prot_E-fasciculatus_F_contig13964.2904.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-fasciculatus_F_contig13964.2904.1
Unique Name	prot_E-fasciculatus_F_contig13964.2904.1
Type	polypeptide
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length	194

Homology

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BLAST of mRNA_E-fasciculatus_F_contig13964.2904.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 361 bits (926), Expect = 2.420e-125
Identity = 186/194 (95.88%), Postives = 191/194 (98.45%), Query Frame = 0

Query:    1 MVATQLFLGSAATLIASSAAFVAPMAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEEALDVMKTKEL 194
            MVATQLFLGSAATLIASS AFVAPMAVRSAAPAS++SALKMSAGSDYVATLPGAPF DGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGV+VAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDY+PGDLGFDPLNLKP+DE ALDVMKTKEL
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKEL 194

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BLAST of mRNA_E-fasciculatus_F_contig13964.2904.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 1.570e-115
Identity = 173/194 (89.18%), Postives = 185/194 (95.36%), Query Frame = 0

Query:    1 MVATQLFLGSAATLIASSAAFVAPMAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEEALDVMKTKEL 194
            MVA+Q+FLG+AA LIASS AFVAP+AVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPL+LSDGA P DIKKWREAEIKHGRVAMLASLG++VAE+YHPLFMG D+IGPA+ HFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDYIPGDLGFDPLNLKPD E ALDVMKTKEL
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKEL 194

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BLAST of mRNA_E-fasciculatus_F_contig13964.2904.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 311 bits (796), Expect = 1.600e-105
Identity = 158/191 (82.72%), Postives = 174/191 (91.10%), Query Frame = 0

Query:    4 TQLFLGSAATLIASSAAFVAPMAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEEALDVMKTKEL 194
            + +FLG+AATLIASS AFVAPMAVRSAAPAS+ASALKMSAGSDYVATLPGAPF DGKIFDPL LSDGA+P +IK WREAEIKHGRVAMLA++GVIVAEQYHPLFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+  L+ M+TKEL
Sbjct:    5 SNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKEL 195

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BLAST of mRNA_E-fasciculatus_F_contig13964.2904.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 4.370e-93
Identity = 142/191 (74.35%), Postives = 167/191 (87.43%), Query Frame = 0

Query:    4 TQLFLGSAATLIASSAAFVAPMAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEEALDVMKTKEL 194
            + +FLG+AATLIASSAAFV PMAVRSAAPAS+ASALKMSAG+DY+ATLPGA   +GKIFD L L+DGADP +IK WREAEIKHGRVAMLA++GV+VAEQYHP FMGPDYIGPAVDHFQEI+A++P+FW +SLLGMAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDP  +KP D+  L+ M+ KEL
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKEL 192

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BLAST of mRNA_E-fasciculatus_F_contig13964.2904.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 1.030e-86
Identity = 125/135 (92.59%), Postives = 129/135 (95.56%), Query Frame = 0

Query:   60 KIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEEALDVMKTKEL 194
            +IFDPL LSDGA P DIKKWREAEIKHGRVAMLASLGVIVAEQYHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAF+EYNTIMTAF+TPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDE ALDVMKTKEL
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKEL 170

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BLAST of mRNA_E-fasciculatus_F_contig13964.2904.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 1.810e-86
Identity = 145/194 (74.74%), Postives = 153/194 (78.87%), Query Frame = 0

Query:    1 MVATQLFLGSAATLIASSAAFVAPMAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEEALDVMKTKEL 194
            MVA+Q+F+G+AATLIASS AFVAPMAVRS     ++  LKMSAGSDYVATLPGAPFSDGKIFDPL LSDGA P DIKKWREAEIKHGRVAMLASLGVIVAE                            FW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDE ALDVMKTKEL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKEL 166

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BLAST of mRNA_E-fasciculatus_F_contig13964.2904.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 1.080e-83
Identity = 125/135 (92.59%), Postives = 129/135 (95.56%), Query Frame = 0

