mRNA_E-fasciculatus_F_contig1393.2884.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1393.2884.1
Unique NamemRNA_E-fasciculatus_F_contig1393.2884.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1393.2884.1 vs. uniprot
Match: D8LKZ2_ECTSI (Histone acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ2_ECTSI)

HSP 1 Score: 779 bits (2012), Expect = 4.080e-263
Identity = 494/615 (80.33%), Postives = 517/615 (84.07%), Query Frame = 1
Query:    1 GNGSTSPRSSSHGETTEDDMDXXXXXXXXXXNDKPGDEEVEIIATVDRSLRNRGAGGIAPGPMQEDERQHVTVQQQQMVEDVLAAASSLGRQTRNEQDGVLLPGKAPQVHELLEERHGYGMEMEMGMVQQRPKATEAEVKQHALRLLQSRLLLLTHASTCSEEIGDCRLAPLCDSVQQLLRHMRSCGNKKSCGFPHCRSSKAVLQHKHMCTDSACGLCGSVRDLSQKCFWANARHMHKRRLEESHEERRKKRQSEGKTVARPRKILAEKAKAGKECCSGLDEQGNDLGDISLGFFLRQDKAVKARKKIITAAQDSSTNTTVSAXXXXXXXG--LLPLALQQQQHGQGQLQL-----TNPSPPASTQVGNKRSHNGGTKGRASEMEPSQAFGQPAQMSSPPALAPSPRSPRLGHPRSLSVSWSSLSLTASSPPPAVPTASAGGDISTTSGRYMYKAVGEAQAIGKGVGHDHDSEDVSGGGFEASSVEAXXXXXXXXXXXXXXXXXXXXXXXXXXIPPVGSGAVVGHLRSPSEIMLDDIAESLADTSRKPSFARMQSVQAFLDDHVELRESASFGDVSAMVEQWMSLEDTDKNTMDADAD--NMDENGMDGMDAFSF 1818
            GNG +SPRSS HG+TTEDDM XXXXXXXXXX DKP D+EVE++A+ DRSL+NR  GG+   PMQEDERQ    QQQQ+V D LAAASSLG +TR   DG L P KAPQV ELL    G+G EM M MVQQ PKATEAEVKQHALRLLQSRLLLLTHASTCSE+IGDCRLAPLCDSVQQLLRHM+SCGNKKSCGFPHC+SSKAVL HKHMCTDSACGLCGSVRDLSQKCFWANARHMHKRRLEESHEERRKKRQSEGKTVARPRKILAEKAKAGKECCSGLDEQGNDLGDISLGFFLRQDKAVKARKKIITAAQD+ T      XXXX   G  LLP ALQQ  HGQGQLQ      T+PSPPA  QVG++RSH+ GTKG ASE+ PSQA GQPAQ S PPALA SPRSPRLGHPRSLSVSWSSLSLTASSP PAV TAS GG I+T +GR                  DHDSEDVSGGGFEASSVEAXXXXXXXXXXXXXXXXXXXXXXX   IPPVG GAVVGHLRSPSEIMLDDIAESLADT+RKPSFARMQSVQAFLDDHVELRESASFGDVSAMVEQWMSLEDT KNTMDADAD  NMDENGM    AFSF
Sbjct:  151 GNGWSSPRSS-HGQTTEDDMXXXXXXXXXXXXDKP-DDEVEVVASADRSLQNRDLGGLPATPMQEDERQDA--QQQQLV-DALAAASSLGDRTRKGNDGSL-PDKAPQVDELLILEDGHGHEMGMKMVQQHPKATEAEVKQHALRLLQSRLLLLTHASTCSEDIGDCRLAPLCDSVQQLLRHMQSCGNKKSCGFPHCKSSKAVLHHKHMCTDSACGLCGSVRDLSQKCFWANARHMHKRRLEESHEERRKKRQSEGKTVARPRKILAEKAKAGKECCSGLDEQGNDLGDISLGFFLRQDKAVKARKKIITAAQDNDTXXXXXXXXXXYTGGSGLLPWALQQ--HGQGQLQREADPSTSPSPPARAQVGSERSHDRGTKGHASELAPSQACGQPAQTSPPPALASSPRSPRLGHPRSLSVSWSSLSLTASSPTPAVLTASPGG-IATATGRDEV---------------DHDSEDVSGGGFEASSVEAXXXXXXXXXXXXXXXXXXXXXXXTVVIPPVGLGAVVGHLRSPSEIMLDDIAESLADTTRKPSFARMQSVQAFLDDHVELRESASFGDVSAMVEQWMSLEDTGKNTMDADADADNMDENGMG---AFSF 738          
BLAST of mRNA_E-fasciculatus_F_contig1393.2884.1 vs. uniprot
Match: A0A6H5LBV9_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBV9_9PHAE)

HSP 1 Score: 739 bits (1907), Expect = 3.220e-246
Identity = 473/634 (74.61%), Postives = 499/634 (78.71%), Query Frame = 1
