mRNA_E-fasciculatus_F_contig1343.2573.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1343.2573.1
Unique NamemRNA_E-fasciculatus_F_contig1343.2573.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1343.2573.1 vs. uniprot
Match: D7FLM2_ECTSI (Tetratricopeptide repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM2_ECTSI)

HSP 1 Score: 422 bits (1086), Expect = 8.020e-133
Identity = 215/249 (86.35%), Postives = 218/249 (87.55%), Query Frame = 1 
Query:    1 MLPALDRPRGEGGAGGPLVPLPLEKPKFHHGEARPKRPKKEKPPKRVKRGERQSIGDEDFGQSTLLDDELRGHVNARTIAAASMEMARSKPQQXXXXXXXXXXGFQDGDEDSRLCQELLSKAPHGHNDASKYWSRSLRLYAAQSHPEEFALIQLKLAQTFYATAMLGTVVKDVLKSLESCLHHYNICLQLYNPSRYPRRWGLAALEMGMALGAMADLVEREIPRVKPDGEAGKDAVAGFYTEVAVMTNK 747
            MLPALDRPRG+GG GGPLVPLPLEKPKFHHGEARPKR            GERQSIGDEDFGQSTLLDDELRGHVNARTIAAAS+EMARSKPQQ          G QDGDEDSRLCQELLSKAPHGHNDA KYWSRSLRLY AQSHPEEFALIQLKLAQTFY TAMLGTVVKDVLKSLESCLHHYNICLQLYNPSRYPRRWGLAALEMGMALGAMADLVEREI RVKPD EAG DAVAGFY EVAV+TNK
Sbjct:    1 MLPALDRPRGDGGPGGPLVPLPLEKPKFHHGEARPKRXXXXXXXXXXXXGERQSIGDEDFGQSTLLDDELRGHVNARTIAAASVEMARSKPQQQHRQQRNNDGGTQDGDEDSRLCQELLSKAPHGHNDAFKYWSRSLRLYVAQSHPEEFALIQLKLAQTFYTTAMLGTVVKDVLKSLESCLHHYNICLQLYNPSRYPRRWGLAALEMGMALGAMADLVEREIQRVKPDAEAGTDAVAGFYKEVAVLTNK 249
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1343.2573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLM2_ECTSI8.020e-13386.35Tetratricopeptide repeat domain protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1343contigE-fasciculatus_F_contig1343:8382..11423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size780
Cds size780
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1343.2573.1prot_E-fasciculatus_F_contig1343.2573.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1343 8382..11423 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927843.9670632-CDS-E-fasciculatus_F_contig1343:8381..85011622927843.9670632-CDS-E-fasciculatus_F_contig1343:8381..8501Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 8382..8501 -
1695995719.3699586-CDS-E-fasciculatus_F_contig1343:8381..85011695995719.3699586-CDS-E-fasciculatus_F_contig1343:8381..8501Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 8382..8501 -
1622927843.981129-CDS-E-fasciculatus_F_contig1343:8717..88611622927843.981129-CDS-E-fasciculatus_F_contig1343:8717..8861Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 8718..8861 -
1695995719.3784635-CDS-E-fasciculatus_F_contig1343:8717..88611695995719.3784635-CDS-E-fasciculatus_F_contig1343:8717..8861Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 8718..8861 -
