mRNA_E-fasciculatus_F_contig13746.2766.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13746.2766.1
Unique NamemRNA_E-fasciculatus_F_contig13746.2766.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13746.2766.1 vs. uniprot
Match: D7G7L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L6_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.360e-18
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:  187 MSVASVGVRISDDFDELPLFETPPLNGPTAQIATASRGVHMRAVE 321
            MSVASVGVRISDDFDELPLFETPPLNGPTAQIATA+RGVHMRAVE
Sbjct:    1 MSVASVGVRISDDFDELPLFETPPLNGPTAQIATATRGVHMRAVE 45
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13746.2766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7L6_ECTSI1.360e-1897.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13746contigE-fasciculatus_F_contig13746:380..2678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size382
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13746.2766.1prot_E-fasciculatus_F_contig13746.2766.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13746 381..2678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927868.0055342-CDS-E-fasciculatus_F_contig13746:380..4851622927868.0055342-CDS-E-fasciculatus_F_contig13746:380..485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13746 381..485 -
1695995730.7392218-CDS-E-fasciculatus_F_contig13746:380..4851695995730.7392218-CDS-E-fasciculatus_F_contig13746:380..485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13746 381..485 -
1622927868.0163305-CDS-E-fasciculatus_F_contig13746:1325..14751622927868.0163305-CDS-E-fasciculatus_F_contig13746:1325..1475Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13746 1326..1475 -
1695995730.7472248-CDS-E-fasciculatus_F_contig13746:1325..14751695995730.7472248-CDS-E-fasciculatus_F_contig13746:1325..1475Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13746 1326..1475 -
1622927868.027912-CDS-E-fasciculatus_F_contig13746:2552..26781622927868.027912-CDS-E-fasciculatus_F_contig13746:2552..2678Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13746 2553..2678 -
1695995730.7550275-CDS-E-fasciculatus_F_contig13746:2552..26781695995730.7550275-CDS-E-fasciculatus_F_contig13746:2552..2678Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13746 2553..2678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13746.2766.1

>prot_E-fasciculatus_F_contig13746.2766.1 ID=prot_E-fasciculatus_F_contig13746.2766.1|Name=mRNA_E-fasciculatus_F_contig13746.2766.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp
ETKGARESSPAGGESIYTSGKENAWRRGRFCGPGGRRDFLAAKASRTAVS
AAAVVPGTAGGIMSVASVGVRISDDFDELPLFETPPLNGPTAQIATASRG
VHMRAVESRETSCFSRPTARTVATAAG
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mRNA from alignment at E-fasciculatus_F_contig13746:380..2678-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13746.2766.1 ID=mRNA_E-fasciculatus_F_contig13746.2766.1|Name=mRNA_E-fasciculatus_F_contig13746.2766.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2299bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13746:380..2678- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGACGAAAGGAGCAAGGGAGAGTTCCCCGGCTGGAGGAGAGTCGATCTA
CACAAGTGGGAAAGAGAACGCTTGGAGACGTGGTCGGTTCTGTGGCCCGG
GAGGAAGACGAGATTTCCTTGCAGCTGTGAGTCTTGCCGTTGTCTCAAGC
TCTCTCTCCCAGCCGTTTGACTGTTTTCATCTGCCTACTGCCGGTGTCTG