Query:    1 GNGSTSPRSSSHGETTEDDMDXXXXXXXXXXNDKPGDEEVEIIATVDRSLRNRGAGGIAPGPMQEDERQHVTVQQQQMVEDVLAAASSLGRQTRNEQDGVLLPGKAPQVHELLEERHGYGMEMEMGMVQQRPKATEAEVKQHALRLLQSRLLLLTHASTCSEEIGDCRLAPLCDSVQQLLRHMRSCGNKKSCGFPHCRSSKAVLQHKHMCTDSACGLCGSVRDLSQKCFWANARHMHKRRLEESHEERRKKRQSEGKTVARPRKILAEKAKAGKECCSGLDEQGNDLGDISLGFFLRQDKAVKARKKIITAAQDSSTNTTVSAXXXXXXX---------------------GLLPLALQQQQHGQGQLQL-----TNPSPPASTQVGNKRSHNGGTKGRASEMEPSQAFGQPAQMSSPPALAPSPRSPRLGHPRSLSVSWSSLSLTASSPPPAVPTASAGGDISTTSGRYMYKAVGEAQAIGKGVGHDHDSEDVSGGGFEASSVEAXXXXXXXXXXXXXXXXXXXXXXXXXXIPPVGSGAVVGHLRSPSEIMLDDIAESLADTSRKPSFARMQSVQAFLDDHVELRESASFGDVSAMVEQWMSLEDTDKNTMDADAD--NMDENGMDGMDAFSF 1818
            G G +SPRSS HG+TTEDDMD   XXXXXXX+DKPGDE  EI+A+ DRSL+NR   G+   PMQEDERQ    QQQQ+V D LAAASSLG  TR   DG LL GKAPQV ELL    G+G EM M MVQQ PKATEAEVKQHALRLLQSRLLLLTHASTCSE +GDCRLAPLCDSVQQLLRHM+SCGNKKSC FPHC+SSKAVL HKHMCTDSACGLCGSVRDLSQKCFWANARHMHKRRLEESHEERRKKRQSEG+TVARPRKILAEKAKAGKECC GLDE+GNDLGDISLGFFLRQDKAVKARKK+ITAAQ++   TT +   XXXXX                     GLLP ALQQ  HGQGQLQ       +PSPPA  QVG+ RSH  GTKG ASE+  SQA GQPAQ   PPA A SPRSPRLGHPRSLSVSWSSLS+TAS           GGDI+T +GR                  DHDSEDVSGGGFEASSVEAXXXXXXXXXXXXXXXXXXXXXXX   IPPVG GAVVGHLRSPSEIMLDDIAESLADT+RKPSFARMQSVQAFLDDHVELRESASFGDVSAMVEQWMSLED DKN MDADAD  NM+ENGM    AFSF
Sbjct:  213 GIGWSSPRSS-HGQTTEDDMDDKEXXXXXXXDDKPGDE-AEIVASADRSLQNRDLDGLPAAPMQEDERQDA--QQQQLV-DALAAASSLGGLTRKGNDGTLL-GKAPQVDELLILEDGHGHEMGMEMVQQHPKATEAEVKQHALRLLQSRLLLLTHASTCSENVGDCRLAPLCDSVQQLLRHMQSCGNKKSCRFPHCKSSKAVLHHKHMCTDSACGLCGSVRDLSQKCFWANARHMHKRRLEESHEERRKKRQSEGRTVARPRKILAEKAKAGKECCYGLDERGNDLGDISLGFFLRQDKAVKARKKMITAAQNNDATTTANTGSXXXXXXXXXXXXXXXXXXXXXXXXGGGLLPSALQQ--HGQGQLQREADSGASPSPPARAQVGSMRSHERGTKGHASELALSQACGQPAQTPPPPAPASSPRSPRLGHPRSLSVSWSSLSMTASXXXXXXXXXXPGGDIATATGRDKV---------------DHDSEDVSGGGFEASSVEAXXXXXXXXXXXXXXXXXXXXXXXTVVIPPVGLGAVVGHLRSPSEIMLDDIAESLADTTRKPSFARMQSVQAFLDDHVELRESASFGDVSAMVEQWMSLEDADKNNMDADADADNMEENGMG---AFSF 820          
BLAST of mRNA_E-fasciculatus_F_contig1393.2884.1 vs. uniprot
Match: A0A5J4NAB4_9TREM (Histone acetyltransferase n=2 Tax=Paragonimus TaxID=34503 RepID=A0A5J4NAB4_9TREM)

HSP 1 Score: 61.6 bits (148), Expect = 1.500e-5
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 1
Query:  436 LLQSRLLLLTHASTC----SEEIGDCRLAPLCDSVQQLLRHMRSCGNKKSCGFPHCRSSKAVLQHKHMCTDSACGLCGSVR 666
            L+Q +L LL HA  C    ++ I    +   C +++Q+L H+  C   + C F HCRSSK +L+H H+C    C +C +V+
Sbjct:   26 LMQQQLALLLHAEQCRRLENKGIASNCMINHCCAMRQVLSHIEKCLCDEGCNFAHCRSSKLILRHFHLCNRKLCEVCNAVQ 106          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1393.2884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKZ2_ECTSI4.080e-26380.33Histone acetyltransferase n=1 Tax=Ectocarpus silic... [more]
A0A6H5LBV9_9PHAE3.220e-24674.61Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
A0A5J4NAB4_9TREM1.500e-535.80Histone acetyltransferase n=2 Tax=Paragonimus TaxI... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1393contigE-fasciculatus_F_contig1393:4..7455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue4.6e-10
