mRNA_E-fasciculatus_F_contig13694.2731.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13694.2731.1
Unique NamemRNA_E-fasciculatus_F_contig13694.2731.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13694.2731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13694contigE-fasciculatus_F_contig13694:2503..2973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927863.4538271-CDS-E-fasciculatus_F_contig13694:2502..29731622927863.4538271-CDS-E-fasciculatus_F_contig13694:2502..2973Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13694 2503..2973 +
1695995728.6087322-CDS-E-fasciculatus_F_contig13694:2502..29731695995728.6087322-CDS-E-fasciculatus_F_contig13694:2502..2973Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13694 2503..2973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13694.2731.1prot_E-fasciculatus_F_contig13694.2731.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13694 2503..2973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13694.2731.1

>prot_E-fasciculatus_F_contig13694.2731.1 ID=prot_E-fasciculatus_F_contig13694.2731.1|Name=mRNA_E-fasciculatus_F_contig13694.2731.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=157bp
PTPGHPPAAGSCSAADGSCAEPPAAAVVTRAAFAAAVSPAVESIVAAAAL
DDCASVPHVDARLLAFSSSSCRARRSLVSKREGGGSTVSPPPPPPPSGSR
RWWWWSPATPAAEAPPDTAPAAAAAAAAQAPIPSPCPHDSSPALPWPMKA
AEPSRFG
back to top

mRNA from alignment at E-fasciculatus_F_contig13694:2503..2973+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13694.2731.1 ID=mRNA_E-fasciculatus_F_contig13694.2731.1|Name=mRNA_E-fasciculatus_F_contig13694.2731.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=471bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13694:2503..2973+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCACCCCTGGCCACCCGCCGGCAGCGGGGAGTTGTTCCGCGGCGGACGG
GTCCTGTGCCGAGCCGCCGGCGGCGGCCGTGGTGACCCGTGCCGCCTTCG
CCGCCGCCGTGTCTCCGGCGGTCGAGAGCATCGTGGCCGCCGCCGCCTTG
GACGACTGCGCCAGCGTGCCCCACGTGGACGCGAGGCTCTTGGCCTTCTC
CTCCTCGTCGTGCCGCGCCAGGCGCTCGTTGGTCAGCAAGCGAGAGGGGG
GAGGCAGCACGGTGTCGCCGCCGCCGCCGCCGCCTCCCTCCGGATCGCGG
CGGTGGTGGTGGTGGTCGCCGGCCACACCGGCGGCGGAGGCACCACCAGA
CACGGCACCTGCAGCAGCAGCAGCAGCAGCAGCGCAAGCACCGATACCTT
CGCCGTGTCCACACGACTCGAGTCCGGCGCTCCCGTGGCCCATGAAGGCT
GCTGAGCCATCGAGGTTCGGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13694:2503..2973+

>mRNA_E-fasciculatus_F_contig13694.2731.1 ID=mRNA_E-fasciculatus_F_contig13694.2731.1|Name=mRNA_E-fasciculatus_F_contig13694.2731.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=942bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13694:2503..2973+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCACCCCTGGCCACCCGCCGGCAGCGGGGAGTTGTTCCGCGGCGGACGG
GTCCTGTGCCGAGCCGCCGGCGGCGGCCGTGGTGACCCGTGCCGCCTTCG
CCGCCGCCGTGTCTCCGGCGGTCGAGAGCATCGTGGCCGCCGCCGCCTTG
GACGACTGCGCCAGCGTGCCCCACGTGGACGCGAGGCTCTTGGCCTTCTC
CTCCTCGTCGTGCCGCGCCAGGCGCTCGTTGGTCAGCAAGCGAGAGGGGG
GAGGCAGCACGGTGTCGCCGCCGCCGCCGCCGCCTCCCTCCGGATCGCGG
CGGTGGTGGTGGTGGTCGCCGGCCACACCGGCGGCGGAGGCACCACCAGA
CACGGCACCTGCAGCAGCAGCAGCAGCAGCAGCGCAAGCACCGATACCTT
CGCCGTGTCCACACGACTCGAGTCCGGCGCTCCCGTGGCCCATGAAGGCT
GCTGAGCCATCGAGGTTCGGGCCCACCCCTGGCCACCCGCCGGCAGCGGG
GAGTTGTTCCGCGGCGGACGGGTCCTGTGCCGAGCCGCCGGCGGCGGCCG
TGGTGACCCGTGCCGCCTTCGCCGCCGCCGTGTCTCCGGCGGTCGAGAGC
ATCGTGGCCGCCGCCGCCTTGGACGACTGCGCCAGCGTGCCCCACGTGGA
CGCGAGGCTCTTGGCCTTCTCCTCCTCGTCGTGCCGCGCCAGGCGCTCGT
TGGTCAGCAAGCGAGAGGGGGGAGGCAGCACGGTGTCGCCGCCGCCGCCG
CCGCCTCCCTCCGGATCGCGGCGGTGGTGGTGGTGGTCGCCGGCCACACC
GGCGGCGGAGGCACCACCAGACACGGCACCTGCAGCAGCAGCAGCAGCAG
CAGCGCAAGCACCGATACCTTCGCCGTGTCCACACGACTCGAGTCCGGCG
CTCCCGTGGCCCATGAAGGCTGCTGAGCCATCGAGGTTCGGG
back to top