mRNA_E-fasciculatus_F_contig13364.2521.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13364.2521.1 vs. uniprot
Match: A0A6H5KXM6_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM6_9PHAE) HSP 1 Score: 306 bits (785), Expect = 8.080e-95 Identity = 175/263 (66.54%), Postives = 181/263 (68.82%), Query Frame = 1
Query: 1 IFTHLFSAPLIERKMAAGGSGCVLVEKVDKLSYEGERDTLHRTLDNAGKQVRFLSEAANTKSFARA-------------------------------------------------ASPERECRIVHFTGHGVPGQLTFEDDSGQLQYVDEAELLSMLLRGRKESGGGGVGLGGGSRKHL--PAHAXXXXXXXPAAGGYAGGLGFEGGIGYAPFVDVSESVEPAARLGEGGSSGVRDGAPRTGLQLVFLSSCHSQSVAKCFIEA 636
IFTHLFSAPL+E+KMA GGSG VLVEKVDKLSYE ERDTLHRTLDNA K+VRFLSEAANT+SFARA A ERECRIVHFTGHGVPG+LTFEDDSGQLQYV EAELLSMLLRGRKESGGG G GSRKHL PAHA P G YAG LGFEGGIGYAPFVDVSESVEP ARLG G +GAPRTGLQLVFLSSCHSQSVAKCFIEA
Sbjct: 50 IFTHLFSAPLVEQKMAPGGSGSVLVEKVDKLSYEEERDTLHRTLDNADKRVRFLSEAANTRSFARAVGCRVPPSPPRASRPGSVGSSLSAGSMXXXXXXXXXXXXXXXXXGDASAAEGERECRIVHFTGHGVPGELTFEDDSGQLQYVGEAELLSMLLRGRKESGGGS-GXXXGSRKHLGMPAHAAAAPAAAPVPGCYAGELGFEGGIGYAPFVDVSESVEPEARLGGG------EGAPRTGLQLVFLSSCHSQSVAKCFIEA 305
BLAST of mRNA_E-fasciculatus_F_contig13364.2521.1 vs. uniprot
Match: D8LEZ2_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ2_ECTSI) HSP 1 Score: 137 bits (345), Expect = 8.730e-34 Identity = 80/108 (74.07%), Postives = 81/108 (75.00%), Query Frame = 1
Query: 319 MLLRGRKESGGGGVGLGGGSRKHL--PAHAXXXXXXXPAAGGYAGGLGFEGGIGYAPFVDVSESVEPAARLGEGGSSGVRDGAPRTGLQLVFLSSCHSQSVAKCFIEA 636
MLLRGRKESGG G S KHL PA A PAAGGYAGGLGFEGGIGYAPFVDVSESVEP ARLG +GAPRTGLQLVFLSSCHSQSVAKCFIEA
Sbjct: 1 MLLRGRKESGGXXXXXGSRS-KHLGMPALAMAAPAAAPAAGGYAGGLGFEGGIGYAPFVDVSESVEPEARLGGA------EGAPRTGLQLVFLSSCHSQSVAKCFIEA 101
BLAST of mRNA_E-fasciculatus_F_contig13364.2521.1 vs. uniprot
Match: A0A7S2USZ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USZ5_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 8.690e-18 Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 1 IFTHLFSAPLIERKMAAGGSGCVLVEKVDKLSYEGERDTLHRTLDNAGKQVRFLSEAANTKSFARAASPERECRIVHFTGHGVPGQLTFEDDSGQLQYVDEAELLSML 324
+F HL SAPL+ G L D+L+Y+GERD L R + + K++RF SE SF R +S ECR++H+TGHGV G +TFE+ G LQ+V +L ++
Sbjct: 37 LFAHLISAPLVMEDEENGFEPMAL----DELNYKGERDLLLRVMQDPRKKLRFRSEIVTADSFVRNSS---ECRVLHYTGHGVRGHVTFENGHGALQFVYRDKLQDLV 137
BLAST of mRNA_E-fasciculatus_F_contig13364.2521.1 vs. uniprot
Match: H3HEB6_PHYRM (CHAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HEB6_PHYRM) HSP 1 Score: 87.8 bits (216), Expect = 1.650e-16 Identity = 75/223 (33.63%), Postives = 110/223 (49.33%), Query Frame = 1