1622927843.9970083-CDS-E-fasciculatus_F_contig1343:9413..94761622927843.9970083-CDS-E-fasciculatus_F_contig1343:9413..9476Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 9414..9476 -
1695995719.3879862-CDS-E-fasciculatus_F_contig1343:9413..94761695995719.3879862-CDS-E-fasciculatus_F_contig1343:9413..9476Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 9414..9476 -
1622927844.00994-CDS-E-fasciculatus_F_contig1343:9951..101051622927844.00994-CDS-E-fasciculatus_F_contig1343:9951..10105Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 9952..10105 -
1695995719.3964436-CDS-E-fasciculatus_F_contig1343:9951..101051695995719.3964436-CDS-E-fasciculatus_F_contig1343:9951..10105Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 9952..10105 -
1622927844.026641-CDS-E-fasciculatus_F_contig1343:10469..106511622927844.026641-CDS-E-fasciculatus_F_contig1343:10469..10651Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 10470..10651 -
1695995719.404991-CDS-E-fasciculatus_F_contig1343:10469..106511695995719.404991-CDS-E-fasciculatus_F_contig1343:10469..10651Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 10470..10651 -
1622927844.046365-CDS-E-fasciculatus_F_contig1343:11306..114231622927844.046365-CDS-E-fasciculatus_F_contig1343:11306..11423Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 11307..11423 -
1695995719.4147038-CDS-E-fasciculatus_F_contig1343:11306..114231695995719.4147038-CDS-E-fasciculatus_F_contig1343:11306..11423Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1343 11307..11423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1343.2573.1

>prot_E-fasciculatus_F_contig1343.2573.1 ID=prot_E-fasciculatus_F_contig1343.2573.1|Name=mRNA_E-fasciculatus_F_contig1343.2573.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=260bp
MLPALDRPRGEGGAGGPLVPLPLEKPKFHHGEARPKRPKKEKPPKRVKRG
ERQSIGDEDFGQSTLLDDELRGHVNARTIAAASMEMARSKPQQQNRQQRN
NGGGFQDGDEDSRLCQELLSKAPHGHNDASKYWSRSLRLYAAQSHPEEFA
LIQLKLAQTFYATAMLGTVVKDVLKSLESCLHHYNICLQLYNPSRYPRRW
GLAALEMGMALGAMADLVEREIPRVKPDGEAGKDAVAGFYTEVAVMTNKA
GGYGGSGGH*
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mRNA from alignment at E-fasciculatus_F_contig1343:8382..11423-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1343.2573.1 ID=mRNA_E-fasciculatus_F_contig1343.2573.1|Name=mRNA_E-fasciculatus_F_contig1343.2573.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3042bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1343:8382..11423- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCCGGCGCTAGACAGACCACGGGGGGAGGGGGGTGCTGGCGGCCC
