mRNA_E-fasciculatus_F_contig13440.2583.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13440.2583.1
Unique NamemRNA_E-fasciculatus_F_contig13440.2583.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13440.2583.1 vs. uniprot
Match: D7FMT0_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT0_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 3.610e-24
Identity = 91/157 (57.96%), Postives = 101/157 (64.33%), Query Frame = 2 
Query:  167 MDSSREEDEDDVLVVPTRSSRRTAGRGEGSAAVLPVPEXXXSPLAPAASQPKS-PNGSSVTVRPTRSNKRSASEASHGH-DVVVAESLAGLSFDHPQTNHAAGVDHEATAAGADAEEPPSQPPSXXXXXXSARARRGSQHQHGYPLVQEKAGLGGCE 631
            MDSSRE++EDDV VVP RSS RT  R +GSAAV P P    SPLAPA SQPKS PN     VRPTRSNKRSAS+A HGH D ++AES AG S DH +      +DH ATAAGA+AE    QP  XXXXXX               LVQE+AG G CE
Sbjct:    1 MDSSREDEEDDVPVVPPRSSGRTTVRADGSAAV-PFP----SPLAPAESQPKSRPN-----VRPTRSNKRSASDAGHGHGDAILAESPAGSSVDHAEE-----IDH-ATAAGANAE----QPXXXXXXXXXXXXXXXXXXXXXXLLVQERAGQGSCE 137
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13440.2583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMT0_ECTSI3.610e-2457.96ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13440contigE-fasciculatus_F_contig13440:848..2438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue2.5e-22
Seed eggNOG ortholog2880.D7FMT0
KEGG koko:K08596
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0779@2759
EC3.4.22.68
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size648
Cds size480
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13440.2583.1prot_E-fasciculatus_F_contig13440.2583.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13440 848..1327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927845.0201964-CDS-E-fasciculatus_F_contig13440:847..13271622927845.0201964-CDS-E-fasciculatus_F_contig13440:847..1327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13440 848..1327 -
1695995719.9236917-CDS-E-fasciculatus_F_contig13440:847..13271695995719.9236917-CDS-E-fasciculatus_F_contig13440:847..1327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13440 848..1327 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927845.0336604-UTR-E-fasciculatus_F_contig13440:1327..13401622927845.0336604-UTR-E-fasciculatus_F_contig13440:1327..1340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13440 1328..1340 -
1695995719.9367256-UTR-E-fasciculatus_F_contig13440:1327..13401695995719.9367256-UTR-E-fasciculatus_F_contig13440:1327..1340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13440 1328..1340 -
1622927845.0511131-UTR-E-fasciculatus_F_contig13440:2285..24381622927845.0511131-UTR-E-fasciculatus_F_contig13440:2285..2438Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13440 2286..2438 -
1695995719.945965-UTR-E-fasciculatus_F_contig13440:2285..24381695995719.945965-UTR-E-fasciculatus_F_contig13440:2285..2438Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13440 2286..2438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13440.2583.1

>prot_E-fasciculatus_F_contig13440.2583.1 ID=prot_E-fasciculatus_F_contig13440.2583.1|Name=mRNA_E-fasciculatus_F_contig13440.2583.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=160bp
MDSSREEDEDDVLVVPTRSSRRTAGRGEGSAAVLPVPEPVPSPLAPAASQ
PKSPNGSSVTVRPTRSNKRSASEASHGHDVVVAESLAGLSFDHPQTNHAA
GVDHEATAAGADAEEPPSQPPSPKRRRRSARARRGSQHQHGYPLVQEKAG
LGGCEQGEMV
back to top

mRNA from alignment at E-fasciculatus_F_contig13440:848..2438-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13440.2583.1 ID=mRNA_E-fasciculatus_F_contig13440.2583.1|Name=mRNA_E-fasciculatus_F_contig13440.2583.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1591bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13440:848..2438- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAGACAGAGGACTTACACTGCGTGTGGTGCGTTGTGGAGTGCCTGAGGA
TCGTAGGGAGACGGGTGAGTGTTTTCTCTAGGTCTGGGTACGTGCTGGAA
CCGTCGTCTTCTTCCTAGCAAGGCCGTGCTACAACGATTTCAACCATCCA
CAGGTGCGTGTTGCCTTTTTTCAAGCGGCAACATCAGACAGCTACAATCG
CCCGCGCCCGCCCAGCAGCCTCCTGCTTGCGGCCCTATCCTGTCGTGAAG
TAGTAACCCATGACAGAGGTCCTAGTTTAGCGGGTCCCTGTGCAGCGAGA
TTCCCTGCAGCGGTTTCATAGTCTCGGAGTACCGCTGCACCCCTTTGTAG
GGCACCAATCGTGCACCCAATAGCGGCTATCCGAGCTCTCTCTCTCCCTC
TCTTCAGCGAAAAATTTAATTTTGAAGCGATTCAAATTTTTTCGCACAGC
TGTCTCATATTTTGCCACCAACAGCTTTCTGGCCTACAGGATGCATACCT
TGTACTACCGATGCTGCTGTAGCAACCCTAGCCTAACAGCGTAGACCATG
CTTCGGCTGCGTAGCGCACTACATTATATGCATATATATCCGCCTTGGAC
GAAGGGATTGTTCCTCATGCATAGCGCACGCGGCTATCGGAGAACACAGA
GCCGCTAGGAGGCAGTCAGTCTACTCCTAGCAGTCGAGTCTGACTGCTGA
AGTAACCTCTGCTGCACCCTGTGCATACCACAACATGTATATTGTAACAG
CAGTACGCAACCCGAAGCTATGCATACGTAGATAGAGTAGTCTAGAGATG
ATATCTACGTACAATATTCCCGAATATTCCCGTATTGCTTGCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCGTACAACAGCTCCCCTCAGTGGTTCCCA
GCTCCAAAGCTTCATGTCTAGACTATTGCTTGTAAATGTTAGAGTACGTA
ATGACAGATTTCTTCCTTACAGCTGTAAATAGTACAGCAGAATTTGCGGT
GTCTTCAACCCGAAATAACGGCGGTTGGTTCACACCCCATAGCTGACTGA
CTGACTGCACCCGCCTGCCTGCCCCGTGACTTGTAACTGTAACAACAGGC
GTAGTTAAACGATGGACAGCAGCCGCGAGGAGGATGAAGATGACGTGCTT
GTGGTGCCCACGAGGTCCTCCAGGCGCACCGCAGGAAGGGGGGAGGGCTC
CGCGGCCGTTCTTCCGGTTCCAGAACCGGTTCCATCGCCTCTTGCGCCCG
CAGCAAGCCAACCAAAATCACCCAACGGCAGCAGCGTAACCGTCAGGCCG
ACCCGAAGCAATAAGCGTTCGGCAAGCGAAGCGAGCCACGGCCACGACGT
TGTCGTTGCCGAGTCCCTCGCAGGGTTATCGTTCGACCATCCCCAAACCA
ACCATGCCGCGGGGGTGGATCACGAAGCAACCGCTGCCGGCGCAGATGCC
GAAGAACCTCCATCGCAACCGCCGTCCCCGAAACGGCGACGCAGATCAGC
GAGAGCCAGGAGGGGAAGCCAACACCAACATGGTTACCCGCTGGTCCAGG
AGAAGGCTGGCCTGGGAGGCTGCGAGCAGGGAGAGATGGTT
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13440:848..2438-

>mRNA_E-fasciculatus_F_contig13440.2583.1 ID=mRNA_E-fasciculatus_F_contig13440.2583.1|Name=mRNA_E-fasciculatus_F_contig13440.2583.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=960bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13440:848..2438- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACAGCAGCCGCGAGGAGGATGAAGATGACGTGCTTGTGGTGCCCAC
GAGGTCCTCCAGGCGCACCGCAGGAAGGGGGGAGGGCTCCGCGGCCGTTC
TTCCGGTTCCAGAACCGGTTCCATCGCCTCTTGCGCCCGCAGCAAGCCAA
CCAAAATCACCCAACGGCAGCAGCGTAACCGTCAGGCCGACCCGAAGCAA
TAAGCGTTCGGCAAGCGAAGCGAGCCACGGCCACGACGTTGTCGTTGCCG
AGTCCCTCGCAGGGTTATCGTTCGACCATCCCCAAACCAACCATGCCGCG
GGGGTGGATCACGAAGCAACCGCTGCCGGCGCAGATGCCGAAGAACCTCC
ATCGCAACCGCCGTCCCCGAAACGGCGACGCAGATCAGCGAGAGCCAGGA
GGGGAAGCCAACACCAACATGGTTACCCGCTGGTCCAGGAGAAGGCTGGC
CTGGGAGGCTGCGAGCAGGGAGAGATGGTTATGGACAGCAGCCGCGAGGA
GGATGAAGATGACGTGCTTGTGGTGCCCACGAGGTCCTCCAGGCGCACCG
CAGGAAGGGGGGAGGGCTCCGCGGCCGTTCTTCCGGTTCCAGAACCGGTT
CCATCGCCTCTTGCGCCCGCAGCAAGCCAACCAAAATCACCCAACGGCAG
CAGCGTAACCGTCAGGCCGACCCGAAGCAATAAGCGTTCGGCAAGCGAAG
CGAGCCACGGCCACGACGTTGTCGTTGCCGAGTCCCTCGCAGGGTTATCG
TTCGACCATCCCCAAACCAACCATGCCGCGGGGGTGGATCACGAAGCAAC
CGCTGCCGGCGCAGATGCCGAAGAACCTCCATCGCAACCGCCGTCCCCGA
AACGGCGACGCAGATCAGCGAGAGCCAGGAGGGGAAGCCAACACCAACAT
GGTTACCCGCTGGTCCAGGAGAAGGCTGGCCTGGGAGGCTGCGAGCAGGG
AGAGATGGTT
back to top