Query: 1 IFTHLFSAPLIERKMA----------AGGSGCVL-VEKVDKLSYEGERDTLHRTLDNAGKQVRFLSEAANTKSFARAASPERECRIVHFTGHGVPGQLTFEDDSGQLQYVDEAELLSMLLRGRKESGGGGVGLGGGSRKHLPAHAXXXXXXXPAAGGYAGGLGFEGGIGYAPFVDVSESVEPAARLGEGGSSGVRDGAPRTGLQLVFLSSCHSQSVAKCFIEA 636
IF HL S+PL+ R+ + AG SG +E V+ + + ER L +TL + +++ + SE A+ +F + S CR +HF+GHGVPGQ+ FE G+ Q+V + EL +LL G ES H XXXXXXX ++ES + ++ L V D P+ LQLVF+S+CHS+SVA+ F+ A
Sbjct: 5 IFAHLHSSPLVVRRRSGANWRSLSPHAGASGSSSGLEAVELIDVKAERLLLLQTLRESRRRLAWHSEVADLHAFRKVLS--FGCRALHFSGHGVPGQVIFETRKGEAQFVSQQELQDLLLAGGAES-------------HXXXXXXXXXXXXXXXX---------------XXXKLTESGDESSTLSP---PPVHD-KPKVPLQLVFVSACHSESVAQAFVSA 193
BLAST of mRNA_E-fasciculatus_F_contig13364.2521.1 vs. uniprot
Match: A0A6A3NIE2_9STRA (SH2 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NIE2_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 4.580e-16 Identity = 73/223 (32.74%), Postives = 110/223 (49.33%), Query Frame = 1
Query: 1 IFTHLFSAPLIERKMA----------AGGSGCVL-VEKVDKLSYEGERDTLHRTLDNAGKQVRFLSEAANTKSFARAASPERECRIVHFTGHGVPGQLTFEDDSGQLQYVDEAELLSMLLRGRKESGGGGVGLGGGSRKHLPAHAXXXXXXXPAAGGYAGGLGFEGGIGYAPFVDVSESVEPAARLGEGGSSGVRDGAPRTGLQLVFLSSCHSQSVAKCFIEA 636
IF HL S+PL+ R+ A AG +G +E V+ + + ER L +TL +G+++ + SE A+ +F + S CR +HF+GHGVPGQ+ FE G+ Q+V + EL +LL G E+ R+ XXXXXXX ++V + R+ G + P+ LQLVF+S+CHS+SVA+ F+ A
Sbjct: 5 IFAHLHSSPLVVRRRAGANWRSLSPHAGENGTSSGLEAVELIDVKAERRLLLQTLRESGRRLAWHSEVADLHAFRKILS--FGCRALHFSGHGVPGQVIFETRKGEAQFVSQQELQDLLLAGGAENRRPXXXXXXXIRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXSDDAVVTSHRVERGWVALEPPPRPKVPLQLVFVSACHSESVAQAFVSA 221
BLAST of mRNA_E-fasciculatus_F_contig13364.2521.1 vs. uniprot
Match: W2PHG1_PHYPN (SH2 domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2PHG1_PHYPN) HSP 1 Score: 84.7 bits (208), Expect = 2.100e-15 Identity = 77/224 (34.38%), Postives = 106/224 (47.32%), Query Frame = 1
Query: 1 IFTHLFSAPLIERKMAAG------------GSGCVLVEKVDKLSYEGERDTLHRTLDNAGKQVRFLSEAANTKSFARAASPERECRIVHFTGHGVPGQLTFEDDSGQLQYVDEAELLSMLLRGRKESGGGGVGLGGGSRKHLPAHAXXXXXXXPAAGGYAGGLGFEGGIGYAPFVDVSESVEPAARLGEGGSSGVRDGAPRTGLQLVFLSSCHSQSVAKCFIEA 636
IF HL S+PL+ R+ + GS L E V+ + + ER L TL +G+++ + SE A+ +F + S CR +HF+GHGVPGQ+ FE G+ Q+V + EL +LL G ES XXXXXXX + A F S VE R S G P+ LQLVF+S+CHS+SVA+ F+ A
Sbjct: 5 IFAHLHSSPLVVRRHSGANWRSLSPHADINGSSSGL-EAVELIDVKAERRLLLETLRESGRKLAWHSEVADLHAFRKVLS--FGCRALHFSGHGVPGQVIFETRKGEAQFVSQQELQDLLLAGGAESRRPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDDAT--AGFAIRSHRVE---RGWVALSPPPMHGKPKIPLQLVFVSACHSESVAQAFVSA 220