CTTAGTGCCGTTGCCGTTGGAGAAGCCGAAATTTCACCACGGCGAAGCTC
GCCCGAAGCGGCCGAAGGTATGATGAGAGGCGACGTGTTGCGTCCTACAA
CTGTTGTTATTTACTGTCGTGCTGGATACAATGATACCAGGATGAAATGA
TATCAGTGAACAACAGGTAAAGTGTTGAAAACAGTCTGTGCGTTTGACTA
CTACTGTACAAGACTGCCTTCCGCTCGAAATAACGCCGTCTTGGAAATGG
CGGCAAGCGGAGAGAAGTTGTTCACGTCAAGATGATGCTCAGTATTCCTC
GCCAACATTTTCCCCATAGTTCACCGTTGGGCAAATATGCTAGGCTTAGG
CCAAAGTCGCACTACTCGCAGTGAATCTGTAGGTGAGATTCGCCTGGAGC
CGATTTAGAAATTTGTTCGATCGAAGAAAGCACCATGAGCACCGACATCG
ACCGGTAGAACGAGGGCTGCTTGGATTGTTCCATTCACTGAGACACAATG
CATTGCTGCCGATAGAGCCAGCGTGCAGTCGCAAGTATGCTCGATTGCAC
GACCGGTCCAGTACTCTTAACACTGTCATGTGAAGTCGTTATCTGTAATC
TGCAGTGGCAAACCCGCGGAAGTAGTCCGCCATATTAGCTTCCTTTATGA
AGTAGTCCGCCATTGTTGGGGGTTCTTCTCTTCCTCTCCCTCATTCGAGC
ATGATCCCGAATCAACCCTCAGAAAGAAAAGCCACCTAAACGAGTCAAGC
GCGGAGAGCGTCAGTCTATAGGCGATGAAGATTTCGGCCAGAGCACGTTG
CTAGACGATGAGCTTAGAGGACATGTCAACGCCCGGACAATCGCGGCGGC
GAGCATGGAGATGGCCCGATCGAAACCGCAGCAGCAGAACCGCCAGCAGC
GCAAGTAAGCTTGGGACCTGCCCGCACGTTTCGAATTGCATACGCGGGGC
AGCGAGCCCACATTTGAGTGAGATTGTTCGTGCAGCACGTTTGAGAGATA
CATGGGAACTCGCTAACATTGGGTCGGCACACAGCGAAAGCATGCGTTGA
TTTCCCCTTTCGGCTCTACGACGAGCAGTCAAATGTGGACGAGAGAGCGC
TACCCACAGGGGCTGGCGACGAGACATCGGCTCTGCTACTTCCTGCCTTC
TGACCATGCGATCATTGGTCATTTTGACGAATGCCACAGGCAGGCAATTT
TGTGAAAGCGAGGGGGTTTATGCAACTCTAGTCTTCACGACCAACTTGTT
TTTGGTTGATCCTTTCAGCAATGGCGGTGGCTTCCAGGACGGGGATGAGG
ATTCGAGGCTGTGCCAAGAGCTCCTCTCCAAAGCCCCCCACGGCCATAAC
GATGCCTCCAAGTATTGGTCCCGCTCTCTCAGGCTCTACGCGGCGCAGTC
CCACCCCGAGGAATTCGCTCTGGTAAGCAATGACACGATCGACATTGATA
TTCTTGAAGCTGATGTCGTTGTCCGTACTGCCTCGGTCGAATCTGTGTCA
AACCTCGCCCGTAGTTCGTAGGCCGCGTAGTGACTACTCGACACCGGATG
TCATCCGAGATAGTGATAAGGGTGGAGCTCCAACTATCGGCATTGTCTTT
GTGTATCAACCGGAGCACTACATGAAGGGGTTGTCCATAGCTTTTACCAC
CCCCCGGTGTGCGGCAGTGGGGTCGCCGCTCTGCGGACTTTAGTTTAGCT
TCGTTCAGAGCCATCGCATTTTTGCATCGAAATCGTGTACTATAAGAGGT
ATTTTGTCGAGAACTGCGCCAATGCACGTAGGAGCGCAAGCGGTGAGGCA
AGCGGTGAGGCAAGCGGTGAGGCATCATTGCCTTGTGGCATGTATCAAGC
AAAGTCCCTGCCCTCCTTGCGTGCGCGTGCCCTCTTCCCGACGACAGATT
CAACTAAAGCTGGCTCAAACCTTCTACGCAACGGCCATGCTGGGCACCGT
AGTCAAGGATGTGAGTGTTCGCCGGAGTATTTGTTTTCGCAAGGTCTGTC
CCGGCGGTCCCATGGGACGTCCCATGGGACGTCCCACGCATCTCGTGGGC
GTCATTTGAGACGTCTAATGGGGAACGCTAAATTGTGAGGGCTAGTTTTT
TTTTTATCACCGTCACCCAGGATGATAACGTGTCATGGGCTTGCTTCTCT
CTTGAGGAAAAGCGCTTTCCGAAGGAAGCGGATTGATCGCATCTGGCTGC
TATGTTTCGATGTTCTAATTTGAATGACAGTGTAGTTGGAATATCTGGAC
CCTTTCGTAGAATATGAATGCGAACTTGGGCTTATCGGCAGAGGCTGGGT
GCGATGGTAATTCAGCCTTCCCACTGACCTAAAACACTACCACACGAACA
CGTTAAACAACGCGTGAGCTAACGCGTACTCTTGGTTCCTTCTTGGGCTG
AGAGTTGTTTCGTGTACAAGAAAATGCTATCACATTCCGTACGCGCACTC
TTCTTCCTCTCGAGCGCTGGCGGGGTCAACAACGTTCACGATCGCGCCTC
GTCGCCATACAGGTGCTGAAGAGCCTCGAAAGCTGCCTTCACCACTACAA
CATCTGCTTGCAGCTGTACAACCCTTCCCGGTACCCCCGTCGATGGGGCT
TAGCCGCCCTCGAGATGGGGATGGCCTTGGGAGCCATGGCGGATCTCGTT
GAGCGGGTGAGGGCGCACCCGAGAAATGTTCGCCCACCACTACGGCAATC
TCTGTCTCCCGTGCGCCAGTAGTAGTATATTTTTGGCGGGACCGGCGAAC
CCCCCTGGGATGATTGATGTTAACATTTGAACGATCTCGGTTGGCCATCA
CCAGATACGTTACATGAACCATCCGGGGTTTCAATTTTCCACCATTGGTT
GATTTTGGCGTGAGATTCGCAGGAAATCCCGCGGGTTAAGCCAGACGGCG
AGGCTGGAAAGGATGCCGTCGCGGGTTTCTACACGGAAGTCGCCGTTATG
ACCAACAAGGCAGGTGGTTACGGTGGTTCCGGGGGGCATTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1343:8382..11423-

>mRNA_E-fasciculatus_F_contig1343.2573.1 ID=mRNA_E-fasciculatus_F_contig1343.2573.1|Name=mRNA_E-fasciculatus_F_contig1343.2573.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1560bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1343:8382..11423- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCCGGCGCTAGACAGACCACGGGGGGAGGGGGGTGCTGGCGGCCC
CTTAGTGCCGTTGCCGTTGGAGAAGCCGAAATTTCACCACGGCGAAGCTC
GCCCGAAGCGGCCGAAGATGCTGCCGGCGCTAGACAGACCACGGGGGGAG
GGGGGTGCTGGCGGCCCCTTAGTGCCGTTGCCGTTGGAGAAGCCGAAATT
TCACCACGGCGAAGCTCGCCCGAAGCGGCCGAAGAAAGAAAAGCCACCTA
AACGAGTCAAGCGCGGAGAGCGTCAGTCTATAGGCGATGAAGATTTCGGC
CAGAGCACGTTGCTAGACGATGAGCTTAGAGGACATGTCAACGCCCGGAC
AATCGCGGCGGCGAGCATGGAGATGGCCCGATCGAAACCGCAGCAGCAGA
ACCGCCAGCAGCGCAAAAAGAAAAGCCACCTAAACGAGTCAAGCGCGGAG
AGCGTCAGTCTATAGGCGATGAAGATTTCGGCCAGAGCACGTTGCTAGAC
GATGAGCTTAGAGGACATGTCAACGCCCGGACAATCGCGGCGGCGAGCAT
GGAGATGGCCCGATCGAAACCGCAGCAGCAGAACCGCCAGCAGCGCAACA
ATGGCGGTGGCTTCCAGGACGGGGATGAGGATTCGAGGCTGTGCCAAGAG
CTCCTCTCCAAAGCCCCCCACGGCCATAACGATGCCTCCAAGTATTGGTC
CCGCTCTCTCAGGCTCTACGCGGCGCAGTCCCACCCCGAGGAATTCGCTC
TGCAATGGCGGTGGCTTCCAGGACGGGGATGAGGATTCGAGGCTGTGCCA
AGAGCTCCTCTCCAAAGCCCCCCACGGCCATAACGATGCCTCCAAGTATT
GGTCCCGCTCTCTCAGGCTCTACGCGGCGCAGTCCCACCCCGAGGAATTC
GCTCTGATTCAACTAAAGCTGGCTCAAACCTTCTACGCAACGGCCATGCT
GGGCACCGTAGTCAAGGATATTCAACTAAAGCTGGCTCAAACCTTCTACG
CAACGGCCATGCTGGGCACCGTAGTCAAGGATGTGCTGAAGAGCCTCGAA
AGCTGCCTTCACCACTACAACATCTGCTTGCAGCTGTACAACCCTTCCCG
GTACCCCCGTCGATGGGGCTTAGCCGCCCTCGAGATGGGGATGGCCTTGG
GAGCCATGGCGGATCTCGTTGAGCGGGTGCTGAAGAGCCTCGAAAGCTGC
CTTCACCACTACAACATCTGCTTGCAGCTGTACAACCCTTCCCGGTACCC
CCGTCGATGGGGCTTAGCCGCCCTCGAGATGGGGATGGCCTTGGGAGCCA
TGGCGGATCTCGTTGAGCGGGAAATCCCGCGGGTTAAGCCAGACGGCGAG
GCTGGAAAGGATGCCGTCGCGGGTTTCTACACGGAAGTCGCCGTTATGAC
CAACAAGGCAGGTGGTTACGGTGGTTCCGGGGGGCATTAAGAAATCCCGC
GGGTTAAGCCAGACGGCGAGGCTGGAAAGGATGCCGTCGCGGGTTTCTAC
ACGGAAGTCGCCGTTATGACCAACAAGGCAGGTGGTTACGGTGGTTCCGG
GGGGCATTAA
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