCCATCGTGGCCGT
CTCCGCGACAATCTTCGGGGTGAGCTTGTTTTTTTGTTGCTTGGACGTTA
TACAGCCGCAAGCAACCATAAGCCAACTAGCCAACCCAATAGACCGTCGC
AATTATTAACGATTCACAGGGTACTCGTGCTTGTGTTTGNNNNNNNNNNC
GACGCGAATGACCATTTTGTCAGGGGGGCGGGGAGAAGTTGCTGCCGCCG
TCTTGTTTCGGTATGTTTTGGGGGTACATGCTTCTTCTGGGCTTCCGTCT
GCCGACGATGTGTTTCAAAGGTAGTATTTTGGTGCGAATTCTACGTCTTG
GTTATAGAAGGGAGATCGTCTGTCGCATTGTTGTACGCGACCAAAGAGGT
ACGACCTTCTGTGGGAGGCACAACTTTTTTTTTCAACGTTTTTTGCGTTG
AATGGTTCATCTTTTTGTCTGACCTACCCCTTGTTTTAGACTGTTCTGCG
TACTATTTTGCACGTCTTTCTCCTGCATCACCCCCGCTTTCAAGTGCATC
TCGGCAACCTCAATCCACCCCCCTCCAGGATCTCAAGCCTCACCCCCCGT
TGCTCCCTGCCGTACCGCTTGTCGCGACGGGTTTCTGTTCTATAAATGTG
TGTGTAGGGCCTTCACGCTGCGACCGTGGCGTACTTCCTCACCGCCACCC
TCAGCGGAATGTTCTTCCATGGCCTTTTTCTTACTACGGGAAACATCTTC
GTGCCGATCGTGGCCCACGCTGTGTACGACGCGATCGCTCTCGTGCGCTA
TCACGTCAAGGTAAGCTGCTTGCTGTAGCTGTACCACTTATTTTTCTCAT
GTTTTTTTTTTGTGTCAATGATATATGCATAGTCTCCGAATAATTTCTCC
GCTTGTCGTAATACTCGGAGAGCCTCCGACGATCGAACTCACGCGCAAAG
CGCCCAAAGCTTCTCGCAGGTCGACCACGCTTTTGCTTTTTGCTTTTTGG
TGAGGGGAGCCTCCCACCTCAAGTCGAACCATCCCATTGTTATTGTACTG
GTTCTCTCCATCGTTTCCCTCGCCAACATCGTGTCTCCCGGAATCGCTCC
GCGTCAGGCCGCGCCGACCTTCACCTTCCGTGCGACAATCTCTTGTGACT
TTTGGACCGTCCTGGTTGCCTGCGTAATTTGTTTTGGTTCTTGTCGTGTG
CTGCTGCTGTTTGCCCATTATTTGCTTGTCGGTTCAGGTAACTGCGCCGA
AACCGCAGTGATGGGAAGGGCGCATCGCGAGGACAGGGGAACGCGAACGT
GGATTTTGTTCTACTTTTTGGCGTCGCACGCACCTAACAGCAGTGTCGTC
TTCCTGTTTTTGCTTAGTAGATGGCGGCCGTTGTTTTCGCTGCCTTGTAC
AGTAGTTGACAATCGCTCTGATCTCTACCCAGCACCACCTCTTCCGTACT
CTTGAAAGGAAGGGCAAGAATCTTCGTAGTCACGAGCTACAAGCAAAACG
GTATACAAGACAAGAGGCGTGCACCAGAGACCAGGAGAAAGTCAGGGTTT
CAAACGGGGGTGGGGGAGGGTATTCCTGTCTCGCCTGTCAGTGTTGCCCG
ACGACGTGTCGCGGTCGGAGACGGAGCACACTTGCTGGTGCCTCCACGCC
TTACCGAGTCAAGAGAGTGCCTTTTTTTTTTTTTTCTTAATATGACACAA
CGAATCCATCTCTATCCACAGATAGAAAAGTCTGGGATAGAGTAGCAATG
AATCCATAGCTGACGACAGTGTGTCGGACACCAGAATAGGTATGTTTCTA
CGTGTTTTGGCGTTCTTTCTACGTGGATGCACCGTAGGGGAGAGACCCGG
