mRNA_E-fasciculatus_F_contig1393.2885.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1393.2885.1
Unique NamemRNA_E-fasciculatus_F_contig1393.2885.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1393.2885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1393contigE-fasciculatus_F_contig1393:8088..10331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size401
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1393.2885.1prot_E-fasciculatus_F_contig1393.2885.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1393 8088..10331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927884.4263017-CDS-E-fasciculatus_F_contig1393:8087..83271622927884.4263017-CDS-E-fasciculatus_F_contig1393:8087..8327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 8088..8327 +
1695995737.5122979-CDS-E-fasciculatus_F_contig1393:8087..83271695995737.5122979-CDS-E-fasciculatus_F_contig1393:8087..8327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 8088..8327 +
1622927884.4412017-CDS-E-fasciculatus_F_contig1393:9688..98201622927884.4412017-CDS-E-fasciculatus_F_contig1393:9688..9820Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 9689..9820 +
1695995737.5221071-CDS-E-fasciculatus_F_contig1393:9688..98201695995737.5221071-CDS-E-fasciculatus_F_contig1393:9688..9820Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 9689..9820 +
1622927884.4614542-CDS-E-fasciculatus_F_contig1393:10304..103311622927884.4614542-CDS-E-fasciculatus_F_contig1393:10304..10331Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 10305..10331 +
1695995737.5306988-CDS-E-fasciculatus_F_contig1393:10304..103311695995737.5306988-CDS-E-fasciculatus_F_contig1393:10304..10331Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1393 10305..10331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1393.2885.1

>prot_E-fasciculatus_F_contig1393.2885.1 ID=prot_E-fasciculatus_F_contig1393.2885.1|Name=mRNA_E-fasciculatus_F_contig1393.2885.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=133bp
PVLLWLGRIGRNRFIPADLCVRYGEVKGALMEKGAVWDLKATHTNLRSPF
FYNVNIINVQQQHGRAAAAPAAAADSTATNRHHASLHMAASTSPPNPSPL
RRAGAALPAAGKPSHQRNQARRSQVRRARQTSG
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mRNA from alignment at E-fasciculatus_F_contig1393:8088..10331+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1393.2885.1 ID=mRNA_E-fasciculatus_F_contig1393.2885.1|Name=mRNA_E-fasciculatus_F_contig1393.2885.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2244bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1393:8088..10331+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTGTTCTTCTCTGGCTCGGACGGATAGGAAGAAACAGGTTTATCCCAGC
TGATCTTTGCGTTCGGTATGGGGAGGTGAAGGGGGCATTGATGGAGAAGG
GGGCGGTGTGGGATCTGAAGGCTACACACACGAACCTCCGCTCTCCGTTC
TTCTACAACGTAAATATCATCAACGTCCAACAACAACATGGCAGAGCCGC
CGCCGCCCCAGCTGCAGCAGCAGACTCCACCGCCACAAACGTGAGAAGTG
GTTGTGTATTGTTCACCGTATGTGTGAAATTTGTTTGGTGTGCGGTTGAT
TCAGGTGCAATCGCACGGCGGGTTGATCCACCTTCACACAGCTCCTGTGG
ATACAAGTCTATAGTCTACAGTTAGTCTTCTGAACAGCAGCAGACCGACC
CGGATCTTGAGCACCTCTTCCTTACTCAGTGAATACGAAGTAGCCGCCGC