Seed eggNOG ortholog35128.Thaps24331
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
EggNOG free text desc.TAZ zinc finger, present in p300 and CBP
EggNOG OGs2XENY@2836,COG5076@1,KOG1474@2759,KOG1778@2759
EC2.3.1.48
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, TAZ-type
Ec32 orthologEc-11_006100.1
Exons7
Model size4422
Cds size1764
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927884.5208468-UTR-E-fasciculatus_F_contig1393:3..601622927884.5208468-UTR-E-fasciculatus_F_contig1393:3..60Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1393 4..60 +
1695995737.541688-UTR-E-fasciculatus_F_contig1393:3..601695995737.541688-UTR-E-fasciculatus_F_contig1393:3..60Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1393 4..60 +
1622927884.6548228-UTR-E-fasciculatus_F_contig1393:4854..74551622927884.6548228-UTR-E-fasciculatus_F_contig1393:4854..7455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1393 4855..7455 +
1695995737.6169634-UTR-E-fasciculatus_F_contig1393:4854..74551695995737.6169634-UTR-E-fasciculatus_F_contig1393:4854..7455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1393 4855..7455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927884.534757-CDS-E-fasciculatus_F_contig1393:60..4141622927884.534757-CDS-E-fasciculatus_F_contig1393:60..414Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 61..414 +
1695995737.5538194-CDS-E-fasciculatus_F_contig1393:60..4141695995737.5538194-CDS-E-fasciculatus_F_contig1393:60..414Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 61..414 +
1622927884.5476575-CDS-E-fasciculatus_F_contig1393:1142..12971622927884.5476575-CDS-E-fasciculatus_F_contig1393:1142..1297Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 1143..1297 +
1695995737.561526-CDS-E-fasciculatus_F_contig1393:1142..12971695995737.561526-CDS-E-fasciculatus_F_contig1393:1142..1297Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 1143..1297 +
1622927884.5584877-CDS-E-fasciculatus_F_contig1393:2189..23251622927884.5584877-CDS-E-fasciculatus_F_contig1393:2189..2325Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 2190..2325 +
1695995737.5696669-CDS-E-fasciculatus_F_contig1393:2189..23251695995737.5696669-CDS-E-fasciculatus_F_contig1393:2189..2325Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 2190..2325 +
1622927884.5711539-CDS-E-fasciculatus_F_contig1393:2617..27131622927884.5711539-CDS-E-fasciculatus_F_contig1393:2617..2713Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 2618..2713 +
1695995737.5781915-CDS-E-fasciculatus_F_contig1393:2617..27131695995737.5781915-CDS-E-fasciculatus_F_contig1393:2617..2713Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 2618..2713 +