GAATGCAATATGTACACCACCGCTGCTGCTGCAGACAGCAGCAACCCCAC
AGAGATAGAGAGAGAGGAGAGAGCAAACTGACCCGTGCAGATGCGAATTA
CCCGCTTAGAGAAGGAAGGTTGGCTATCTTTTGGTGCTGCATCACGCGTT
GAGTCGTCCAACATCCCCCCCGTTATTGCATCACACAGCAGTGACTCGTT
CAACTACAAAGCAACACCGCGTCCTGGAAGACAACGGCGGAGGCACGCAC
CAATTAGTATTACATTTGTAGCAGTCTAACGACCTTCCACCGATAGATAC
CCTTGCACAGCACAGGCAGCTATAGCAGTGGGTACGGGCAGCGTAGCTAC
ATGTGGCCTATTTGAGAAGATGCCTCCGTCAGTGGCCCTATATGCTCATG
CTCCTTTCGAAGCACTACTCCATAGCACTCCATACAACAGCAGAACCTCC
GCTAGGCCGACGAAGGCAGTACGCATACAACAAGGTACTATACGCTCGGG
TTGAGAACCGCCGTGATGCTTCGTCCATTATTACCAATCCGTATTCAACG
GCCATTTAAAAGATAGTACACCGTGTTATGTCTATTTTCACGGTAATTTA
CTCTCGACTATTGTACTACTGTCGGAGGCGCGGCGTCGGAATGATAATTT
TGTGTCAAGGGAGTTGAAACTGACAGCAGGAGTGTTAGCTCGGGTACGGC
TGTAGTTGGCTAGGGTTGCTGTTCAGCGTCAGTCAATTTTAATCAAGAAG
AAGAGGCTCGCACCCGAGGCTCCAATATGCCTACTCGGCACGACACGATT
AGCCCTAACAACCAAACATGCGCAGGCAGCCCTCCTGCAAATCTCACCGC
GGCGTGAAGCAAGCAACTCTCTCCTGGGAAGAAACGACGGGAGTTTCTGT
TTACACGTGGACAGCTCCCTCCGCTGGCTGCTGCATGCACGAATCTCTCA
TTTCCCTGCGTGCGCTACGTGTTGACTGCTGCTGCTGCTGCTGCTGCTCG
CAGAAAGCATCACGCACGGCAGTATCAGCCGCGGCGGTGGTACCGGGAAC
CGCGGGCGGCATCATGTCGGTGGCGTCCGTGGGCGTGCGGATTTCGGATG
ACTTCGATGAGCTCCCGCTGTTCGAAACGCCCCCACTGAACGGGCCCACA
GCCGTGAGTGTCGTTCGAGACGACGGGGTTGAAGTTTGAAGTACAGAGGT
TGTGGGGTCGGCGAGTACATGAGACGTTGACGAGTACATGAGTGTCTTTG
AGACGAGACAAAGGAGAGGAGGCATGACGTACACAGGTTGCGGGGTCGGC
GAGTAGAACAAGACGACGACGACGACGACTTGTTCGTTGCCGTCGTTGCA
GCTCTGTAGGGTCAGCACTTTGACGCCTGTTTGCGATGGGAGCACCGAAC
CTCCCGCTCTATCAGGCAGGAAGGACCTATGCAAAAGTCAGGCTTTTCTT
GAGCAAATGGGTGTAAGTGCCTGGTGAGAGCCACTGGCTAGAGTCACTTG
GGCGGAAGACTTGGCAGCCGAGAGCACTACGGTGGAGTTTACACGATATC
ACGACCCTATCGCTCGAGAAGGAGCATGTGTTTGCTTGGCCCAGGAAGAA
GCTGGGGCTTCTGAGATAGCCTCCTCTGCCGTTTTATTCGCCGGCGTAAC
GCCCTATTGCATTTCGCTGTACTGCTGGAACTGCGATAGCCCGCAGTTGT
GGTAGGAGGCAGGTCGTTTGCAAATTCGCACGCTAGAGACTTCGTCGCCC
AACACCCTTTGTTCTTAGAGCTAAAGATTACAGATACAATGGAAGACAGA
CAACACGTTAGAGATAACATCCCTATCGAAGGCATGTGTTGTCGTCTGGA
CAGCAGTGACTGCCGTTGAGAAAGAGCTTGCTGGAAACTGGGCTTATTTT
GAGTCTGGTCTGGCCTAGGCACTGAAGTACCAGTTTCTTCCGTATCTTGT
TTCCTTTTTTTTTTTTCCCGTTTTCGGGCTGCCGGCGCGCCAGCAAATCG
CCACCGCCAGCAGGGGCGTGCACATGAGGGCGGTGGAAAGCAGGGAGACT
TCCTGCTTCTCGAGGCCGACAGCCAGGACGGTGGCCACGGCGGCGGGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13746:380..2678-

>mRNA_E-fasciculatus_F_contig13746.2766.1 ID=mRNA_E-fasciculatus_F_contig13746.2766.1|Name=mRNA_E-fasciculatus_F_contig13746.2766.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13746:380..2678- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGACGAAAGGAGCAAGGGAGAGTTCCCCGGCTGGAGGAGAGTCGATCTA
CACAAGTGGGAAAGAGAACGCTTGGAGACGTGGTCGGTTCTGTGGCCCGG
GAGGAAGACGAGATTTCCTTGCAGCTGAGACGAAAGGAGCAAGGGAGAGT
TCCCCGGCTGGAGGAGAGTCGATCTACACAAGTGGGAAAGAGAACGCTTG
GAGACGTGGTCGGTTCTGTGGCCCGGGAGGAAGACGAGATTTCCTTGCAG
CTAAAGCATCACGCACGGCAGTATCAGCCGCGGCGGTGGTACCGGGAACC
GCGGGCGGCATCATGTCGGTGGCGTCCGTGGGCGTGCGGATTTCGGATGA
CTTCGATGAGCTCCCGCTGTTCGAAACGCCCCCACTGAACGGGCCCACAG
CCAAAGCATCACGCACGGCAGTATCAGCCGCGGCGGTGGTACCGGGAACC
GCGGGCGGCATCATGTCGGTGGCGTCCGTGGGCGTGCGGATTTCGGATGA
CTTCGATGAGCTCCCGCTGTTCGAAACGCCCCCACTGAACGGGCCCACAG
CCCAAATCGCCACCGCCAGCAGGGGCGTGCACATGAGGGCGGTGGAAAGC
AGGGAGACTTCCTGCTTCTCGAGGCCGACAGCCAGGACGGTGGCCACGGC
GGCGGGACAAATCGCCACCGCCAGCAGGGGCGTGCACATGAGGGCGGTGG
AAAGCAGGGAGACTTCCTGCTTCTCGAGGCCGACAGCCAGGACGGTGGCC
ACGGCGGCGGGA
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