mRNA_E-fasciculatus_F_contig13464.2593.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13464.2593.1
Unique NamemRNA_E-fasciculatus_F_contig13464.2593.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13464.2593.1 vs. uniprot
Match: D8LR20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR20_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 1.250e-60
Identity = 178/180 (98.89%), Postives = 179/180 (99.44%), Query Frame = 1 
Query:    1 KVQRFSPEELLALRRAPTRPLGKMPVLGGDISIIVSEEPLEPVTATPADQEAISRIWAAAAERQPMRGRRSRWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAADGTGGLHGVEGMDLLSMAQKADKFQEQMDSMKRRMEGVELHEQKEE 540
            KVQRFSPEELLALRRAPTRPLGKMPVLGGDISIIVSEEPLEPVTATPADQEAISRIWAAAAERQPMRGRRSRWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HAADG+GGLHGVEGMDLLSMAQKADKFQEQMDSMKRRMEGVELHEQKEE
Sbjct:  158 KVQRFSPEELLALRRAPTRPLGKMPVLGGDISIIVSEEPLEPVTATPADQEAISRIWAAAAERQPMRGRRSRWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HAADGSGGLHGVEGMDLLSMAQKADKFQEQMDSMKRRMEGVELHEQKEE 336
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BLAST of mRNA_E-fasciculatus_F_contig13464.2593.1 vs. uniprot
Match: A0A6H5KUY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY1_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.130e-24
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 KVQRFSPEELLALRRAPTRPLGKMPVLGGDISIIVSEEPLEPVTATPADQEAISRI 168
            KVQRFSPEELLALRRAPTRPLGKMPVLGGDISIIVSEEPLEPVTATPADQEAISR+
Sbjct:  197 KVQRFSPEELLALRRAPTRPLGKMPVLGGDISIIVSEEPLEPVTATPADQEAISRV 252
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13464.2593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LR20_ECTSI1.250e-6098.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUY1_9PHAE4.130e-2498.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13464contigE-fasciculatus_F_contig13464:21..3600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_004700.1
Exons5
Model size942
Cds size942
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13464.2593.1prot_E-fasciculatus_F_contig13464.2593.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13464 21..3600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927846.143229-CDS-E-fasciculatus_F_contig13464:20..4551622927846.143229-CDS-E-fasciculatus_F_contig13464:20..455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13464 21..455 -
1695995720.447252-CDS-E-fasciculatus_F_contig13464:20..4551695995720.447252-CDS-E-fasciculatus_F_contig13464:20..455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13464 21..455 -
1622927846.159041-CDS-E-fasciculatus_F_contig13464:978..10521622927846.159041-CDS-E-fasciculatus_F_contig13464:978..1052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13464 979..1052 -