TGTGATGTTCAACTTCTTTACGCTGAGGGCCATGTGTCAGGGCAGAGGCG
ATTTTTTTTATGCCTGGGGAGGTTTTGGTAGTGGTGTTGGTGGTCGGCGG
CTGAAGTCCCAACCCTCACCGTGTCCTGTCACACCCCCCCCGCCACGTTT
TGGCAAAAATAATTGGGAGGAGCAGGATGTTTCTTGGCACACAACAACGG
AAGCGCCCCATCTTGTCGTTGTGCCCCCCGATACATCCAGGGGCATACCA
GTGTACACTACAGTAGGTCGGTTGGGGAGAAACCCGGCGGTGGTATCCGG
TGTCTCGTCACCACAGAACGGGCCCGGAGATGTGTGTGTTGTTTTCGATG
AGAAACTTCAATATCGAACCGAGCCTCAGTTTCTCATTTCGCCGCCACTG
TCGATCACAGCCGTCGTTCCCAGTATCTAGAGTTTAGTGTAGGATCCACC
GCTGGGGTGTGGTACGTGTTCTCTTGTTTTCCGTGAAATTTTGAGACTCT
GTTTGTTACAATATATCGGACCCGTTCTGTACAAGATCATGACCAAGAGG
TTGGAAGACTTGAAGCGTATTGCCTCACCTCTCGTTCTCGTTCGTATGCA
TAGGGCACGTGGTTTTTGGTTGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1404:12455..17278-

>mRNA_E-fasciculatus_F_contig1404.2962.1 ID=mRNA_E-fasciculatus_F_contig1404.2962.1|Name=mRNA_E-fasciculatus_F_contig1404.2962.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2556bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1404:12455..17278- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGTCGGGAACAAGAAAATCCTACGAAAACGAGTGCTCTAACACAGCG
AAAAACCATCGCGTCGGGAAGGGGGGTCAATTCGTTAAACACCTCACACA
TTCGTTTCGTACGTGCCAAACTTGCTTGCGGCCCAAACAAACGCAGCTGG
AGGTCTAGTCCCCCGTACACGGTCATGACGACATCCGGGGGTGGTTCCAA
GCAAGAGCAGTACGGACAGAAGAACGCCTGCGCTGCTGCCGATCTAGAGG
AAGACCTGGGTGCCCGTAGCAGGACCAGCAGCGGCAACAGTAGCAGCAGC
AGCTCGAGACGGAGTTGGCGAGGGGGAGCGAGAGGAGAGAGGGGAACCCC
CCAGCGCCGGCTCTCCAGCACCGCTCTTGGCCAGCAGGGAGGCTGGGCCG
CTCGAGCGAAGGGTCTCCTTGGCGGCGGCGGCGCGGGAGCCTTGTTTTCT
TCGCCGCGGACCGACAGCGACGACAGCTACGACAGCGATGACAGCGACGA
GGAAAAGGCCATCGAGGAAGCCGTCGAGCGAAAGCTCCAAGAGGCGATAG
CCGTCGGAGCGGCAGCGGCGGAGGCAGAAGGAAGCGTTTTGGGCAGCGCC
GGTGCGAGCGGGAGGGACGGCGGCGGCGTCGTTGACATGACCGCCGCCGG
GAGGGGGGGTGCGGTTGACGTGCCGGCGGGGATAAGCTGGACCGCGCTGG
TGGCGGTGGTGGCGACTCAGCTGGCGTTTGTCGGGCTCTTCGTCTGGGTA
GCTTCGGCGGCGATGCATGGGTCGGGAACAAGAAAATCCTACGAAAACGA
GTGCTCTAACACAGCGAAAAACCATCGCGTCGGGAAGGGGGGTCAATTCG
TTAAACACCTCACACATTCGTTTCGTACGTGCCAAACTTGCTTGCGGCCC
AAACAAACGCAGCTGGAGGTCTAGTCCCCCGTACACGGTCATGACGACAT
CCGGGGGTGGTTCCAAGCAAGAGCAGTACGGACAGAAGAACGCCTGCGCT
GCTGCCGATCTAGAGGAAGACCTGGGTGCCCGTAGCAGGACCAGCAGCGG
CAACAGTAGCAGCAGCAGCTCGAGACGGAGTTGGCGAGGGGGAGCGAGAG
GAGAGAGGGGAACCCCCCAGCGCCGGCTCTCCAGCACCGCTCTTGGCCAG
CAGGGAGGCTGGGCCGCTCGAGCGAAGGGTCTCCTTGGCGGCGGCGGCGC
GGGAGCCTTGTTTTCTTCGCCGCGGACCGACAGCGACGACAGCTACGACA
GCGATGACAGCGACGAGGAAAAGGCCATCGAGGAAGCCGTCGAGCGAAAG
CTCCAAGAGGCGATAGCCGTCGGAGCGGCAGCGGCGGAGGCAGAAGGAAG
CGTTTTGGGCAGCGCCGGTGCGAGCGGGAGGGACGGCGGCGGCGTCGTTG
ACATGACCGCCGCCGGGAGGGGGGGTGCGGTTGACGTGCCGGCGGGGATA
AGCTGGACCGCGCTGGTGGCGGTGGTGGCGACTCAGCTGGCGTTTGTCGG
GCTCTTCGTCTGGGTAGCTTCGGCGGCGATGCGCGAGCAGGTAGTGTCGG
CCTGCATGGTGAGCCCCACCGCCACTGCTCTGGGGGTGGCAGGCATGGTG
CCGTTGCTCGGGTACGGGCTGCTGCTAGACACGTGGACGAATTGGGAGTG
GGTGAGGAAGATCGACGAGGCAACCTCCGAGGTCGCGCTTCAGCTGTTTG
GCAGCAAGAGACAGGCGAGCAGGTAGTGTCGGCCTGCATGGTGAGCCCCA
CCGCCACTGCTCTGGGGGTGGCAGGCATGGTGCCGTTGCTCGGGTACGGG
CTGCTGCTAGACACGTGGACGAATTGGGAGTGGGTGAGGAAGATCGACGA
GGCAACCTCCGAGGTCGCGCTTCAGCTGTTTGGCAGCAAGAGACAGGTGG
GCAAGGTAGCCGGGATCGCGATCCCCCTGTCGATGCTCGTCGGTCTGTGC
GAGGAGTTCGCGTTCCGAGGGTTCCTGCCCCTCATACTCGCGGCCAAGAC
GGGGCTACCGACGGCCGCCATCGTGGCCGTCTCCGCGACAATCTTCGGGG
TGGGCAAGGTAGCCGGGATCGCGATCCCCCTGTCGATGCTCGTCGGTCTG
TGCGAGGAGTTCGCGTTCCGAGGGTTCCTGCCCCTCATACTCGCGGCCAA
GACGGGGCTACCGACGGCCGCCATCGTGGCCGTCTCCGCGACAATCTTCG
GGGGCCTTCACGCTGCGACCGTGGCGTACTTCCTCACCGCCACCCTCAGC
GGAATGTTCTTCCATGGCCTTTTTCTTACTACGGGAAACATCTTCGTGCC
GATCGTGGCCCACGCTGTGTACGACGCGATCGCTCTCGTGCGCTATCACG
TCAAGGGCCTTCACGCTGCGACCGTGGCGTACTTCCTCACCGCCACCCTC
AGCGGAATGTTCTTCCATGGCCTTTTTCTTACTACGGGAAACATCTTCGT
GCCGATCGTGGCCCACGCTGTGTACGACGCGATCGCTCTCGTGCGCTATC
ACGTCAAGGTAACTGCGCCGAAACCGCAGTGAGTAACTGCGCCGAAACCG
CAGTGA
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