mRNA_E-fasciculatus_F_contig1372.2749.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1372.2749.1
Unique NamemRNA_E-fasciculatus_F_contig1372.2749.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1372.2749.1 vs. uniprot
Match: A0A6H5JYU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU0_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.650e-7
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = -3 
Query:  230 MAPDNAPLDHQSAQGAQPKPPEADAPALMVAPAAEHQ 340
            MAPD AP+DHQSA+GAQ K PEA+APA MVAPA++ Q
Sbjct:    1 MAPDKAPMDHQSAEGAQLKTPEAEAPARMVAPASKRQ 37
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BLAST of mRNA_E-fasciculatus_F_contig1372.2749.1 vs. uniprot
Match: D7FHS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS5_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 5.170e-7
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = -3 
Query:  242 MAPDNAPLDHQSAQGAQPKPPEADAPALMVAPA 340
            MAPD APLDHQSAQGAQPK PEA+ PA  VAPA
Sbjct:    1 MAPDKAPLDHQSAQGAQPKTPEAEVPAWTVAPA 33
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1372.2749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JYU0_9PHAE2.650e-772.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHS5_ECTSI5.170e-781.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1372contigE-fasciculatus_F_contig1372:114..455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size344
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927865.8207355-CDS-E-fasciculatus_F_contig1372:113..4551622927865.8207355-CDS-E-fasciculatus_F_contig1372:113..455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1372 114..455 +
1695995729.75307-CDS-E-fasciculatus_F_contig1372:113..4551695995729.75307-CDS-E-fasciculatus_F_contig1372:113..455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1372 114..455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1372.2749.1prot_E-fasciculatus_F_contig1372.2749.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1372 114..455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1372.2749.1

>prot_E-fasciculatus_F_contig1372.2749.1 ID=prot_E-fasciculatus_F_contig1372.2749.1|Name=mRNA_E-fasciculatus_F_contig1372.2749.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=114bp
SAWRDHTHIRLLSRACTDSTPPSKQIHYAESNQREAKALPVCTLPRKPTP
IGLSVGAAGGRENRRWMMIEICISNTPGVQLRVRPSTRGHRLRGAWVVPP
AQTGGPKARCRGP*
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mRNA from alignment at E-fasciculatus_F_contig1372:114..455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1372.2749.1 ID=mRNA_E-fasciculatus_F_contig1372.2749.1|Name=mRNA_E-fasciculatus_F_contig1372.2749.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=342bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1372:114..455+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCGCTTGGCGTGATCACACACACATACGTTTGTTATCACGCGCGTGCAC
CGACTCTACCCCTCCCTCAAAACAAATCCACTACGCTGAGAGCAACCAAC
GTGAGGCAAAAGCACTGCCAGTTTGCACGCTCCCCCGGAAGCCCACACCG
ATAGGTTTGTCGGTGGGGGCGGCTGGAGGCAGAGAGAACCGCCGATGGAT
GATGATAGAAATCTGTATATCCAACACACCTGGTGTTCAGCTGCGGGTGC
GACCATCAACGCGGGGGCATCGGCTTCGGGGGGCTTGGGTTGTGCCCCCT
GCGCAGACTGGTGGTCCAAAGGCGCGTTGTCGGGGGCCATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1372:114..455+

>mRNA_E-fasciculatus_F_contig1372.2749.1 ID=mRNA_E-fasciculatus_F_contig1372.2749.1|Name=mRNA_E-fasciculatus_F_contig1372.2749.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1372:114..455+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCGCTTGGCGTGATCACACACACATACGTTTGTTATCACGCGCGTGCAC
CGACTCTACCCCTCCCTCAAAACAAATCCACTACGCTGAGAGCAACCAAC
GTGAGGCAAAAGCACTGCCAGTTTGCACGCTCCCCCGGAAGCCCACACCG
ATAGGTTTGTCGGTGGGGGCGGCTGGAGGCAGAGAGAACCGCCGATGGAT
GATGATAGAAATCTGTATATCCAACACACCTGGTGTTCAGCTGCGGGTGC
GACCATCAACGCGGGGGCATCGGCTTCGGGGGGCTTGGGTTGTGCCCCCT
GCGCAGACTGGTGGTCCAAAGGCGCGTTGTCGGGGGCCATAGTCCGCTTG
GCGTGATCACACACACATACGTTTGTTATCACGCGCGTGCACCGACTCTA
CCCCTCCCTCAAAACAAATCCACTACGCTGAGAGCAACCAACGTGAGGCA
AAAGCACTGCCAGTTTGCACGCTCCCCCGGAAGCCCACACCGATAGGTTT
GTCGGTGGGGGCGGCTGGAGGCAGAGAGAACCGCCGATGGATGATGATAG
AAATCTGTATATCCAACACACCTGGTGTTCAGCTGCGGGTGCGACCATCA
ACGCGGGGGCATCGGCTTCGGGGGGCTTGGGTTGTGCCCCCTGCGCAGAC
TGGTGGTCCAAAGGCGCGTTGTCGGGGGCCATAG
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