BLAST of mRNA_E-fasciculatus_F_contig13364.2521.1 vs. uniprot
Match: A0A3R7G588_9STRA (CHAT domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G588_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 2.430e-15 Identity = 77/233 (33.05%), Postives = 111/233 (47.64%), Query Frame = 1
Query: 1 IFTHLFSAPLIERKMAAGG-----------SGCVLVEKVDKLSYEGERDTLHRTLDNAGKQVRFLSEAANTKSFARAASPERECRIVHFTGHGVPGQLTFEDDSGQLQYVDEAELLSMLLRGRKESG----------GGGVGLGGGSRKHLPAHAXXXXXXXPAAGGYAGGLGFEGGIGYAPFVDVSESVEPAARLGEGGSSGVRDGAPRTGLQLVFLSSCHSQSVAKCFIEA 636
IF HL S+PL+ R+ + S +E V+ + + ER L +TL +G+++ + SE A+ +F + S CR +HF+GHGVPGQ+ FE G+ Q+V + EL +LL G ES G G G L XXXXXXX ++ GL G +V +S P P+ LQLVF+S+CHS+SVA+ F+ A
Sbjct: 5 IFAHLHSSPLVVRRRSGANWRSLSPHAGLNSSANGLEAVELIDVKEERRLLLQTLRESGRRLAWHSEVADLHAFRKVLS--FGCRALHFSGHGVPGQVIFETRKGEAQFVSQQELQDLLLAGGAESRRPRXXXXXKHGSKQGEKG---SDLXXXXXXXXXXXXSSDDAISGLAVRGHRVEKGWVSLSPP--PVHEK------------PKVPLQLVFVSACHSESVAQAFVCA 218
BLAST of mRNA_E-fasciculatus_F_contig13364.2521.1 vs. uniprot
Match: A0A8J5J361_9STRA (CHAT domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J361_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.240e-14 Identity = 75/231 (32.47%), Postives = 107/231 (46.32%), Query Frame = 1
Query: 1 IFTHLFSAPLIERKMA------------AGGSGCVLVEKVDKLSYEGERDTLHRTLDNAGKQVRFLSEAANTKSFARAASPERECRIVHFTGHGVPGQLTFEDDSGQLQYVDEAELLSMLLRGRKESGGGGVGLGGGSRKHLPAHAXXXXXXXPAAGGYAGGLGFEGGIGYAPFVDVSESVEPAA----RLGEGG---SSGVRDGAPRTGLQLVFLSSCHSQSVAKCFIEA 636
IF HL S+PL+ R+ + A GS L E V+ + + ER L TL +G+++ + SE A+ +F + S CR +HF+GHGVPGQ+ FE G+ Q+V + EL +LL G ES R+ XXXXXXX ++ A R+ G S P+ LQLVF+S+CHS+SVA+ F+ A
Sbjct: 5 IFAHLHSSPLVVRRRSGANWRSLSPHADANGSSSGL-EAVELIDVKAERRLLLETLRESGRRLAWHSEVADLHAFRKVLS--FGCRALHFSGHGVPGQVIFETRKGEAQFVSQQELQDLLLAGGAES-----------RRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDATSGLAIRSHRVERGWVALSPPPVHEKPKIPLQLVFVSACHSESVAQAFVSA 221
BLAST of mRNA_E-fasciculatus_F_contig13364.2521.1 vs. uniprot
Match: A0A662WH33_9STRA (SH2 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WH33_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.430e-14 Identity = 75/235 (31.91%), Postives = 109/235 (46.38%), Query Frame = 1
Query: 1 IFTHLFSAPLIERKMA----------AGGSGCVL---VEKVDKLSYEGERDTLHRTLDNAGKQVRFLSEAANTKSFARAASPERECRIVHFTGHGVPGQLTFEDDSGQLQYVDEAELLSMLLRGRKES-----------GGGGVGLGGGSRKHLPAHAXXXXXXXPAAGGYAGGLGFEGGIGYAPFVDVSESVEPAARLGEGGSSGVRDGAPRTGLQLVFLSSCHSQSVAKCFIE 633
