mRNA_E-fasciculatus_F_contig14024.2950.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14024.2950.1
Unique NamemRNA_E-fasciculatus_F_contig14024.2950.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14024.2950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14024contigE-fasciculatus_F_contig14024:16..614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14024.2950.1prot_E-fasciculatus_F_contig14024.2950.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14024 28..525 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927894.5970557-UTR-E-fasciculatus_F_contig14024:15..271622927894.5970557-UTR-E-fasciculatus_F_contig14024:15..27Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14024 16..27 +
1695995742.0060759-UTR-E-fasciculatus_F_contig14024:15..271695995742.0060759-UTR-E-fasciculatus_F_contig14024:15..27Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14024 16..27 +
1622927894.644529-UTR-E-fasciculatus_F_contig14024:525..6141622927894.644529-UTR-E-fasciculatus_F_contig14024:525..614Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14024 526..614 +
1695995742.0237079-UTR-E-fasciculatus_F_contig14024:525..6141695995742.0237079-UTR-E-fasciculatus_F_contig14024:525..614Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14024 526..614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927894.6328442-CDS-E-fasciculatus_F_contig14024:27..5251622927894.6328442-CDS-E-fasciculatus_F_contig14024:27..525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14024 28..525 +
1695995742.0153189-CDS-E-fasciculatus_F_contig14024:27..5251695995742.0153189-CDS-E-fasciculatus_F_contig14024:27..525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14024 28..525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14024.2950.1

>prot_E-fasciculatus_F_contig14024.2950.1 ID=prot_E-fasciculatus_F_contig14024.2950.1|Name=mRNA_E-fasciculatus_F_contig14024.2950.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=166bp
MGVSPVVKEDKKTKTYTSCIIPNGGRTTASCAAIPFFPPRSFKNRSVDVA
AEADRLVLSPHETHNTNTGVRPAAGLLQSTERKDNLNCKIARPASLRKSS
HATGRVGPESPIYQQETKNRHIYMLHAKAQQSTKKTKQKAQKNKKVTGAE
LGSTHTPFLNRSLTS*
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mRNA from alignment at E-fasciculatus_F_contig14024:16..614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14024.2950.1 ID=mRNA_E-fasciculatus_F_contig14024.2950.1|Name=mRNA_E-fasciculatus_F_contig14024.2950.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=599bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14024:16..614+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCGTGATCCACATGGGTGTTTCTCCGGTCGTCAAGGAAGACAAAAAGAC
AAAAACTTATACGAGCTGCATCATCCCTAACGGTGGCCGTACAACGGCAT
CTTGCGCCGCGATTCCTTTCTTTCCGCCACGTAGTTTCAAGAACCGATCC
GTCGACGTGGCGGCAGAAGCAGACAGATTGGTTCTCTCTCCACACGAAAC
ACACAACACAAACACGGGAGTGCGGCCAGCGGCTGGACTCCTGCAAAGTA
CAGAGAGGAAAGATAACTTAAACTGTAAAATTGCTCGCCCTGCCAGTTTG
AGGAAAAGCAGTCATGCTACAGGTAGGGTCGGCCCTGAATCTCCTATATA
CCAGCAGGAAACAAAAAATAGGCATATATATATGTTGCACGCCAAAGCAC
AACAATCCACAAAAAAAACGAAACAAAAGGCGCAAAAAAACAAAAAAGTA
ACGGGGGCGGAGCTGGGAAGCACACATACCCCCTTCCTCAACCGGTCTCT
CACTTCTTGAATTGCCGGTCTTGCCTAGCTCCATGGGAAGCTTGGCCCCT
TACACCACCACCCCTGATCCAGAGGCCCCGTAGGATGGAGACACCCTAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14024:16..614+

>mRNA_E-fasciculatus_F_contig14024.2950.1 ID=mRNA_E-fasciculatus_F_contig14024.2950.1|Name=mRNA_E-fasciculatus_F_contig14024.2950.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=996bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14024:16..614+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGTGTTTCTCCGGTCGTCAAGGAAGACAAAAAGACAAAAACTTATAC
GAGCTGCATCATCCCTAACGGTGGCCGTACAACGGCATCTTGCGCCGCGA
TTCCTTTCTTTCCGCCACGTAGTTTCAAGAACCGATCCGTCGACGTGGCG
GCAGAAGCAGACAGATTGGTTCTCTCTCCACACGAAACACACAACACAAA
CACGGGAGTGCGGCCAGCGGCTGGACTCCTGCAAAGTACAGAGAGGAAAG
ATAACTTAAACTGTAAAATTGCTCGCCCTGCCAGTTTGAGGAAAAGCAGT
CATGCTACAGGTAGGGTCGGCCCTGAATCTCCTATATACCAGCAGGAAAC
AAAAAATAGGCATATATATATGTTGCACGCCAAAGCACAACAATCCACAA
AAAAAACGAAACAAAAGGCGCAAAAAAACAAAAAAGTAACGGGGGCGGAG
CTGGGAAGCACACATACCCCCTTCCTCAACCGGTCTCTCACTTCTTGAAT
GGGTGTTTCTCCGGTCGTCAAGGAAGACAAAAAGACAAAAACTTATACGA
GCTGCATCATCCCTAACGGTGGCCGTACAACGGCATCTTGCGCCGCGATT
CCTTTCTTTCCGCCACGTAGTTTCAAGAACCGATCCGTCGACGTGGCGGC
AGAAGCAGACAGATTGGTTCTCTCTCCACACGAAACACACAACACAAACA
CGGGAGTGCGGCCAGCGGCTGGACTCCTGCAAAGTACAGAGAGGAAAGAT
AACTTAAACTGTAAAATTGCTCGCCCTGCCAGTTTGAGGAAAAGCAGTCA
TGCTACAGGTAGGGTCGGCCCTGAATCTCCTATATACCAGCAGGAAACAA
AAAATAGGCATATATATATGTTGCACGCCAAAGCACAACAATCCACAAAA
AAAACGAAACAAAAGGCGCAAAAAAACAAAAAAGTAACGGGGGCGGAGCT
GGGAAGCACACATACCCCCTTCCTCAACCGGTCTCTCACTTCTTGA
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