1695995720.4559443-CDS-E-fasciculatus_F_contig13464:978..10521695995720.4559443-CDS-E-fasciculatus_F_contig13464:978..1052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13464 979..1052 -
1622927846.176221-CDS-E-fasciculatus_F_contig13464:1785..18801622927846.176221-CDS-E-fasciculatus_F_contig13464:1785..1880Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13464 1786..1880 -
1695995720.464745-CDS-E-fasciculatus_F_contig13464:1785..18801695995720.464745-CDS-E-fasciculatus_F_contig13464:1785..1880Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13464 1786..1880 -
1622927846.2018747-CDS-E-fasciculatus_F_contig13464:2502..26751622927846.2018747-CDS-E-fasciculatus_F_contig13464:2502..2675Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13464 2503..2675 -
1695995720.476949-CDS-E-fasciculatus_F_contig13464:2502..26751695995720.476949-CDS-E-fasciculatus_F_contig13464:2502..2675Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13464 2503..2675 -
1622927846.2229943-CDS-E-fasciculatus_F_contig13464:3435..36001622927846.2229943-CDS-E-fasciculatus_F_contig13464:3435..3600Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13464 3436..3600 -
1695995720.4867377-CDS-E-fasciculatus_F_contig13464:3435..36001695995720.4867377-CDS-E-fasciculatus_F_contig13464:3435..3600Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13464 3436..3600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13464.2593.1

>prot_E-fasciculatus_F_contig13464.2593.1 ID=prot_E-fasciculatus_F_contig13464.2593.1|Name=mRNA_E-fasciculatus_F_contig13464.2593.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=314bp
KVQRFSPEELLALRRAPTRPLGKMPVLGGDISIIVSEEPLEPVTATPADQ
EAISRIWAAAAERQPMRGRRSRWGGGDDGPGGGGGGAPPAPGHGAGGGGG
RWGGGGDRSHVHRRESEDDLWDDVGGGGGGGHAADGTGGLHGVEGMDLLS
MAQKADKFQEQMDSMKRRMEGVELHEQKEEARRKARDDDFQQRKRTASVS
SSSSTSQLQQQQQQQQQLQQQHAAEAQSASAASTTAAVPTSVSSSPSQLQ
QQLQQQQTAERSMAQQGGAGTFEGGSRIGSGSHGNMGAMEPSDAAPPAAA
AAAAAEVRVMTRK*
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mRNA from alignment at E-fasciculatus_F_contig13464:21..3600-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13464.2593.1 ID=mRNA_E-fasciculatus_F_contig13464.2593.1|Name=mRNA_E-fasciculatus_F_contig13464.2593.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3580bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13464:21..3600- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGTCCAGCGCTTCTCCCCCGAGGAACTGCTGGCCCTCAGGAGGGCCCC
CACGAGGCCGCTGGGCAAGATGCCCGTCCTGGGTGGCGACATCTCCATCA
TCGTGTCCGAGGAACCGCTAGAGCCGGTGACGGCCACTCCGGCCGATCAG
GAGGCCATCAGCAGGGTAAGAAGCAATGCCTCCCCTTTTTTTGAAGTGTT
CGTTTGTCAAGACCAGAATACAAGCGCGGGGATGCCTGGCAACAAAAGCG
GTTATGGTTAATTGTCAACGATTCGAACGATGTGTGGTTTTGTGAAGCTG
CATGTGTGCATTTCCTCAGCCACCATGGGCATCGTAACCGATTTTAGAAA
CACATGGCGAAGACGGATTTTTTCAGTTTTTTTCTTTTCGTAAAATGTAG
CTCTTGAATGTCAGTGCATCTAGATGCCGCTCAAGGAAAAACGTGTCAGG
TTTTGCCGGTGCGGTTGCAAAGAAGACGAAAACTTCAAATGCGGTTCCGA
GTGCGAAGACCGGGTTCATGTATTTTCTCAATGTCCGTTGTGCGAGAAGG
AGGGGGGAGGATAAGTGTACATGGCTAAGCTTGGTAAATGGAACGAATGC
ACAGGGAGATGTTTGAGGCATGGAATAGCCAGCAGAAGACGGTAGCTGCA
CTGGGACTTGGAAAGTGGGTAGAAAAGGCGGGGTTTGATATCGATAGGAT
AGATAGGTTAGGGAAAACATTTTTGAGGTACGTTTGGCAAAGTGGCAAGT
AACGACTGGCCATCAGTGATCGGTGCTGCGGGAACAATGCTCCCCTTCTC
TCGAGGACGCGTGGTTATTTGGTCTAACCGCTAGGGCATGCAAAACGCAA
GAGTATGCTCCCCCCTCCCCCAACTAGTTTGTGTCCATATTCTGAAAAAT
AACTACGACAAACTACCCCCGGCAGATTTGGGCCGCGGCGGCGGAACGTC
AACCGATGAGGGGCAGGCGTTCTCGGTGGGGGGGAGGGGATGACGGACCA
GGGGGCGGGGGCGGCGGAGCCCCCCCTGCCCCCGGACACGGAGCCGGCGG
GGGCGGGGGACGCTGGGGCGGAGGGGGCGATCGTTCCCACGTACACCGGT
GAGGATGAGGATGAAGGCTGTTGTGGTATTTTTTGGGTACAGTAGTTGTT
GCGACGGCGGGTATTGCAGGTGTCAAGCTGTGGCGCGGGCGTCAGCCCCA
ACGCCGTTGTTGCAATCCCTCCATCTTGAAGCAGGAAGGCAATCTTGGCA
TATCTCCTTTCCTGTGTTCGAATACGTAGCCCACGCTTGAACGCACGGTT
TGTTCTGGGTGTTGAGTGTCGTGTGTGTTTTTGTCTGGGTGTGTAGCGAC
CCAGATGCGGAGGGAGCCTCTTGCTGTTGCAGGCGCGCAAGCACAGAAGC
GAAAGGATGACGGCAGTGTAGTTGTGCGTAAACGGTTGGCGGAGAGAACT
TGCCACTCCTCTTGGCGCGTCTCAGAGTTAGTTTCCTCGCCGCAACGGTC
GGCACTACACAAGATCGCCTGCTTGTCCCCTCTGTGATCTATCTACCTGC
AAGGGTGTGGACTGAAGACGAAGGCGTTTTTTTTTTTTTTCGCTTGGCGA
CTAGTGCATCAAGTAGCGTACCGGTGCGGTGCTGTCGTACGTGTGTGTAT
ATACCGTACGCGTTAGCTTCGTGTTTTATTTATGGGTGCTGCTCTCTGTC
GTCGCGCTCTGCCACGCCAGGCGCGAGAGCGAGGATGACTTGTGGGACGA
TGTGGGCGGCGGCGGCGGCGGTGGACACGCCGCAGATGGAACCGGGGGTC
TCCACGGAGTCGAAGGTAAGAGTAGAGATGGAGGTAGGGGGGGTTGAGCG
GTGGTCGCCTGTGTTGTTATCCGTTATTGGTGTTGGCGTAGTTAAGGAGA
TGGTGCTATTGTACAGTTAAAACGTGGGAGTTAGGAGATTCAGGCTCAAC
AAAAGAAAAATCAAGCTCTTGGCCGTAAGAACAAAGTGTGCAGTCAACAA
TCTGCCCTGTATTCTATTAGTTGGCTGTTGGGGTTCCTTCCCCATAGAGC
GAAAATGAGAAACGAGTCCGGCCAAAATGAGCGCCTTTTGAGTGCTAGGG
CCAGCGGTAGTACTGTCTGGTGCGTTCGGCTTGCGTGCCAACATACGAAG
AGCTTGCTCGTGTACGTAAGTGACAAGTCTGTTCGTTGTCAGAGCTCGGA
AGGAGGCCCGCGCTATCCACACAAGGCAGATAATGCAACTGTCTCGACAC
CCACGACAACAGAGTATTTCTTGAGGAATCATCTTGACGGTGTTTCGATC
ACAGCTGCTGTATTCGTGCCCCCCCCCCCCCCCCTTCTTTCTGCGGGGGG
GGGGNNNNNNNNNNCCCCCCCTGTCTCTCGCGTAGGAGGGGTAGGGTTTG
TGTGCCATCTTCACGGGGAATGAGCGGTTCTTCATGGTGAGCGCTTAGGC
GTGAAATTTAACACATGCGTCCGTTTCCCACGCTCACGCCGTGTTTCTTC
ACATCGCTTTGCTACCTGCTGCCTCGTCTTCCTTCCTTCCTTCCTCAGGG
ATGGACCTTTTGTCGATGGCGCAGAAGGCGGACAAGTTCCAGGAGCAGAT
GGACAGCATGAAACGCCGCATGGTAAGGGAGCGAAGAGCTTTCGATTCGA
GAGCGGATGCATACAGAATCGCGGCTGGTTGTCGGTGTTTGTGTTTTGTG
TTGGTCCGAGCTTCCTGGCGTGTGATGCCGAATGTTGAGAATAATTGTTA
CACCGAAGTTGTGTGCTGTGCGATGCACGTACGTTCGCGATGTTGTCACC
ACGCGATGGATGCACTGGTCTGGTGTTGGTGGAAGACAAGATGTAGATGT
TCTCCCAAGTCGGGCAGTTGCCGCGCCTGTCGTGTGTTGTAGTGAAAAGT
GGTCGACAACTGGCGTTGTTTTGTTGTTGTTGTTGTCGACTACTAGAAAC
TGTTCCGATATCTCTGCACAGCAGTACCTTCATCGGTCCGTACTGATCGA
CCTACCACTTGACGCCGTCGATCCCCGTGGTGACGTATCTAATCTTTTGA
TACCCGTGATGAACATTCCCTCTCGCTTGATGTGCGGTGTCATGTGGTGT
CATCTCGCACCTGCCTTCCGTCTGTCTGACAACACACGCACGCAGGAGGG
TGTCGAGCTGCACGAGCAGAAAGAGGAGGCGAGGCGCAAGGCGAGGGACG
ACGACTTCCAGCAGCGCAAGAGGACCGCCTCCGTCTCCTCCTCCTCCTCC
ACGTCTCAACTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCAGCA
GCATGCGGCGGAAGCCCAGTCCGCGTCTGCGGCATCGACGACAGCAGCAG
TACCGACCTCGGTATCGTCATCCCCTTCTCAGCTACAGCAGCAGCTACAG
CAGCAGCAGACGGCGGAACGTTCTATGGCGCAACAGGGAGGGGCGGGGAC
GTTCGAGGGGGGTTCGCGGATTGGATCTGGATCGCATGGCAACATGGGGG
CGATGGAGCCCAGCGATGCCGCTCCCCCTGCTGCTGCTGCTGCTGCTGCT
GCGGAGGTGAGAGTGATGACGAGAAAATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13464:21..3600-

>mRNA_E-fasciculatus_F_contig13464.2593.1 ID=mRNA_E-fasciculatus_F_contig13464.2593.1|Name=mRNA_E-fasciculatus_F_contig13464.2593.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1884bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13464:21..3600- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGTCCAGCGCTTCTCCCCCGAGGAACTGCTGGCCCTCAGGAGGGCCCC
CACGAGGCCGCTGGGCAAGATGCCCGTCCTGGGTGGCGACATCTCCATCA
TCGTGTCCGAGGAACCGCTAGAGCCGGTGACGGCCACTCCGGCCGATCAG
GAGGCCATCAGCAGGAAGGTCCAGCGCTTCTCCCCCGAGGAACTGCTGGC
CCTCAGGAGGGCCCCCACGAGGCCGCTGGGCAAGATGCCCGTCCTGGGTG
GCGACATCTCCATCATCGTGTCCGAGGAACCGCTAGAGCCGGTGACGGCC
ACTCCGGCCGATCAGGAGGCCATCAGCAGGATTTGGGCCGCGGCGGCGGA
ACGTCAACCGATGAGGGGCAGGCGTTCTCGGTGGGGGGGAGGGGATGACG
GACCAGGGGGCGGGGGCGGCGGAGCCCCCCCTGCCCCCGGACACGGAGCC
GGCGGGGGCGGGGGACGCTGGGGCGGAGGGGGCGATCGTTCCCACGTACA
CCGATTTGGGCCGCGGCGGCGGAACGTCAACCGATGAGGGGCAGGCGTTC
TCGGTGGGGGGGAGGGGATGACGGACCAGGGGGCGGGGGCGGCGGAGCCC
CCCCTGCCCCCGGACACGGAGCCGGCGGGGGCGGGGGACGCTGGGGCGGA
GGGGGCGATCGTTCCCACGTACACCGGCGCGAGAGCGAGGATGACTTGTG
GGACGATGTGGGCGGCGGCGGCGGCGGTGGACACGCCGCAGATGGAACCG
GGGGTCTCCACGGAGTCGAAGGCGCGAGAGCGAGGATGACTTGTGGGACG
ATGTGGGCGGCGGCGGCGGCGGTGGACACGCCGCAGATGGAACCGGGGGT
CTCCACGGAGTCGAAGGGATGGACCTTTTGTCGATGGCGCAGAAGGCGGA
CAAGTTCCAGGAGCAGATGGACAGCATGAAACGCCGCATGGGATGGACCT
TTTGTCGATGGCGCAGAAGGCGGACAAGTTCCAGGAGCAGATGGACAGCA
TGAAACGCCGCATGGAGGGTGTCGAGCTGCACGAGCAGAAAGAGGAGGCG
AGGCGCAAGGCGAGGGACGACGACTTCCAGCAGCGCAAGAGGACCGCCTC
CGTCTCCTCCTCCTCCTCCACGTCTCAACTGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCTGCAGCAGCAGCATGCGGCGGAAGCCCAGTCCGCGTCTGCG
GCATCGACGACAGCAGCAGTACCGACCTCGGTATCGTCATCCCCTTCTCA
GCTACAGCAGCAGCTACAGCAGCAGCAGACGGCGGAACGTTCTATGGCGC
AACAGGGAGGGGCGGGGACGTTCGAGGGGGGTTCGCGGATTGGATCTGGA
TCGCATGGCAACATGGGGGCGATGGAGCCCAGCGATGCCGCTCCCCCTGC
TGCTGCTGCTGCTGCTGCTGCGGAGGTGAGAGTGATGACGAGAAAATGAG
AGGGTGTCGAGCTGCACGAGCAGAAAGAGGAGGCGAGGCGCAAGGCGAGG
GACGACGACTTCCAGCAGCGCAAGAGGACCGCCTCCGTCTCCTCCTCCTC
CTCCACGTCTCAACTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCAGC
AGCAGCATGCGGCGGAAGCCCAGTCCGCGTCTGCGGCATCGACGACAGCA
GCAGTACCGACCTCGGTATCGTCATCCCCTTCTCAGCTACAGCAGCAGCT
ACAGCAGCAGCAGACGGCGGAACGTTCTATGGCGCAACAGGGAGGGGCGG
GGACGTTCGAGGGGGGTTCGCGGATTGGATCTGGATCGCATGGCAACATG
GGGGCGATGGAGCCCAGCGATGCCGCTCCCCCTGCTGCTGCTGCTGCTGC
TGCTGCGGAGGTGAGAGTGATGACGAGAAAATGA
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