IF HL S+PL+ R+ AG L +E V+ + + ER L L +G+++ + SE A+ +F + S CR +HF+GHGVPGQ+ FE+ G+ Q++ + EL +LL G E+ GG G XXXXXXX ++ GL S VE R S+ P+ LQLVF+S+CHS+SVA+ F+
Sbjct: 5 IFAHLHSSPLVVRRRTGADWRSLSSHAGSESSSLASGLEAVELIDVKAERRLLLECLRESGRRLAWHSEVADLHAFRKVLS--FGCRALHFSGHGVPGQVIFENKKGEAQFISQQELKDLLLAGGAETRRPRXXXXXXHGGQNKRSGESXXXXXXXXXXXXXXXXXSSDDALAGLKIS-----------SHKVE---RGWVALSAPPTHEKPKVPLQLVFVSACHSESVAEAFVS 223
BLAST of mRNA_E-fasciculatus_F_contig13364.2521.1 vs. uniprot
Match: A0A2P4WYM4_9STRA (CHAT domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WYM4_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 5.380e-14 Identity = 70/223 (31.39%), Postives = 106/223 (47.53%), Query Frame = 1
Query: 1 IFTHLFSAPLIERKMA----------AGGSGCVL-VEKVDKLSYEGERDTLHRTLDNAGKQVRFLSEAANTKSFARAASPERECRIVHFTGHGVPGQLTFEDDSGQLQYVDEAELLSMLLRGRKESGGGGVGLGGGSRKHLPAHAXXXXXXXPAAGGYAGGLGFEGGIGYAPFVDVSESVEPAARLGEGGSSGVRDGAPRTGLQLVFLSSCHSQSVAKCFIEA 636
IF HL S+PL+ R+ + AG +G +E V+ + + ER L +TL + +++ + SE A+ +F + S CR +HF+GHGVPGQ+ FE G+ Q+V + EL +LL G E+ R XXXXXXX + ++ + R S P+ LQLVF+S+CHS+SVA+ F+ A
Sbjct: 4 IFAHLHSSPLVVRRRSGANWRSLSPHAGVNGSSSGLEAVELIDVKAERLLLLQTLRESNRRLAWHSEVADLHAFRKVLS--FGCRALHFSGHGVPGQVIFETKKGEAQFVSQQELQDLLLAGGAEA-----------RPRXXXXXXXXXXXXXXXXXXXXXCXXXXXXSDDATLGLAVTSHRVERGWVALSPPRSHEKPKVPLQLVFVSACHSESVAQAFVSA 213 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13364.2521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13364.2521.1 >prot_E-fasciculatus_F_contig13364.2521.1 ID=prot_E-fasciculatus_F_contig13364.2521.1|Name=mRNA_E-fasciculatus_F_contig13364.2521.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=215bp IFTHLFSAPLIERKMAAGGSGCVLVEKVDKLSYEGERDTLHRTLDNAGKQback to top mRNA from alignment at E-fasciculatus_F_contig13364:2223..2987+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13364.2521.1 ID=mRNA_E-fasciculatus_F_contig13364.2521.1|Name=mRNA_E-fasciculatus_F_contig13364.2521.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=765bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13364:2223..2987+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13364:2223..2987+ >mRNA_E-fasciculatus_F_contig13364.2521.1 ID=mRNA_E-fasciculatus_F_contig13364.2521.1|Name=mRNA_E-fasciculatus_F_contig13364.2521.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1290bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13364:2223..2987+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |