mRNA_E-fasciculatus_F_contig13788.2791.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13788.2791.1
Unique NamemRNA_E-fasciculatus_F_contig13788.2791.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13788.2791.1 vs. uniprot
Match: A0A6H5L179_9PHAE (Aurora kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L179_9PHAE)

HSP 1 Score: 506 bits (1303), Expect = 1.090e-159
Identity = 417/591 (70.56%), Postives = 429/591 (72.59%), Query Frame = 1 
Query:    7 AAPERGS-STPNGTLAEGTHGEAAGXXXXXXXXXXXXXAVTSNGDGEEYPSSFS-RGRSDYKAGPPPPFGEEGSSSSVGSG-------KGSRLAKGDAVNAAATAALAAATVAGNSTLTESTAGLGSSDLYSVSSSFLDGDYNTASFATLRAETVPTPATIGAXXXXXXXXXXXXXAQARFRASADGRVALAGRAAAVGGRDGIHDDGXXXXXXXXXXRARNSWPTARPSLEAAGGSGWTAERGRNDAGTAKRRXXXXXXXXXXXXXXXXXXXXARPESKERFGWKPA--------------GGKGRGGDAHENLVVARGVGSDKGLGLGKDLAGHEQXXXXXXXXXXXXXXXXXXXXXXXXXXXRPTRESSPHKQRQRNSAAASGITRPGERRFDLAGYSSSGSSSNSSLPCAPAXXXXXXXXXX-RQGDRVVARPPAPLPPQPLPMLEQEHSASLPQSQGLHGLRAAAAPAGRDLHETPSTAKASDGGVGVGXXXXCCFLGSTAAAVGDSVYASMSGQPTARKATXXXXXXXXXXXXR----LLVPLSTARVKPVAHRSGGKAAAVEVYPDGRASIAVGKRWLIASADG 1695
            AAPERGS STP GT+AEGTH EA G             AVTSN DG EY SS+S RGR DYKAGP P FGEEGSS+S           KG RL KG AV+          TVAGNSTLTESTAGLGSSDLYSVSSSFLDGDYNTASFATLRAETVPTPATIGAXXXXXXXXXXXXX QARFRASADG VAL GRAA  GGRDGI DDG  XX      RARN+WPTARP +E AGG   TA  G N AGTA+RR           XXXXX    AR ESKERFGWK A              GG+GRGG A EN+VVARGVGS K +GLGKDL     XXXXXXXXXXXXXXXXXXXXXXXXXX RPTRESSPHKQRQRNS  ASGITRPGER+FDLAGYSSS             XX      X  RQGDR VARPPAPLPPQPLPMLEQEH ASLPQSQGLHGLRA AA AGRDLHE  S  K SDG      XXX   LGSTAAAVGDSV AS SGQPTARKA XXXXXXXXXXXX     LL PLSTARVKPVAHRSGGKAAAVEVYPDGRASI+VGKRWLIASADG
Sbjct:  336 AAPERGSNSTPKGTIAEGTHKEAVGGGATACGGAGRR-AVTSNDDGGEYHSSYSSRGRLDYKAGPSPSFGEEGSSNSXXXXXXXXXXXKG-RLTKGAAVDXXXXXXX---TVAGNSTLTESTAGLGSSDLYSVSSSFLDGDYNTASFATLRAETVPTPATIGAXXXXXXXXXXXXXXQARFRASADGGVALDGRAAEAGGRDGIRDDGGGXXRGGR--RARNAWPTARPLVEVAGGGERTAGPGGNGAGTAERRGGISAGRKSTAXXXXXAG--ARLESKERFGWKGAAGGVTAAATTSLHAGGEGRGGYADENVVVARGVGSAKAVGLGKDLEHERXXXXXXXXXXXXXXXXXXXXXXXXXXXPRPTRESSPHKQRQRNSIPASGITRPGERQFDLAGYSSSXXXXXXXXXXXXXXXSPLARRXRQRQGDRGVARPPAPLPPQPLPMLEQEHLASLPQSQGLHGLRATAA-AGRDLHENMSIGKGSDGXX----XXXXYCLGSTAAAVGDSVSASRSGQPTARKAXXXXXXXXXXXXXXXXSCLLAPLSTARVKPVAHRSGGKAAAVEVYPDGRASISVGKRWLIASADG 912
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BLAST of mRNA_E-fasciculatus_F_contig13788.2791.1 vs. uniprot
Match: D7FZ88_ECTSI (Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ88_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 7.380e-59
Identity = 191/281 (67.97%), Postives = 198/281 (70.46%), Query Frame = 1 
Query:    1 AAAAPERGSS-TPNGTLAEGTHGEAAGXXXXXXXXXXXXXAVTSNGDGEEYPS-SFSRGRSDYKAGPPPPFGEEGSSSSVGSGKGSRLAKGDAVNAAATAALAAATVAGNSTLTESTAGLGSSDLYSVSSSFLDGDYNTASFATLRAETVPTPATIGAXXXXXXXXXXXXXAQARFRASADGRVALAGRAAAVGGRDGIHDDGXXXXXXXXXXRARNSWPTARPSLEAAGGSGWTAERGRNDAGTAKRRXXXXXXXXXXXXXXXXXXXXARPESKERFGWK 837
            A AAPERGSS TPNGTLAE T      XXXXXXXXXXXXX   ++ +GEEYPS   SRGR DYKAGP PPFGEEGS                             T+AGNSTLTESTAGLGSSDLYSVSSSFLDGDYN ASFATLRAETVPTPATIGAXXXXXXXXXXXXX QARFRASADG VAL GRAAA GGRDGI D  XXXXXXXXX RARN+WPTARP +EAAGG   TA RG N AGTA+RR           X        AR ESKERFGWK
Sbjct:  336 APAAPERGSSSTPNGTLAEDTREXXXXXXXXXXXXXXXXXXXXNDDEGEEYPSYCSSRGRLDYKAGPSPPFGEEGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLAGNSTLTESTAGLGSSDLYSVSSSFLDGDYNMASFATLRAETVPTPATIGAXXXXXXXXXXXXXXQARFRASADGGVALDGRAAAAGGRDGIRDXXXXXXXXXXXGRARNAWPTARPLVEAAGGGERTAGRGGNGAGTAERRGGISAGRRSTAXGRSSAG--ARLESKERFGWK 614
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13788.2791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L179_9PHAE1.090e-15970.56Aurora kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FZ88_ECTSI7.380e-5967.97Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13788contigE-fasciculatus_F_contig13788:1837..3533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.6
Seed ortholog evalue1.2e-55
Seed eggNOG ortholog2880.D7FZ88
KEGG koko:K06660,ko:K08863
KEGG Pathwayko04068,ko04111,ko04113,map04068,map04111,map04113
EggNOG free text desc.regulation of centriole replication
EggNOG OGsKOG0575@1,KOG0575@2759
EC2.7.11.21
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size1699
Cds size1695
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927870.4711032-CDS-E-fasciculatus_F_contig13788:1836..35311622927870.4711032-CDS-E-fasciculatus_F_contig13788:1836..3531Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13788 1837..3531 +
1695995731.8202753-CDS-E-fasciculatus_F_contig13788:1836..35311695995731.8202753-CDS-E-fasciculatus_F_contig13788:1836..3531Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13788 1837..3531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13788.2791.1prot_E-fasciculatus_F_contig13788.2791.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13788 1837..3531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13788.2791.1

>prot_E-fasciculatus_F_contig13788.2791.1 ID=prot_E-fasciculatus_F_contig13788.2791.1|Name=mRNA_E-fasciculatus_F_contig13788.2791.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=565bp
AAAAPERGSSTPNGTLAEGTHGEAAGGGGEAASGGGGRRAVTSNGDGEEY
PSSFSRGRSDYKAGPPPPFGEEGSSSSVGSGKGSRLAKGDAVNAAATAAL
AAATVAGNSTLTESTAGLGSSDLYSVSSSFLDGDYNTASFATLRAETVPT
PATIGAGAAAAAARVRRATAQARFRASADGRVALAGRAAAVGGRDGIHDD
GGGGGGGGGGGRARNSWPTARPSLEAAGGSGWTAERGRNDAGTAKRRGGG
GIAGGTSTAGRRSSAAAARPESKERFGWKPAGGKGRGGDAHENLVVARGV
GSDKGLGLGKDLAGHEQQRRRRQQHQQSKQLQQQQQPRRRNRRPRPTRES
SPHKQRQRNSAAASGITRPGERRFDLAGYSSSGSSSNSSLPCAPAASPSA
RRRRQRQGDRVVARPPAPLPPQPLPMLEQEHSASLPQSQGLHGLRAAAAP
AGRDLHETPSTAKASDGGVGVGGGGGCCFLGSTAAAVGDSVYASMSGQPT
ARKATAAAAASGSSGGGRLLVPLSTARVKPVAHRSGGKAAAVEVYPDGRA
SIAVGKRWLIASADG
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mRNA from alignment at E-fasciculatus_F_contig13788:1837..3533+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13788.2791.1 ID=mRNA_E-fasciculatus_F_contig13788.2791.1|Name=mRNA_E-fasciculatus_F_contig13788.2791.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1697bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13788:1837..3533+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGCAGCAGCACCCGAGCGGGGAAGCAGCACTCCCAACGGCACCCTCGC
CGAAGGTACTCACGGAGAGGCAGCGGGGGGGGGAGGAGAGGCGGCTAGCG
GGGGTGGTGGGAGGCGAGCCGTAACGTCGAACGGCGACGGAGAAGAATAC
CCTTCTTCTTTTTCCAGGGGAAGATCGGACTACAAAGCCGGACCACCGCC
GCCGTTCGGCGAGGAGGGCAGCAGCAGCAGCGTCGGCAGCGGCAAAGGTA
GTAGGCTAGCCAAAGGGGATGCCGTCAACGCCGCTGCCACCGCCGCCTTA
GCCGCAGCGACCGTAGCGGGCAACAGCACCCTCACGGAGTCCACGGCGGG
GCTCGGGTCCTCCGACCTCTACTCCGTAAGCTCCAGCTTCTTGGACGGGG
ATTACAACACGGCCTCCTTTGCGACCCTCAGGGCAGAGACTGTGCCCACC
CCGGCGACCATCGGCGCCGGAGCCGCTGCGGCCGCCGCCCGCGTCCGGCG
TGCCACCGCCCAAGCCCGGTTCCGGGCTTCCGCAGACGGGAGAGTCGCGC
TCGCCGGCAGGGCAGCAGCGGTCGGGGGAAGGGACGGGATCCACGATGAT
GGCGGCGGCGGTGGCGGCGGTGGTGGTGGTGGGAGAGCGAGAAATTCGTG
GCCAACCGCGCGACCATCGCTTGAGGCAGCGGGCGGTAGTGGCTGGACGG
CAGAGCGGGGGCGAAATGACGCCGGCACCGCGAAGAGGAGGGGTGGCGGC
GGCATCGCGGGAGGAACAAGCACGGCGGGAAGGCGCTCCTCGGCTGCTGC
TGCCAGGCCGGAGTCGAAGGAGCGATTCGGGTGGAAGCCCGCCGGTGGCA
AAGGGCGCGGGGGGGACGCACACGAGAATTTGGTGGTGGCTAGAGGTGTT
GGCTCTGACAAAGGGCTTGGCCTCGGCAAGGATTTGGCAGGGCACGAGCA
GCAACGGCGGCGGCGGCAGCAACACCAGCAGAGTAAGCAGCTGCAGCAGC
AGCAGCAGCCCCGGCGACGGAATCGAAGGCCTCGACCCACCCGGGAATCG
TCTCCCCACAAGCAACGGCAGCGAAACAGCGCAGCAGCAAGCGGCATCAC
CAGGCCTGGGGAGCGACGGTTCGATCTCGCAGGCTACAGCAGCAGCGGCA
GCTCGAGCAACAGCTCCCTGCCGTGCGCCCCCGCAGCAAGCCCATCGGCT
CGCCGTCGGCGACAGCGGCAGGGGGACAGGGTTGTCGCGAGACCTCCCGC
GCCGCTCCCTCCTCAACCGCTGCCGATGCTCGAGCAGGAGCACTCGGCAA
GCTTACCCCAGTCTCAAGGGCTTCACGGGCTTCGTGCCGCGGCCGCCCCC
GCGGGGCGAGACCTCCACGAGACACCGTCCACCGCCAAAGCCAGTGACGG
CGGCGTCGGCGTCGGCGGCGGCGGCGGCTGCTGCTTCTTGGGGTCGACAG
CGGCTGCGGTTGGCGACTCCGTTTACGCGTCCATGTCGGGACAGCCGACG
GCGAGAAAAGCGACTGCTGCCGCTGCTGCTTCTGGCAGCAGCGGCGGGGG
TCGTCTCCTGGTGCCGTTGTCCACCGCCCGCGTGAAGCCGGTGGCCCACC
GCTCGGGAGGCAAGGCGGCGGCGGTCGAGGTCTACCCAGACGGGCGCGCG
AGCATCGCCGTGGGAAAGCGGTGGCTGATCGCTTCCGCGGACGGCCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13788:1837..3533+

>mRNA_E-fasciculatus_F_contig13788.2791.1 ID=mRNA_E-fasciculatus_F_contig13788.2791.1|Name=mRNA_E-fasciculatus_F_contig13788.2791.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3390bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13788:1837..3533+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGCAGCAGCACCCGAGCGGGGAAGCAGCACTCCCAACGGCACCCTCGC
CGAAGGTACTCACGGAGAGGCAGCGGGGGGGGGAGGAGAGGCGGCTAGCG
GGGGTGGTGGGAGGCGAGCCGTAACGTCGAACGGCGACGGAGAAGAATAC
CCTTCTTCTTTTTCCAGGGGAAGATCGGACTACAAAGCCGGACCACCGCC
GCCGTTCGGCGAGGAGGGCAGCAGCAGCAGCGTCGGCAGCGGCAAAGGTA
GTAGGCTAGCCAAAGGGGATGCCGTCAACGCCGCTGCCACCGCCGCCTTA
GCCGCAGCGACCGTAGCGGGCAACAGCACCCTCACGGAGTCCACGGCGGG
GCTCGGGTCCTCCGACCTCTACTCCGTAAGCTCCAGCTTCTTGGACGGGG
ATTACAACACGGCCTCCTTTGCGACCCTCAGGGCAGAGACTGTGCCCACC
CCGGCGACCATCGGCGCCGGAGCCGCTGCGGCCGCCGCCCGCGTCCGGCG
TGCCACCGCCCAAGCCCGGTTCCGGGCTTCCGCAGACGGGAGAGTCGCGC
TCGCCGGCAGGGCAGCAGCGGTCGGGGGAAGGGACGGGATCCACGATGAT
GGCGGCGGCGGTGGCGGCGGTGGTGGTGGTGGGAGAGCGAGAAATTCGTG
GCCAACCGCGCGACCATCGCTTGAGGCAGCGGGCGGTAGTGGCTGGACGG
CAGAGCGGGGGCGAAATGACGCCGGCACCGCGAAGAGGAGGGGTGGCGGC
GGCATCGCGGGAGGAACAAGCACGGCGGGAAGGCGCTCCTCGGCTGCTGC
TGCCAGGCCGGAGTCGAAGGAGCGATTCGGGTGGAAGCCCGCCGGTGGCA
AAGGGCGCGGGGGGGACGCACACGAGAATTTGGTGGTGGCTAGAGGTGTT
GGCTCTGACAAAGGGCTTGGCCTCGGCAAGGATTTGGCAGGGCACGAGCA
GCAACGGCGGCGGCGGCAGCAACACCAGCAGAGTAAGCAGCTGCAGCAGC
AGCAGCAGCCCCGGCGACGGAATCGAAGGCCTCGACCCACCCGGGAATCG
TCTCCCCACAAGCAACGGCAGCGAAACAGCGCAGCAGCAAGCGGCATCAC
CAGGCCTGGGGAGCGACGGTTCGATCTCGCAGGCTACAGCAGCAGCGGCA
GCTCGAGCAACAGCTCCCTGCCGTGCGCCCCCGCAGCAAGCCCATCGGCT
CGCCGTCGGCGACAGCGGCAGGGGGACAGGGTTGTCGCGAGACCTCCCGC
GCCGCTCCCTCCTCAACCGCTGCCGATGCTCGAGCAGGAGCACTCGGCAA
GCTTACCCCAGTCTCAAGGGCTTCACGGGCTTCGTGCCGCGGCCGCCCCC
GCGGGGCGAGACCTCCACGAGACACCGTCCACCGCCAAAGCCAGTGACGG
CGGCGTCGGCGTCGGCGGCGGCGGCGGCTGCTGCTTCTTGGGGTCGACAG
CGGCTGCGGTTGGCGACTCCGTTTACGCGTCCATGTCGGGACAGCCGACG
GCGAGAAAAGCGACTGCTGCCGCTGCTGCTTCTGGCAGCAGCGGCGGGGG
TCGTCTCCTGGTGCCGTTGTCCACCGCCCGCGTGAAGCCGGTGGCCCACC
GCTCGGGAGGCAAGGCGGCGGCGGTCGAGGTCTACCCAGACGGGCGCGCG
AGCATCGCCGTGGGAAAGCGGTGGCTGATCGCTTCCGCGGACGGCGCAGC
AGCAGCACCCGAGCGGGGAAGCAGCACTCCCAACGGCACCCTCGCCGAAG
GTACTCACGGAGAGGCAGCGGGGGGGGGAGGAGAGGCGGCTAGCGGGGGT
GGTGGGAGGCGAGCCGTAACGTCGAACGGCGACGGAGAAGAATACCCTTC
TTCTTTTTCCAGGGGAAGATCGGACTACAAAGCCGGACCACCGCCGCCGT
TCGGCGAGGAGGGCAGCAGCAGCAGCGTCGGCAGCGGCAAAGGTAGTAGG
CTAGCCAAAGGGGATGCCGTCAACGCCGCTGCCACCGCCGCCTTAGCCGC
AGCGACCGTAGCGGGCAACAGCACCCTCACGGAGTCCACGGCGGGGCTCG
GGTCCTCCGACCTCTACTCCGTAAGCTCCAGCTTCTTGGACGGGGATTAC
AACACGGCCTCCTTTGCGACCCTCAGGGCAGAGACTGTGCCCACCCCGGC
GACCATCGGCGCCGGAGCCGCTGCGGCCGCCGCCCGCGTCCGGCGTGCCA
CCGCCCAAGCCCGGTTCCGGGCTTCCGCAGACGGGAGAGTCGCGCTCGCC
GGCAGGGCAGCAGCGGTCGGGGGAAGGGACGGGATCCACGATGATGGCGG
CGGCGGTGGCGGCGGTGGTGGTGGTGGGAGAGCGAGAAATTCGTGGCCAA
CCGCGCGACCATCGCTTGAGGCAGCGGGCGGTAGTGGCTGGACGGCAGAG
CGGGGGCGAAATGACGCCGGCACCGCGAAGAGGAGGGGTGGCGGCGGCAT
CGCGGGAGGAACAAGCACGGCGGGAAGGCGCTCCTCGGCTGCTGCTGCCA
GGCCGGAGTCGAAGGAGCGATTCGGGTGGAAGCCCGCCGGTGGCAAAGGG
CGCGGGGGGGACGCACACGAGAATTTGGTGGTGGCTAGAGGTGTTGGCTC
TGACAAAGGGCTTGGCCTCGGCAAGGATTTGGCAGGGCACGAGCAGCAAC
GGCGGCGGCGGCAGCAACACCAGCAGAGTAAGCAGCTGCAGCAGCAGCAG
CAGCCCCGGCGACGGAATCGAAGGCCTCGACCCACCCGGGAATCGTCTCC
CCACAAGCAACGGCAGCGAAACAGCGCAGCAGCAAGCGGCATCACCAGGC
CTGGGGAGCGACGGTTCGATCTCGCAGGCTACAGCAGCAGCGGCAGCTCG
AGCAACAGCTCCCTGCCGTGCGCCCCCGCAGCAAGCCCATCGGCTCGCCG
TCGGCGACAGCGGCAGGGGGACAGGGTTGTCGCGAGACCTCCCGCGCCGC
TCCCTCCTCAACCGCTGCCGATGCTCGAGCAGGAGCACTCGGCAAGCTTA
CCCCAGTCTCAAGGGCTTCACGGGCTTCGTGCCGCGGCCGCCCCCGCGGG
GCGAGACCTCCACGAGACACCGTCCACCGCCAAAGCCAGTGACGGCGGCG
TCGGCGTCGGCGGCGGCGGCGGCTGCTGCTTCTTGGGGTCGACAGCGGCT
GCGGTTGGCGACTCCGTTTACGCGTCCATGTCGGGACAGCCGACGGCGAG
AAAAGCGACTGCTGCCGCTGCTGCTTCTGGCAGCAGCGGCGGGGGTCGTC
TCCTGGTGCCGTTGTCCACCGCCCGCGTGAAGCCGGTGGCCCACCGCTCG
GGAGGCAAGGCGGCGGCGGTCGAGGTCTACCCAGACGGGCGCGCGAGCAT
CGCCGTGGGAAAGCGGTGGCTGATCGCTTCCGCGGACGGC
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