mRNA_E-fasciculatus_F_contig1344.2581.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1344.2581.1
Unique NamemRNA_E-fasciculatus_F_contig1344.2581.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1344.2581.1 vs. uniprot
Match: D7FW96_ECTSI (Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW96_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 1.960e-59
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 1 
Query:    1 LRERFCRPPIVAAAAGGHASMVRLLLDRGADPAVEDGNGETAADVAKRSAFVDVQGELARKEAGYFGVAAGQRGAANPLVPCCWGCGKLVETGHRKIEHEQECA 312
            LRERFCRPP+VAAAA GHASMVRLLLDRGADPAV DGNG+TAADVAKR AFVDVQGELARK+AGYFGVAAGQRGAANPLVPCCWGCGKLVETGHRKIEHEQECA
Sbjct: 1549 LRERFCRPPLVAAAAAGHASMVRLLLDRGADPAVADGNGDTAADVAKRRAFVDVQGELARKDAGYFGVAAGQRGAANPLVPCCWGCGKLVETGHRKIEHEQECA 1652
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BLAST of mRNA_E-fasciculatus_F_contig1344.2581.1 vs. uniprot
Match: A0A6H5L3D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3D7_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.020e-23
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:  172 LARKEAGYFGVAAGQRGAANPLVPCCWGCGKLVETGHRKIEHEQECA 312
            + +KEAGYFGVAAGQRGAANPLVPCCWGCGKLVETGHRKIEHEQ+CA
Sbjct:    1 MQQKEAGYFGVAAGQRGAANPLVPCCWGCGKLVETGHRKIEHEQQCA 47
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1344.2581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW96_ECTSI1.960e-5994.23Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ect... [more]
A0A6H5L3D7_9PHAE3.020e-2391.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1344contigE-fasciculatus_F_contig1344:3977..4640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.5
Seed ortholog evalue6.2e-51
Seed eggNOG ortholog2880.D7FW96
KEGG koko:K08873
KEGG Pathwayko03015,map03015
EggNOG free text desc.TNF receptor-associated factor
EggNOG OGsCOG0666@1,KOG0297@1,KOG0297@2759,KOG4177@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927844.7380645-CDS-E-fasciculatus_F_contig1344:3976..41561622927844.7380645-CDS-E-fasciculatus_F_contig1344:3976..4156Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1344 3977..4156 +
1695995719.786724-CDS-E-fasciculatus_F_contig1344:3976..41561695995719.786724-CDS-E-fasciculatus_F_contig1344:3976..4156Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1344 3977..4156 +
1622927844.7519107-CDS-E-fasciculatus_F_contig1344:4506..46381622927844.7519107-CDS-E-fasciculatus_F_contig1344:4506..4638Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1344 4507..4638 +
1695995719.7991614-CDS-E-fasciculatus_F_contig1344:4506..46381695995719.7991614-CDS-E-fasciculatus_F_contig1344:4506..4638Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1344 4507..4638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1344.2581.1prot_E-fasciculatus_F_contig1344.2581.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1344 3977..4638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1344.2581.1

>prot_E-fasciculatus_F_contig1344.2581.1 ID=prot_E-fasciculatus_F_contig1344.2581.1|Name=mRNA_E-fasciculatus_F_contig1344.2581.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
LRERFCRPPIVAAAAGGHASMVRLLLDRGADPAVEDGNGETAADVAKRSA
FVDVQGELARKEAGYFGVAAGQRGAANPLVPCCWGCGKLVETGHRKIEHE
QECA
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mRNA from alignment at E-fasciculatus_F_contig1344:3977..4640+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1344.2581.1 ID=mRNA_E-fasciculatus_F_contig1344.2581.1|Name=mRNA_E-fasciculatus_F_contig1344.2581.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=664bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1344:3977..4640+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCGAGAACGATTCTGCCGGCCGCCTATCGTGGCCGCCGCAGCGGGGGG
GCACGCTTCGATGGTGAGGCTCCTGCTCGACCGCGGGGCCGATCCGGCGG
TGGAGGACGGGAACGGCGAGACGGCAGCGGATGTAGCCAAGAGGAGCGCG
TTTGTTGACGTGCAGGGAGAGCTCGCTCGGGTAAGGAGATGCAGAGATAA
TAGCGTTTGAGAGAGGGGGGAATAGTGACCGTGTACGGGGAAGGAGGAGG
CGAGGGGGGGTAGACGGATAGAAGAGTGAGTTGCAGCATCGTGAAGGAAA
TGGTAGGTTTGAGGATTGTTGTATGATACAAAGATGTCAACGTGAGTGGT
AAGCACTTATCAGATCACACTTCCTTGTCTTCCTTTGCTTGTTGGCCAAG
TCGGTGGATACTAATGATTCCAAAGAACTACGCAAGAGGCTATACCTCCA
CGGAGTCTTGCCTGTTTCCCCCGCGCACTCTCGTTTCACCAACACACCAT
TTGGGTCTACCTATCGTGTGGACGCAACAGAAAGAGGCGGGGTACTTCGG
AGTCGCGGCAGGGCAGCGCGGGGCGGCCAATCCCCTCGTTCCGTGCTGCT
GGGGGTGCGGCAAGCTGGTGGAGACGGGCCACCGCAAGATCGAACACGAG
CAAGAATGTGCCCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1344:3977..4640+

>mRNA_E-fasciculatus_F_contig1344.2581.1 ID=mRNA_E-fasciculatus_F_contig1344.2581.1|Name=mRNA_E-fasciculatus_F_contig1344.2581.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1344:3977..4640+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCGAGAACGATTCTGCCGGCCGCCTATCGTGGCCGCCGCAGCGGGGGG
GCACGCTTCGATGGTGAGGCTCCTGCTCGACCGCGGGGCCGATCCGGCGG
TGGAGGACGGGAACGGCGAGACGGCAGCGGATGTAGCCAAGAGGAGCGCG
TTTGTTGACGTGCAGGGAGAGCTCGCTCGGCTGCGAGAACGATTCTGCCG
GCCGCCTATCGTGGCCGCCGCAGCGGGGGGGCACGCTTCGATGGTGAGGC
TCCTGCTCGACCGCGGGGCCGATCCGGCGGTGGAGGACGGGAACGGCGAG
ACGGCAGCGGATGTAGCCAAGAGGAGCGCGTTTGTTGACGTGCAGGGAGA
GCTCGCTCGGAAAGAGGCGGGGTACTTCGGAGTCGCGGCAGGGCAGCGCG
GGGCGGCCAATCCCCTCGTTCCGTGCTGCTGGGGGTGCGGCAAGCTGGTG
GAGACGGGCCACCGCAAGATCGAACACGAGCAAGAATGTGCCAAAGAGGC
GGGGTACTTCGGAGTCGCGGCAGGGCAGCGCGGGGCGGCCAATCCCCTCG
TTCCGTGCTGCTGGGGGTGCGGCAAGCTGGTGGAGACGGGCCACCGCAAG
ATCGAACACGAGCAAGAATGTGCC
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