Query:   60 KIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEEALDVMKTKEL 194
            +IFDPL LSDGA P DIKKWREAEIKHGRVAMLASLGVIVAEQYHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDE ALDVMKTKEL
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKEL 366

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BLAST of mRNA_E-fasciculatus_F_contig13964.2904.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 5.990e-74
Identity = 119/192 (61.98%), Postives = 148/192 (77.08%), Query Frame = 0

Query:    4 TQLFLGSAATLIASSAAFVAPMAVR-SAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEEALDVMKTKEL 194
            T   +G A+   AS  AF+ P     SA P S  +A +MSAGSDYV+TLPGAPF+DGK++DP+ LS  ADP DIKKWREAEIKHGRVAMLAS+GV+VAE +HPLF+GPDYIGPA+ HF+EI+A++P+FW  +LL +A++EY  I   F     VTGEGG++ DY+PGDLGFDPL L P+DE  L+VMKTKEL
Sbjct:   56 TGALVGMASWCFASCEAFIVPTPTTLSARPTS--TAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKEL 245

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BLAST of mRNA_E-fasciculatus_F_contig13964.2904.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 1.840e-71
Identity = 104/135 (77.04%), Postives = 118/135 (87.41%), Query Frame = 0

Query:   60 KIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEEALDVMKTKEL 194
            KIFDPL L+DGA+  DIK WREAEIKHGRVAMLASLGV+VAE+YHP FMGPDYIGPAVDHFQEISA++PEFW FSLL +A IEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+ AL+ M+TKEL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKEL 149

[Close]

BLAST of mRNA_E-fasciculatus_F_contig13964.2904.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 2.770e-68
Identity = 121/199 (60.80%), Postives = 150/199 (75.38%), Query Frame = 0

Query:    1 MVATQLFLGSAATLIASSAAFVAPMAV--RSAAPASAASALKMSAGSDYVATLPGAPF---SDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEEALDVMKTKEL 194
            MV +QLFLG+AATLIASSAAFVAP+A    S A  +A+S  KM+AGSDY A+LPGAPF   ++GK FDP  L+   DP  IKKWREAE+KHGRV+MLA++G++V+E +HPLFMGP YIGPAV+H Q+I+  YP FWV SL  +AFIE  TI  A+ T S VTG G LK +Y PGDLGFDPL L P D E   +++++EL
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQEL 199

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig13964.2904.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig13964.2904.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7Q6_ECTSI	2.420e-125	95.88	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	1.570e-115	89.18	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S1_ECTSI	1.600e-105	82.72	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	4.370e-93	74.35	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S5_ECTSI	1.030e-86	92.59	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5K8D0_9PHAE	1.810e-86	74.74	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
A0A6H5JWB4_9PHAE	1.080e-83	92.59	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G5B4_ECTSI	5.990e-74	61.98	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q7_ECTSI	1.840e-71	77.04	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7FQG7_ECTSI	2.770e-68	60.80	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 51..194 e-value: 3.4E-26 score: 92.7
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 43..194 e-value: 1.4E-24 score: 88.9
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 11..194
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..5
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..35
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 36..194
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..35
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 6..17
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..20 score: 0.569
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 58..194
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 11..194

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig13964	contig	E-fasciculatus_F_contig13964:1..2535 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig13964.2904.1	mRNA_E-fasciculatus_F_contig13964.2904.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	mRNA	E-fasciculatus_F_contig13964 1..2535 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-fasciculatus_F_contig13964.2904.1 ID=prot_E-fasciculatus_F_contig13964.2904.1|Name=mRNA_E-fasciculatus_F_contig13964.2904.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=194bp
MVATQLFLGSAATLIASSAAFVAPMAVRSAAPASAASALKMSAGSDYVAT
LPGAPFSDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVIVA
EQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAF
ETPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEEALDVMKTKEL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind