mRNA_E-fasciculatus_F_contig13812.2812.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13812.2812.1
Unique NamemRNA_E-fasciculatus_F_contig13812.2812.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13812.2812.1 vs. uniprot
Match: D7FLB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB4_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 2.180e-97
Identity = 145/165 (87.88%), Postives = 155/165 (93.94%), Query Frame = 1 
Query:   43 AHRTGGWDSLEPEDIWGGGPVLFVDKVALPMVEVAIGLMKVMIDDEELDNMSMAIKRVRRWAVLEKGGSSNNVFQKEFFRRMFLWAHGDGQNLEGCFEITMETIGSADYEALACPYLKPGAREGPDDDSCDEVPETLAPANSMLSDGDNGSDVGSDGVAMEEVST 537
            AHRTGGWDSLEP+D+WGGG VLFVDKVALPMVEVAIGLMKV+IDDEELDNM+MAIKRVRRWAVLEKGGSSN VFQKEFFRR+FLWAHG  QNLEGC +ITMETIG  DYEALACPYLKPGAR+GPD DSCDEVPETLAPANSMLSDGD+GSD  ++GVAMEEVST
Sbjct:  334 AHRTGGWDSLEPDDVWGGGTVLFVDKVALPMVEVAIGLMKVIIDDEELDNMAMAIKRVRRWAVLEKGGSSNTVFQKEFFRRVFLWAHGASQNLEGCLDITMETIGCTDYEALACPYLKPGARKGPDVDSCDEVPETLAPANSMLSDGDDGSDSDAEGVAMEEVST 498
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BLAST of mRNA_E-fasciculatus_F_contig13812.2812.1 vs. uniprot
Match: D7FI40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI40_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 1.400e-72
Identity = 110/127 (86.61%), Postives = 118/127 (92.91%), Query Frame = 1 
Query:  157 MKVMIDDEELDNMSMAIKRVRRWAVLEKGGSSNNVFQKEFFRRMFLWAHGDGQNLEGCFEITMETIGSADYEALACPYLKPGAREGPDDDSCDEVPETLAPANSMLSDGDNGSDVGSDGVAMEEVST 537
            MKV+IDDEELDNM+MAIKRVRRWAVLEKGGSSN VFQKEFFRR+FLWAHG GQNLEGC +ITMETIG  DYEALACPYLKPGAR+GPD DSCDEVPETLAPANSMLS GD+GSD  ++GVAMEEVST
Sbjct:    1 MKVIIDDEELDNMAMAIKRVRRWAVLEKGGSSNTVFQKEFFRRVFLWAHGGGQNLEGCLDITMETIGCTDYEALACPYLKPGARKGPDVDSCDEVPETLAPANSMLSGGDDGSDGDAEGVAMEEVST 127
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BLAST of mRNA_E-fasciculatus_F_contig13812.2812.1 vs. uniprot
Match: D8LNI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI2_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 2.610e-11
Identity = 28/33 (84.85%), Postives = 32/33 (96.97%), Query Frame = 1 
Query:    1 MRILVGSILELPLQAHRTGGWDSLEPEDIWGGG 99
            MRILVG+IL+LPLQAHRTGGWDS EP+D+WGGG
Sbjct:  163 MRILVGAILDLPLQAHRTGGWDSFEPDDVWGGG 195
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BLAST of mRNA_E-fasciculatus_F_contig13812.2812.1 vs. uniprot
Match: D7G5N5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N5_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.720e-7
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  118 KVALPMVEVAIGLMKVMIDD-EELDNMSMAIKRVRRWAVLEKGGSSNNVFQKE 273
            +V LP++E+AI  MKV+ DD +  D  S    RV RWA+LE+GGS N VFQKE
Sbjct:   12 EVVLPLLELAIQQMKVLPDDGDSTDAFSKTRSRVNRWAILERGGSPNQVFQKE 64
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13812.2812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FLB4_ECTSI2.180e-9787.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI40_ECTSI1.400e-7286.61Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D8LNI2_ECTSI2.610e-1184.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5N5_ECTSI1.720e-754.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13812contigE-fasciculatus_F_contig13812:1338..2879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size540