GGCGGCGTGGTATGCGTATGCATAGTAGGTAACTACATAGTCTCTGCTGT
GCAGAACTAAGGGTCTACTGCTGTTGTAGACTACGCTCGAAGCCTGGAAG
TCTTGTCGAATAAGACTCCGAGTACAAAGTGAGAGCGGCACGGCGGCATG
GGCACGTGTCCATTGCTTTAGACTGGTGTCATATGCGGACACACCAGCAA
CGAGTGCGATGATACGTAATACAAGTAGATGGTATCAGATATCGGTTCAG
CCCTCGGACACACCCGTCCGGTGGAGACGAAGACTCGAAGCTCCACCAGA
CTGCATGCTGTACCTGGTACAGGTAGTCTGTTGTCGGTAATGCCCCTCAC
GCACACTACACACGTCATGTTGGCACTATTAGCACCCGTGTGTCACCCCA
CCCCGTCATACGCCGGTGGTATGTAGACAACTAATAGACTTTAGACCACC
TGTTCTATGCAGGGTCATTCTGACTGTTATTGTAGCGTTCCTCCCGGTCT
GTTTGTGCCTGTAACTTACCAGGTACCGCACAGGACAACACAGCAACCCC
CGCCCCACACACACAAACGATAGTCTAGATATAGATACTGCTTTCGCGGG
CCAACATGAGGTTACGCTTACCCTTATCGATATGAGCCCAAATAACACTA
TTTTAGCACTCTCTCGATTGAAGGACCGCGGTGATATACGATATCACCTC
TCACACCAACCGTTGTCATTTTGTTTAGAACCCCAATATGTTGTCACCGT
ATTTTCTTTGTCGTGTTTACTGTAACACATGGCGAGCAATCAAGATTCCG
TGTTTCGCCCTATTTCGGAGAGGGGCCGAAGACCCCCCCCCCCCGGTGCC
CCGGCCGTGATTCAAACATCATGAAACATGCCTTTGTTATTTCCCTCTCC
TTCTACATAGTAAGTGTGACTTTTTGCACAACTTCCACGGAGCGTCGTCC
TTCCTCCACAGGCAGTTCCTGAACATCCACTCATCCCTCCTTCTCCCAGC
TTCAGATGCTGATGATAAGAGCAAGATAGATATTGATCAGCTTCAACATT
TGGCTGAGGCTACTCCATATTTTGTTTTTCCAACACGGAAATCACATTTC
CTCCTGTGGTGTTCAATCGTTTCGGCGGCGTGTGCGTATGTCGGTCTTCA
GCGGCACCACGCTTCCCTTCATATGGCCGCCTCCACATCACCTCCAAACC
CCTCCCCCCTTCGAAGAGCCGGTGCTGCCCTTCCCGCCGCCGGAAAGCCT
TCTCACCAGAGAAATCAAGCTCGACGCTCTCAGGTGACCGTCGACACACA
CACACGTGGTGCGGTAGGTACGACTGGCAGTGTTTGACGACGTGCGTTTC
GGCCAGGCGTTAGTGTTTCCACGGAGCGCAGCGGCATTGACCCCTGGGTT
GCGGTTGATTTTATCACCGAAGGAATGTTAATGTTCAATTACATGTGAAA
CCCATAGATAGGTAGATATACCGACAATAAGGAAGGGTGTTTTCTATCAT
GCCGACGAGATCGTTGATATAATCGTTCCTGCCACAGACTATTCCTGCAA
CGTTTAGCCCGGTGGTGCTCTTGGGGCTCCATGAAGCAGACGCCCTTCTT
GTTCCCTAGCAATGGCCGAGTCAGTGTTTGCTGTTTGGTGTGACAAATAG
GGTCTGTCTTAGTCCCTTTCAATGAACGAGTCATCGTGCTTGCTGTCTGT
TTGGTGCGACAAATAGGGCCGGCGTCTCAACGACCTGGCCGACTGCCTGA
CGCTATCAACCAAGCAGGTGCGAAGAGCCAGACAAACATCAGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1393:8088..10331+

>mRNA_E-fasciculatus_F_contig1393.2885.1 ID=mRNA_E-fasciculatus_F_contig1393.2885.1|Name=mRNA_E-fasciculatus_F_contig1393.2885.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=798bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1393:8088..10331+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTGTTCTTCTCTGGCTCGGACGGATAGGAAGAAACAGGTTTATCCCAGC
TGATCTTTGCGTTCGGTATGGGGAGGTGAAGGGGGCATTGATGGAGAAGG
GGGCGGTGTGGGATCTGAAGGCTACACACACGAACCTCCGCTCTCCGTTC
TTCTACAACGTAAATATCATCAACGTCCAACAACAACATGGCAGAGCCGC
CGCCGCCCCAGCTGCAGCAGCAGACTCCACCGCCACAAACCCTGTTCTTC
TCTGGCTCGGACGGATAGGAAGAAACAGGTTTATCCCAGCTGATCTTTGC
GTTCGGTATGGGGAGGTGAAGGGGGCATTGATGGAGAAGGGGGCGGTGTG
GGATCTGAAGGCTACACACACGAACCTCCGCTCTCCGTTCTTCTACAACG
TAAATATCATCAACGTCCAACAACAACATGGCAGAGCCGCCGCCGCCCCA
GCTGCAGCAGCAGACTCCACCGCCACAAACCGGCACCACGCTTCCCTTCA
TATGGCCGCCTCCACATCACCTCCAAACCCCTCCCCCCTTCGAAGAGCCG
GTGCTGCCCTTCCCGCCGCCGGAAAGCCTTCTCACCAGAGAAATCAAGCT
CGACGCTCTCAGCGGCACCACGCTTCCCTTCATATGGCCGCCTCCACATC
ACCTCCAAACCCCTCCCCCCTTCGAAGAGCCGGTGCTGCCCTTCCCGCCG
CCGGAAAGCCTTCTCACCAGAGAAATCAAGCTCGACGCTCTCAGGTGCGA
AGAGCCAGACAAACATCAGGGGTGCGAAGAGCCAGACAAACATCAGGG
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