1622927884.5865993-CDS-E-fasciculatus_F_contig1393:3195..32911622927884.5865993-CDS-E-fasciculatus_F_contig1393:3195..3291Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 3196..3291 +
1695995737.5876806-CDS-E-fasciculatus_F_contig1393:3195..32911695995737.5876806-CDS-E-fasciculatus_F_contig1393:3195..3291Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 3196..3291 +
1622927884.6030536-CDS-E-fasciculatus_F_contig1393:3687..44431622927884.6030536-CDS-E-fasciculatus_F_contig1393:3687..4443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 3688..4443 +
1695995737.6007516-CDS-E-fasciculatus_F_contig1393:3687..44431695995737.6007516-CDS-E-fasciculatus_F_contig1393:3687..4443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 3688..4443 +
1622927884.6189673-CDS-E-fasciculatus_F_contig1393:4683..48541622927884.6189673-CDS-E-fasciculatus_F_contig1393:4683..4854Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 4684..4854 +
1695995737.609044-CDS-E-fasciculatus_F_contig1393:4683..48541695995737.609044-CDS-E-fasciculatus_F_contig1393:4683..4854Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 4684..4854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1393.2884.1prot_E-fasciculatus_F_contig1393.2884.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1393 61..4854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1393.2884.1

>prot_E-fasciculatus_F_contig1393.2884.1 ID=prot_E-fasciculatus_F_contig1393.2884.1|Name=mRNA_E-fasciculatus_F_contig1393.2884.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=588bp
MDDKEDESDDGDNDKPGDEEVEIIATVDRSLRNRGAGGIAPGPMQEDERQ
HVTVQQQQMVEDVLAAASSLGRQTRNEQDGVLLPGKAPQVHELLEERHGY
GMEMEMGMVQQRPKATEAEVKQHALRLLQSRLLLLTHASTCSEEIGDCRL
APLCDSVQQLLRHMRSCGNKKSCGFPHCRSSKAVLQHKHMCTDSACGLCG
SVRDLSQKCFWANARHMHKRRLEESHEERRKKRQSEGKTVARPRKILAEK
AKAGKECCSGLDEQGNDLGDISLGFFLRQDKAVKARKKIITAAQDSSTNT
TVSANTGGGSGGLLPLALQQQQHGQGQLQLTNPSPPASTQVGNKRSHNGG
TKGRASEMEPSQAFGQPAQMSSPPALAPSPRSPRLGHPRSLSVSWSSLSL
TASSPPPAVPTASAGGDISTTSGRYMYKAVGEAQAIGKGVGHDHDSEDVS
GGGFEASSVEASSGGGDGGQRGERKAAARGGGGLTVVIPPVGSGAVVGHL
RSPSEIMLDDIAESLADTSRKPSFARMQSVQAFLDDHVELRESASFGDVS
AMVEQWMSLEDTDKNTMDADADNMDENGMDGMDAFSF*
back to top

mRNA from alignment at E-fasciculatus_F_contig1393:4..7455+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1393.2884.1 ID=mRNA_E-fasciculatus_F_contig1393.2884.1|Name=mRNA_E-fasciculatus_F_contig1393.2884.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=7452bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1393:4..7455+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGAACGGCTCAACTTCCCCCCGAAGCAGCTCCCATGGCGAGACCACGGA GGACGACATGGACGACAAGGAAGATGAAAGCGATGACGGTGACAATGACA AACCAGGCGACGAGGAGGTCGAGATTATTGCCACTGTTGACCGCTCTCTG AGGAACCGGGGTGCTGGTGGTATTGCTCCCGGTCCCATGCAGGAGGATGA AAGGCAGCATGTTACCGTACAGCAGCAGCAGATGGTTGAGGATGTGTTAG CGGCCGCGTCGTCGCTTGGTCGCCAAACGCGCAACGAGCAGGACGGGGTT CTCTTGCCCGGCAAGGCCCCGCAGGTTCATGAGCTACTGGAAGAGAGGCA