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13812.2812.1prot_E-fasciculatus_F_contig13812.2812.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13812 1338..2879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927875.7383373-CDS-E-fasciculatus_F_contig13812:1337..14771622927875.7383373-CDS-E-fasciculatus_F_contig13812:1337..1477Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13812 1338..1477 -
1695995733.1834252-CDS-E-fasciculatus_F_contig13812:1337..14771695995733.1834252-CDS-E-fasciculatus_F_contig13812:1337..1477Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13812 1338..1477 -
1622927875.7544477-CDS-E-fasciculatus_F_contig13812:1913..20411622927875.7544477-CDS-E-fasciculatus_F_contig13812:1913..2041Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13812 1914..2041 -
1695995733.1943386-CDS-E-fasciculatus_F_contig13812:1913..20411695995733.1943386-CDS-E-fasciculatus_F_contig13812:1913..2041Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13812 1914..2041 -
1622927875.7694087-CDS-E-fasciculatus_F_contig13812:2336..24881622927875.7694087-CDS-E-fasciculatus_F_contig13812:2336..2488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13812 2337..2488 -
1695995733.2040403-CDS-E-fasciculatus_F_contig13812:2336..24881695995733.2040403-CDS-E-fasciculatus_F_contig13812:2336..2488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13812 2337..2488 -
1622927875.7834013-CDS-E-fasciculatus_F_contig13812:2759..28791622927875.7834013-CDS-E-fasciculatus_F_contig13812:2759..2879Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13812 2760..2879 -
1695995733.2135105-CDS-E-fasciculatus_F_contig13812:2759..28791695995733.2135105-CDS-E-fasciculatus_F_contig13812:2759..2879Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13812 2760..2879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13812.2812.1

>prot_E-fasciculatus_F_contig13812.2812.1 ID=prot_E-fasciculatus_F_contig13812.2812.1|Name=mRNA_E-fasciculatus_F_contig13812.2812.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=180bp
MRILVGSILELPLQAHRTGGWDSLEPEDIWGGGPVLFVDKVALPMVEVAI
GLMKVMIDDEELDNMSMAIKRVRRWAVLEKGGSSNNVFQKEFFRRMFLWA
HGDGQNLEGCFEITMETIGSADYEALACPYLKPGAREGPDDDSCDEVPET
LAPANSMLSDGDNGSDVGSDGVAMEEVST*
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mRNA from alignment at E-fasciculatus_F_contig13812:1338..2879-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13812.2812.1 ID=mRNA_E-fasciculatus_F_contig13812.2812.1|Name=mRNA_E-fasciculatus_F_contig13812.2812.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1542bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13812:1338..2879- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCATCTTGGTCGGATCCATCCTCGAATTGCCCCTTCAGGCCCACAG
GACGGGAGGGTGGGATTCCTTGGAGCCGGAGGACATATGGGGGGGGGGGC
CTGTCCTGTTCGTTGACAAGGTGTGCACAAATTTGGACAGCCTAGCGTGT
AGCCTTTTCAGCCATGTATTTAAATTTTGTTAGGTCATGACTTGAAGACC
GTGCAAGTTTGGACAGCCTAGCGTGTAGCCGGTGCAGCCACGCCTTGATT
TCCCCTGTCTCATGACTTGAAGACCGGTGTTTCTCTGGTCCTCGATGCCG
CGTACTCCGTTCGGTCGCCGCGTGTGATGCATTATATTATTCTACTCACA
CCTACTCCCTACACCTCTCGTTCATGCCGGACCTCGCACAGGTAGCCCTG
CCAATGGTGGAGGTGGCCATCGGGCTGATGAAGGTGATGATCGACGACGA
GGAGTTGGACAACATGTCCATGGCCATCAAGCGGGTCAGACGCTGGGCCG
TGCTCGAGAAGGGCGGGTCGTCCAATAACGTGTTCCAGAAAGAGTGAGTG
CAACGTAGGTCCGGCGTGTAGGCAACGTTAGACCACCCAGATATAACATG
GACTTTTGTTTAGTGTGTGTGTGCGTGCGTCCGTTGGACCAAGCTTGTGT
TCCCTCACGCCCTTGACATGTGGGAGACAATTTAGTCCACACCGGTCCTT
CCCAGCAGCAAAATGTGTTTGTGTGATCAACATTACTCTGTCGTCCTACA
ATCAGTGTATTTCACCGGTGGTGCATGTCGTGACACCTCCCTCTTCTTGT
CTACTCTGCCCCCCTCCGTCTCGCCAACTATCCTGCAGGTTCTTTCGGCG
CATGTTCCTGTGGGCGCATGGAGATGGCCAGAACCTGGAGGGCTGCTTCG
AAATCACGATGGAGACGATCGGCAGCGCCGATTACGAGGCACTAGCCTGC
CCGTACCTCAAGCCGGGTACGCTTTTCAAGTTTTACTAAGCACAGTGTTC
TTTCACCAAGATTCTTTTTAATGCCTACCGGGCTAGATATGGATCTTGGG
AGGGGTGGTGGGGTGGGTTGGTTCGTCTGCGTGGGACTGCTGTGCAAACC
TGATCCATTGTTTTAGTAACCCTTTCACACAAAAAGGACGCATCTGCTAC
TTTTGTCGCGTTCGCTTTTGTACCCCTGCGTGCAAGTGACGAAGAATTTC
ACCTCCTGTGTACTTGTATAGGGCTTTTGTGGTGCATGTGATGCTTGTTT
ACATGGTAACGGACGCGTCCTGCGACAGGCACATTGGTCAGCTCTCCTAA
CCCGTTCCAATCTTCAATACAATTTTGTACGCGCGACTATACTCCGTCCT
TCATCTTCCGATTGTTCTCCTTGTGGTGTCCTCAAACTTGAACATGTGGC
AGGTGCACGCGAGGGCCCCGACGATGACTCCTGTGACGAGGTGCCCGAGA
CCCTCGCCCCCGCCAACTCCATGCTCTCTGATGGTGACAACGGCTCTGAC
GTTGGCTCGGACGGTGTGGCCATGGAGGAGGTTTCGACCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13812:1338..2879-

>mRNA_E-fasciculatus_F_contig13812.2812.1 ID=mRNA_E-fasciculatus_F_contig13812.2812.1|Name=mRNA_E-fasciculatus_F_contig13812.2812.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1080bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13812:1338..2879- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCATCTTGGTCGGATCCATCCTCGAATTGCCCCTTCAGGCCCACAG
GACGGGAGGGTGGGATTCCTTGGAGCCGGAGGACATATGGGGGGGGGGGC
CTGTCCTGTTCGTTGACAAGATGCGCATCTTGGTCGGATCCATCCTCGAA
TTGCCCCTTCAGGCCCACAGGACGGGAGGGTGGGATTCCTTGGAGCCGGA
GGACATATGGGGGGGGGGGCCTGTCCTGTTCGTTGACAAGGTAGCCCTGC
CAATGGTGGAGGTGGCCATCGGGCTGATGAAGGTGATGATCGACGACGAG
GAGTTGGACAACATGTCCATGGCCATCAAGCGGGTCAGACGCTGGGCCGT
GCTCGAGAAGGGCGGGTCGTCCAATAACGTGTTCCAGAAAGAGTAGCCCT
GCCAATGGTGGAGGTGGCCATCGGGCTGATGAAGGTGATGATCGACGACG
AGGAGTTGGACAACATGTCCATGGCCATCAAGCGGGTCAGACGCTGGGCC
GTGCTCGAGAAGGGCGGGTCGTCCAATAACGTGTTCCAGAAAGAGTTCTT
TCGGCGCATGTTCCTGTGGGCGCATGGAGATGGCCAGAACCTGGAGGGCT
GCTTCGAAATCACGATGGAGACGATCGGCAGCGCCGATTACGAGGCACTA
GCCTGCCCGTACCTCAAGCCGGGTTCTTTCGGCGCATGTTCCTGTGGGCG
CATGGAGATGGCCAGAACCTGGAGGGCTGCTTCGAAATCACGATGGAGAC
GATCGGCAGCGCCGATTACGAGGCACTAGCCTGCCCGTACCTCAAGCCGG
GTGCACGCGAGGGCCCCGACGATGACTCCTGTGACGAGGTGCCCGAGACC
CTCGCCCCCGCCAACTCCATGCTCTCTGATGGTGACAACGGCTCTGACGT
TGGCTCGGACGGTGTGGCCATGGAGGAGGTTTCGACCTGAGTGCACGCGA
GGGCCCCGACGATGACTCCTGTGACGAGGTGCCCGAGACCCTCGCCCCCG
CCAACTCCATGCTCTCTGATGGTGACAACGGCTCTGACGTTGGCTCGGAC
GGTGTGGCCATGGAGGAGGTTTCGACCTGA
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