mRNA_E-fasciculatus_F_contig13621.2688.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13621.2688.1
Unique NamemRNA_E-fasciculatus_F_contig13621.2688.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13621.2688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13621contigE-fasciculatus_F_contig13621:2790..3525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size736
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13621.2688.1prot_E-fasciculatus_F_contig13621.2688.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13621 2798..3337 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927859.4387698-UTR-E-fasciculatus_F_contig13621:2789..27971622927859.4387698-UTR-E-fasciculatus_F_contig13621:2789..2797Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13621 2790..2797 +
1695995726.669119-UTR-E-fasciculatus_F_contig13621:2789..27971695995726.669119-UTR-E-fasciculatus_F_contig13621:2789..2797Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13621 2790..2797 +
1622927859.4911447-UTR-E-fasciculatus_F_contig13621:3337..35251622927859.4911447-UTR-E-fasciculatus_F_contig13621:3337..3525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13621 3338..3525 +
1695995726.6913815-UTR-E-fasciculatus_F_contig13621:3337..35251695995726.6913815-UTR-E-fasciculatus_F_contig13621:3337..3525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13621 3338..3525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927859.4727519-CDS-E-fasciculatus_F_contig13621:2797..33371622927859.4727519-CDS-E-fasciculatus_F_contig13621:2797..3337Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13621 2798..3337 +
1695995726.6827204-CDS-E-fasciculatus_F_contig13621:2797..33371695995726.6827204-CDS-E-fasciculatus_F_contig13621:2797..3337Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13621 2798..3337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13621.2688.1

>prot_E-fasciculatus_F_contig13621.2688.1 ID=prot_E-fasciculatus_F_contig13621.2688.1|Name=mRNA_E-fasciculatus_F_contig13621.2688.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=180bp
MLVVAVKDMDSRTRLSRRTQFFGNHTTTTTTTTAISSAGRIYNKKNKERN
PQIVTRNSLKPSCIAETATTEWERYRASAATAVQLLKSHVVRGWCRDSRK
RPFLPVSGCNRRGWGVIYTPSVCVYLIQALFFLRTEKTKLYNLIDWRRAK
KPCCSRCVVSGRAFLILKMTGVQCFFRQY*
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mRNA from alignment at E-fasciculatus_F_contig13621:2790..3525+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13621.2688.1 ID=mRNA_E-fasciculatus_F_contig13621.2688.1|Name=mRNA_E-fasciculatus_F_contig13621.2688.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=736bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13621:2790..3525+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGATAGGATGTTGGTGGTAGCGGTGAAGGATATGGACAGTCGGACCCGA
TTGAGTCGGAGGACACAATTTTTTGGCAACCACACAACAACAACAACAAC
AACAACAGCTATCAGCAGTGCTGGCAGAATATACAACAAGAAAAACAAAG
AACGAAACCCCCAGATCGTGACGCGGAACAGTCTCAAGCCCAGCTGTATA
GCTGAGACGGCAACAACAGAGTGGGAACGATACAGAGCGAGTGCTGCAAC
AGCAGTACAGCTGTTGAAAAGTCACGTCGTTCGTGGGTGGTGCCGAGATT
CTAGAAAACGGCCCTTTCTGCCTGTGAGTGGGTGCAACCGACGTGGCTGG
GGAGTAATCTATACACCTTCCGTGTGTGTTTATTTGATCCAAGCATTATT
TTTTCTGCGAACAGAAAAAACAAAGCTGTACAATTTGATCGATTGGCGCA
GAGCAAAAAAACCCTGTTGTTCGCGGTGCGTTGTCTCCGGAAGAGCATTC
CTGATCTTGAAAATGACTGGAGTTCAGTGTTTCTTTCGACAATATTAACT
ACTCGACTTCAGTATTGATATGCAACTCCTGGACGAGTTTCGTCGGAGTT
GCGGGTCTGAAGCTTCCGTTGCTATTTTTGTGACGGCGAGACCCCAGCAA
ACTGATACAAAAAGTAAAAACGCGCGGAGAGACCGAGAGGGATTAAAGCG
CAAGCTACAACCAACGGACGAAATACTTGGGAGAGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13621:2790..3525+

>mRNA_E-fasciculatus_F_contig13621.2688.1 ID=mRNA_E-fasciculatus_F_contig13621.2688.1|Name=mRNA_E-fasciculatus_F_contig13621.2688.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1080bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13621:2790..3525+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGGTGGTAGCGGTGAAGGATATGGACAGTCGGACCCGATTGAGTCG
GAGGACACAATTTTTTGGCAACCACACAACAACAACAACAACAACAACAG
CTATCAGCAGTGCTGGCAGAATATACAACAAGAAAAACAAAGAACGAAAC
CCCCAGATCGTGACGCGGAACAGTCTCAAGCCCAGCTGTATAGCTGAGAC
GGCAACAACAGAGTGGGAACGATACAGAGCGAGTGCTGCAACAGCAGTAC
AGCTGTTGAAAAGTCACGTCGTTCGTGGGTGGTGCCGAGATTCTAGAAAA
CGGCCCTTTCTGCCTGTGAGTGGGTGCAACCGACGTGGCTGGGGAGTAAT
CTATACACCTTCCGTGTGTGTTTATTTGATCCAAGCATTATTTTTTCTGC
GAACAGAAAAAACAAAGCTGTACAATTTGATCGATTGGCGCAGAGCAAAA
AAACCCTGTTGTTCGCGGTGCGTTGTCTCCGGAAGAGCATTCCTGATCTT
GAAAATGACTGGAGTTCAGTGTTTCTTTCGACAATATTAAATGTTGGTGG
TAGCGGTGAAGGATATGGACAGTCGGACCCGATTGAGTCGGAGGACACAA
TTTTTTGGCAACCACACAACAACAACAACAACAACAACAGCTATCAGCAG
TGCTGGCAGAATATACAACAAGAAAAACAAAGAACGAAACCCCCAGATCG
TGACGCGGAACAGTCTCAAGCCCAGCTGTATAGCTGAGACGGCAACAACA
GAGTGGGAACGATACAGAGCGAGTGCTGCAACAGCAGTACAGCTGTTGAA
AAGTCACGTCGTTCGTGGGTGGTGCCGAGATTCTAGAAAACGGCCCTTTC
TGCCTGTGAGTGGGTGCAACCGACGTGGCTGGGGAGTAATCTATACACCT
TCCGTGTGTGTTTATTTGATCCAAGCATTATTTTTTCTGCGAACAGAAAA
AACAAAGCTGTACAATTTGATCGATTGGCGCAGAGCAAAAAAACCCTGTT
GTTCGCGGTGCGTTGTCTCCGGAAGAGCATTCCTGATCTTGAAAATGACT
GGAGTTCAGTGTTTCTTTCGACAATATTAA
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