TGGGTACGGGATGGAGATGGAGATGGGGATGGTGCAGCAACGCCCAAAGG CGACTGAGGCGGTGAGACTGAGAACAGACAGAAGGCAGTTGGTCGATTTG GTGCTGTTTGATTCCTAAGTCGTGATATTCTTGTTCTTCCTTTGCACATG ATATATATATATATATATCTGTCTAGTTCTATGTGTTTCACCGTAGACAG TGAGGTCCAAGACTATTTCGCTCTGGAGAGCTTCGGTCTGGGGCCATACT GAAGAACTCCTCTGCGCGAGCCCCCCCGGCCCCCACCCCCTCTCCCCCCC CGCACCCGTTGCTCTCCCGTTTGCGGCGCTTGCGTTTCCTGTTATCGTGC GAGCAAACTGAGGAACAACGAGCGCGTTTCAGCAGCAGTGTTACGATGCG AGCAAACATACCCATATCCACTACCCTAAGAGAGTAGTTCATGGTATGCT AGTACTTATGGTACTGCTGTAGACGTAAACCGGTACGGGGTTGCTCGCTG AACCACCCGGTCGACCTGCATCTGGTTTATCTTATCCATCACACGGCATC GAGACGTGAATGTCAATGTTTCGGTTGGGCGCTTTGCTTGGCGTGATGGT GGAGTGCCCGTTGCCCAAAGACGAGGAGCACGGACCGTTACAGGTACAGT TACAATCCTTCGCGTTGTCTGTCGAGCCCATGGACCCAGCAGACGTAGTC GCCCGCCCCCCTGTCAACCTTGACCTTATCCACCTGCTGTTGTTTCTGTT GTCTCTCTCTCCTCTCGTTTCACCACGTTTCCGGAATAGGAGGTGAAACA GCATGCGCTGCGCCTGCTTCAGTCCCGACTGCTGCTGCTGACACACGCGT CGACGTGCTCGGAGGAGATCGGGGACTGCCGCCTGGCCCCGCTTTGCGAC TCGGTGCAACAGCTGCTGCGGCACATGCGGTCTTGCGGAAACAAGTGAGC CTTTGTCTTGTGTTTCATTTCAAGCCTCGTTTTTGTGTTTATATTTTGTT GTCCAGGTGATTTCAGTGCAGACTTGGCGCTGCCTACGGCAATGGTGTAC AACAAAAGCAGTAGTTGAGCCCGATAGGTTACACCGCATCGCATGCGTTT GCAGACGCAGGCTCACTCTTGCAACGAAAAAGGGGGACCGCTGTATTTTG AGATTTGTCTCTGTCTGGCCATCGTCATCGCCATTGCCATTCCACTTTGC ATAGTCTAGTCGTGGTCTCGTCTCAACGGCACGCGCGAGACCTTTATGCT GACAGGAGCGGCAGCAGCAGCATCAGCAGCAGCAGCAGCAGGTCGCTTGT TTTTTGTTTGATATACTAAACTATACTGTACTATATGACATAACCCCAAG CATGGCGTCACGTGACGTGACTAGGACCGCCTTTCCTTTCCAATGAATCT TGAGGGTTTCTTATGAAATCTTATGAAAAGGTTAAGGTTGCTTTCGTCGC CGACTCCCTTACAAGTAAAGTAGCTTCTCGAGATGTGCAAAAGTTCTCTC CATATGTCCCGCCATCCCATGTAATCGCATCGAGAAAGAGGCTGCTACCT CACCTTACCGCACCGCGGCGGTTCTCGTCCCACTTTGCTTTTCCTTTACC ACGGTGTGACGTCACGTCATGATGATGATGCAATGATGGCACCCTGGTTA TGACGTTTCCTGGGATACATATCACAGCGCGTTGTGGTATGATTTACTGC TTTGCGTACGAGTGCCGCCATCCCTTTGTCATGGCGCGTTGCGTATGAAT TGGCTGGAAAACCGCGCTAGTCCCCACTGCTGTCGTGTACTTATTAAACT CACACGACGTGACGCATGGTCTTTGCGAAATGGCAGGAAATCTTGCGGGT TCCCCCACTGCAGGTCCTCGAAGGCCGTTCTCCAGCACAAGCACATGTGC ACGGACTCGGCCTGCGGGCTGTGCGGCAGCGTGAGAGACCTGTCGCAGAA GTGCTTCTGGGCAAACGCAAGGGTGAGCGATCGATCCATGATAAGAATAG AAGACATGATCAGCAAGAGTGGTCGTGCCTTTCAAGCTGTGTTGTTGTGT CGGCCACTGACTGGCGACCTTAGCCTTGCGGTCTTTCGTGGGGACTACGT GGCACAGCAGGTGTATCGTGGTGTGGTGTGGTGGGCCCGTATATAAAAAA ATACACTGGAGAGAGAGGCCATACAGGGCAAGCAGGCCAGAATAACACCA ACGCATTTCTACTGTTGTCCGTGCTGACCGTGCTGTGTTGTGTGACGTGT GATGTGCGATGCAGCACATGCACAAGCGTCGTCTGGAGGAGAGCCACGAG GAACGCCGCAAGAAGCGTCAGAGTGAGGGCAAGACAGTCGCCCGGCCCCG CAAGATATTGGTGAGGCGAAACTCACTTTTACAAGTGTCGATGATGATTA TTTTTGTTCCGAAGCGAATTCTCTTGCTATGGCTGTTGAAAATGATGATT TTTCTGTGAGCCGAATTCACTTGTTATTTACTTTTTTTTTTTTGTCGCCA CCGCGGAGTGGTTGTTCGTCTCGTCTTTGGCCTGTCTTGACGTGTTGTTT TGTGTTATTCTTTCTCTCTGTGTATTGTTATTTTTTTACGGTCGATTGCA ACAAGTCCGTATTCCACGTTTGCCATATTTCTAGTTTTGCACCCTCTCGA GGCCAGACAGCAGTCAGTTAGTCAGCAAAGATAACCCACGACGATCGTTG CTGCCTTTTCCGTTGGTGACGCTGCTTTTCTTATTTGTCACAACACCTCT CTTGTATTTCTGTTTTGTGTGTGCTCCTGCTGCTCTTGTTTGTGCTTGTC GCTTCTGTTGTACACACCCTTATTCTGTCGGTGTGGGAGTAGGCAGAGAA AGCCAAGGCAGGGAAAGAGTGCTGCTCTGGGCTCGACGAGCAAGGAAACG ACCTGGGCGACATTTCGCTGGGATTTTTCCTCAGACAAGTGAGCGAGGGG AAGAAAAGTGTTTTTACGGTTAAGGTTAAGCCCAAACAAACGCTAACGCG AGCGGTTATCTCCGCGACCATCAAGCCACTCCCGTTGTGTGCTCTCAGTG CTCTCAGCTCGAGGGTTGAGGGGCGCAGTTTCTCTTGCTTTTGGTAGGGC TTTGTCATTTAGCGGAGCCGGAATACGCGTAAGAGCTATTAAAAAAATAG GTGATGCCGCCGGTGATCCACTTTGTGATGCCGTTGCACTCCTGTGCCCC TTCCGCTCCTCCATCCTCCCTCCTCCCTCTTGCATGCTCACCTCTCCCTC CACCCCCTCCGCGCTTCCCGCATCTTTTCTCTGCGGTTCGCTCCTGTCCC GGTGCGGTACGGTGTGGTGGTATGGTGCATTCAGGACAAGGCCGTCAAAG CACGAAAGAAGATTATCACAGCGGCCCAGGACAGCAGTACCAACACCACC GTCTCCGCAAACACCGGCGGCGGCAGCGGCGGCTTGCTCCCTTTGGCTCT GCAACAGCAACAGCACGGCCAGGGACAGCTGCAGCTCACAAACCCTTCCC CCCCGGCCAGCACCCAAGTCGGAAACAAGCGCAGCCACAACGGTGGCACG AAGGGTCGAGCCTCGGAGATGGAGCCGTCACAGGCTTTCGGCCAGCCGGC TCAGATGTCCTCACCGCCGGCTCTAGCACCGTCGCCGCGATCGCCTCGCC TGGGACACCCGCGCTCCCTGTCGGTGTCGTGGTCGTCGCTGTCTTTAACG GCGTCTTCTCCGCCACCGGCCGTGCCTACGGCGTCCGCAGGAGGAGACAT TTCCACGACTAGCGGTCGATACATGTACAAGGCCGTGGGCGAAGCTCAAG CCATCGGCAAGGGGGTGGGTCATGATCATGACTCGGAGGACGTTTCCGGC GGGGGTTTCGAAGCGAGCTCCGTGGAGGCTTCCTCGGGGGGAGGGGACGG GGGACAGCGGGGCGAGAGGAAGGCGGCGGCGCGCGGTGGCGGAGGGCTGA CGGTGGTGATCCCTCCCGTCGGGTCGGGGGCTGTTGTGGGACACCTGCGG AGCCCCAGCGAGATCATGCTGGACGATATCGCGGAGTCCCTGGCGGATAC CAGTCGAAAGCCTTCCTTCGCCAGGATGCAGAGCGTTCAGGTGAGCGTTG ATTGTGTGGCTGTTGTTTTGGAGCTATGTTATGTACAGTAACGCGTGTGT CCAGACCTGGAAGGTCGCGTTTCGTATGTGTTCATCGTGAGGGGTGTGCA AGGTGCAAGGTCTAAAGTTCAAGTGTAAACACGGGGTCGTAGCGTCCTAT CACGAGTGGGAAGGAAAAGCACAACCGAGTATGAGTTGCCTCCCCCCCTC CTTCCCCCTCTCACTTGGGCGGTTTTATAGGCGTTCCTCGATGACCATGT CGAGCTTAGGGAGAGCGCCAGCTTCGGAGACGTTAGCGCGATGGTGGAGC AGTGGATGTCCCTGGAAGACACGGACAAGAACACCATGGATGCCGATGCC GACAACATGGACGAGAATGGCATGGATGGCATGGATGCCTTCAGCTTCTG ACTCACCGCCGTTACAAGGGTAGCCAGTAGCCAGCAGTGGGGGGGGAGGG GACGGCTCCGTAGTTTCATGCTGAGGGTGGTGCTTGTCTCGGTAATTGCA TCGAACACTGTACGCTACAAATGACCACGATGTGTGATGATGTGTGTGAA AGGTAAAGACGCCGGTCTGCGCAACACAGGTACAACAGTAGTCCGCGCGG GTCTTCCACGCCCCGATGGTATACTATTCAGTAGGTAAGGGGGTACGAGG GGAAACGAAACTTTTTGCGGGTTGGGGCCATGCTCTCCCGTACCCTCAGA AGACCGCAGGATTTTCTAGCTCTCCCCCCCGCCTGGTCCTCGCGCAACGA TTGATGGAAAGCAATCGTAGGGACGATTGATGGAAAGCAATCGTAGGGTT TCTTGTTCCTGTGGTGCACACAGGGCAGGTGCTAGTCTTAAGGCTGCTCT CCAGCAAAGACCGACCGTGGGTGAAAGACTATCTAGTCTATCTATCTAGC ATGAGTAGAGGCGTGATGTCAAGGCGGCAATGCTATTGTTGTCGCCAAGC AGGTGTCGGTGTGACAACGGCGCCTTTTGCTGTGGTGAGTTGATTGGTGA GGTGAGGTGTCATTCTTGGCTTGTCTCAACACTGCTGTATGCTGTACAAA TTCTTTCATGGATCATGTGTCATAGACGTGACGTGAAACGTGTGTGTTGT CTTGTTGTCTTGTTCTGCGTTTGTTTCGTTTGTTTTGGGTTGGTTTGCAT ATGCTTCAGCGAGGGGTGACCGCCTCCGTACACCCGAGCCTGATCCACGT ATCAGACCACACACGGAGTGGAGGAGTGGTAGCGATCACGTCATGCCGTG GAGCAGACTTGTCGAGGTCGTCGTGTTGTGTCTAGACATGGGGGAGAAGG AAATTGCTGTGCGATTTGGCGGGAAAAGGGAGGGGGCGGTGGAGCCACGG CAACTTCTTTTTCGTTCATGGGTGCAGCTCACGAATAGCGACCAGCACGA TGGCGATGTCACCGTGACGTCATGTATGCATGCATGCTGACGCATTGTCG TGTCGTGTCGTGTCGTAACTTTGCCAAGTACGGTAGGTGTCAAGCAGCTC AGCTGGTATGTTTTTGCGTGGTTGGCACTCGGTCTTTGTTCGTTTGATAA GTGTGACAAATGAAGCGTTACTGTGTGGGTCCTTGCGAGAGATTTCAAAA CGAAGAGCGTTACTGCTGTGTGGGTAGATGAGAGGATGCACACAGCATGG TGTGGGTAATAGACGGGGTGGGGCGGGTGGATATAGAGTAGAGTACAGGA GGTTCTATAGATAGACTAGAGGAGTTGGGTTGATAAGCGGGTTTGGTTGA TTTGAATCGCTGAAAGTCTGCGGGGTCTGCGGGGTGAAGTTCATTTTCGT TCTCATCATCATACGCGCGGGGTAAAGCAGTATGTAGGACTTAGATGTGA CTGCTGAAATTTTTATGTGACGATGCGTGTCTACAATACTGAATACTGCC TTCGGACAATCATTATCATTCTTGGTGTGGTTTTGCTCACTGTCACTCGT TGTGTTTGGTATCACTGGCTTGGGTGTCGTGCGCATGTTGTTGTTGTTTG GCGTGAATAGAAAAAGAAAACCCTTGGGTATGGTGCTGCTGCGCGTTGCG CTTCGAAACAGGGCAGAAATTGGCCATGCCCACAGGAAAAAACAGGGGAT GGGTCGGGACGGTCGCAGCACTGAATGAATGATGCTATCAATGCACCCGG GCTGGGAAATGGGAGGCGACAACGGGGTGGTACTGTCACACTGTTGCTTT GGGGGGGGCTGGATAAGTAGACAAAGGAGGCGATCTTGGGAGTTGGACTT TGACATGGCACGACGTTTGTCTTGCCACAGGTAGCAGTTTGAAACCAGCT TGGTTGACGAGGTTTTTATGCTGTCGTTGGAAGAACTGGAAGCCTCTCTT CACTGCTATGTATCCGTGTCCGATGCCATGTTAGTTGTCGCTCGATCGGG CGTCGTCGTGTTACGTCGAGTCGACCCTTCCCGCTATGTCCTTTGATTCT CATGGCAACGCCGAACTCACGATAGTTCGGCTTATTGGCGTTCGCAGCTA CCATATGGCGCACACATATAATAGAACAGAGGCACGCGTCGGATTGTCTT TTTAAGATATAGATAGACTAGACCCTAGGAACTGAATGATGAATAGGATG CGCATGTTCGCGCTTTGTTTTCAACAAACGTGCGGTGGCGGAGTCAGGGC GAAGGAGAGCACGGCTCCGAGGTTAAGAGCGGGGAAAGATGCCCAATGTC GTGTTTGAGTTCGACTAAGCATGCACGTGGACGTAGGTCACAGAATATTA AGTATTAAGAAACATTAGTGTACTTAGTGTACTGCCTTATTTGGTAGAAA ACATTTACTTACTTTTTTTGTTCGGGGGGTGGGGGGGGATTGGTGGCGGC GCATTTCATTTGGTGGATAATTGGGTAATGATATTAATAGTTGGGTTCAT GATTTTCATCTGTGGTTTGACCGAGAGCGTTGCTGAAAGCCACGCAAGAC AGAACGACTGTTCTTGGTTTGTTTGCAGGCGGAAGAAGATGAAATTATCG AC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1393:4..7455+

>mRNA_E-fasciculatus_F_contig1393.2884.1 ID=mRNA_E-fasciculatus_F_contig1393.2884.1|Name=mRNA_E-fasciculatus_F_contig1393.2884.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3528bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1393:4..7455+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACGACAAGGAAGATGAAAGCGATGACGGTGACAATGACAAACCAGG
CGACGAGGAGGTCGAGATTATTGCCACTGTTGACCGCTCTCTGAGGAACC
GGGGTGCTGGTGGTATTGCTCCCGGTCCCATGCAGGAGGATGAAAGGCAG
CATGTTACCGTACAGCAGCAGCAGATGGTTGAGGATGTGTTAGCGGCCGC
GTCGTCGCTTGGTCGCCAAACGCGCAACGAGCAGGACGGGGTTCTCTTGC
CCGGCAAGGCCCCGCAGGTTCATGAGCTACTGGAAGAGAGGCATGGGTAC
GGGATGGAGATGGAGATGGGGATGGTGCAGCAACGCCCAAAGGCGACTGA
GGCGATGGACGACAAGGAAGATGAAAGCGATGACGGTGACAATGACAAAC
CAGGCGACGAGGAGGTCGAGATTATTGCCACTGTTGACCGCTCTCTGAGG
AACCGGGGTGCTGGTGGTATTGCTCCCGGTCCCATGCAGGAGGATGAAAG
GCAGCATGTTACCGTACAGCAGCAGCAGATGGTTGAGGATGTGTTAGCGG
CCGCGTCGTCGCTTGGTCGCCAAACGCGCAACGAGCAGGACGGGGTTCTC
TTGCCCGGCAAGGCCCCGCAGGTTCATGAGCTACTGGAAGAGAGGCATGG
GTACGGGATGGAGATGGAGATGGGGATGGTGCAGCAACGCCCAAAGGCGA
CTGAGGCGGAGGTGAAACAGCATGCGCTGCGCCTGCTTCAGTCCCGACTG
CTGCTGCTGACACACGCGTCGACGTGCTCGGAGGAGATCGGGGACTGCCG
CCTGGCCCCGCTTTGCGACTCGGTGCAACAGCTGCTGCGGCACATGCGGT
CTTGCGGAAACAAGAGGTGAAACAGCATGCGCTGCGCCTGCTTCAGTCCC
GACTGCTGCTGCTGACACACGCGTCGACGTGCTCGGAGGAGATCGGGGAC
TGCCGCCTGGCCCCGCTTTGCGACTCGGTGCAACAGCTGCTGCGGCACAT
GCGGTCTTGCGGAAACAAGAAATCTTGCGGGTTCCCCCACTGCAGGTCCT
CGAAGGCCGTTCTCCAGCACAAGCACATGTGCACGGACTCGGCCTGCGGG
CTGTGCGGCAGCGTGAGAGACCTGTCGCAGAAGTGCTTCTGGGCAAACGC
AAGGGAAATCTTGCGGGTTCCCCCACTGCAGGTCCTCGAAGGCCGTTCTC
CAGCACAAGCACATGTGCACGGACTCGGCCTGCGGGCTGTGCGGCAGCGT
GAGAGACCTGTCGCAGAAGTGCTTCTGGGCAAACGCAAGGCACATGCACA
AGCGTCGTCTGGAGGAGAGCCACGAGGAACGCCGCAAGAAGCGTCAGAGT
GAGGGCAAGACAGTCGCCCGGCCCCGCAAGATATTGCACATGCACAAGCG
TCGTCTGGAGGAGAGCCACGAGGAACGCCGCAAGAAGCGTCAGAGTGAGG
GCAAGACAGTCGCCCGGCCCCGCAAGATATTGGCAGAGAAAGCCAAGGCA
GGGAAAGAGTGCTGCTCTGGGCTCGACGAGCAAGGAAACGACCTGGGCGA
CATTTCGCTGGGATTTTTCCTCAGACAAGCAGAGAAAGCCAAGGCAGGGA
AAGAGTGCTGCTCTGGGCTCGACGAGCAAGGAAACGACCTGGGCGACATT
TCGCTGGGATTTTTCCTCAGACAAGACAAGGCCGTCAAAGCACGAAAGAA
GATTATCACAGCGGCCCAGGACAGCAGTACCAACACCACCGTCTCCGCAA
ACACCGGCGGCGGCAGCGGCGGCTTGCTCCCTTTGGCTCTGCAACAGCAA
CAGCACGGCCAGGGACAGCTGCAGCTCACAAACCCTTCCCCCCCGGCCAG
CACCCAAGTCGGAAACAAGCGCAGCCACAACGGTGGCACGAAGGGTCGAG
CCTCGGAGATGGAGCCGTCACAGGCTTTCGGCCAGCCGGCTCAGATGTCC
TCACCGCCGGCTCTAGCACCGTCGCCGCGATCGCCTCGCCTGGGACACCC
GCGCTCCCTGTCGGTGTCGTGGTCGTCGCTGTCTTTAACGGCGTCTTCTC
CGCCACCGGCCGTGCCTACGGCGTCCGCAGGAGGAGACATTTCCACGACT
AGCGGTCGATACATGTACAAGGCCGTGGGCGAAGCTCAAGCCATCGGCAA
GGGGGTGGGTCATGATCATGACTCGGAGGACGTTTCCGGCGGGGGTTTCG
AAGCGAGCTCCGTGGAGGCTTCCTCGGGGGGAGGGGACGGGGGACAGCGG
GGCGAGAGGAAGGCGGCGGCGCGCGGTGGCGGAGGGCTGACGGTGGTGAT
CCCTCCCGTCGGGTCGGGGGCTGTTGTGGGACACCTGCGGAGCCCCAGCG
AGATCATGCTGGACGATATCGCGGAGTCCCTGGCGGATACCAGTCGAAAG
CCTTCCTTCGCCAGGATGCAGAGCGTTCAGGACAAGGCCGTCAAAGCACG
AAAGAAGATTATCACAGCGGCCCAGGACAGCAGTACCAACACCACCGTCT
CCGCAAACACCGGCGGCGGCAGCGGCGGCTTGCTCCCTTTGGCTCTGCAA
CAGCAACAGCACGGCCAGGGACAGCTGCAGCTCACAAACCCTTCCCCCCC
GGCCAGCACCCAAGTCGGAAACAAGCGCAGCCACAACGGTGGCACGAAGG
GTCGAGCCTCGGAGATGGAGCCGTCACAGGCTTTCGGCCAGCCGGCTCAG
ATGTCCTCACCGCCGGCTCTAGCACCGTCGCCGCGATCGCCTCGCCTGGG
ACACCCGCGCTCCCTGTCGGTGTCGTGGTCGTCGCTGTCTTTAACGGCGT
CTTCTCCGCCACCGGCCGTGCCTACGGCGTCCGCAGGAGGAGACATTTCC
ACGACTAGCGGTCGATACATGTACAAGGCCGTGGGCGAAGCTCAAGCCAT
CGGCAAGGGGGTGGGTCATGATCATGACTCGGAGGACGTTTCCGGCGGGG
GTTTCGAAGCGAGCTCCGTGGAGGCTTCCTCGGGGGGAGGGGACGGGGGA
CAGCGGGGCGAGAGGAAGGCGGCGGCGCGCGGTGGCGGAGGGCTGACGGT
GGTGATCCCTCCCGTCGGGTCGGGGGCTGTTGTGGGACACCTGCGGAGCC
CCAGCGAGATCATGCTGGACGATATCGCGGAGTCCCTGGCGGATACCAGT
CGAAAGCCTTCCTTCGCCAGGATGCAGAGCGTTCAGGCGTTCCTCGATGA
CCATGTCGAGCTTAGGGAGAGCGCCAGCTTCGGAGACGTTAGCGCGATGG
TGGAGCAGTGGATGTCCCTGGAAGACACGGACAAGAACACCATGGATGCC
GATGCCGACAACATGGACGAGAATGGCATGGATGGCATGGATGCCTTCAG
CTTCTGAGCGTTCCTCGATGACCATGTCGAGCTTAGGGAGAGCGCCAGCT
TCGGAGACGTTAGCGCGATGGTGGAGCAGTGGATGTCCCTGGAAGACACG
GACAAGAACACCATGGATGCCGATGCCGACAACATGGACGAGAATGGCAT
GGATGGCATGGATGCCTTCAGCTTCTGA
back to top