mRNA_E-fasciculatus_F_contig13289.2474.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13289.2474.1
Unique NamemRNA_E-fasciculatus_F_contig13289.2474.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13289.2474.1 vs. uniprot
Match: D7G0C8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0C8_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 6.290e-46
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:    1 KVVEDGDHAEVVETLQGLKDSEPQLLVAVLDALGNLSLPPRLLGGITEDALGLLDSAQPSTLPVLVRFLLETATADTADAVVKELRERLRL 273
            +VVEDGDHAEVVETLQ LKDSEPQLLVAVLDALGNLSLPPRLLGGITEDALGLLDSAQPSTLPVLVRFLLETATADTADAVV+ELRERLRL
Sbjct:  132 EVVEDGDHAEVVETLQSLKDSEPQLLVAVLDALGNLSLPPRLLGGITEDALGLLDSAQPSTLPVLVRFLLETATADTADAVVRELRERLRL 222
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BLAST of mRNA_E-fasciculatus_F_contig13289.2474.1 vs. uniprot
Match: A0A835YSY6_9STRA (Fanconi anaemia protein FancD2 nuclease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSY6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.590e-13
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:   28 EVVETLQGLKDSEPQLLVAVLDALGNLSLPPRLLGGITEDALGLLDSAQPSTLPVLVRFLLETATADTADAVVKELRERLRL 273
            +V+  L   + ++P LLVAVLD   ++ LP  LL  IT D L LL SA+ +TLP+LVRFLLE+A AD    VV+ELR +LRL
Sbjct:    9 QVIRCLSEEQQAKPSLLVAVLDTYCSMPLPADLLQTITADVLQLLPSAEHATLPMLVRFLLESAGADNMADVVRELRAKLRL 90
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BLAST of mRNA_E-fasciculatus_F_contig13289.2474.1 vs. uniprot
Match: UPI001B88765D (LOW QUALITY PROTEIN: Fanconi anemia group D2 protein-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88765D)

HSP 1 Score: 71.2 bits (173), Expect = 1.940e-12
Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    1 KVVEDGDHAEVVETLQGLKDSEPQLLVAVLDALGNLSLPPRLLGGITEDALGLLDSAQPSTLPVLVRFLLETATADTADAVVKELRERL 267
            ++VED +H++V +TL+ +     QL V +LDAL NL+L P LL  +    +  LDS +   LPV+V+FLL+TAT+  A  VV E+R  L
Sbjct:  208 EIVEDSEHSDVAKTLRDILLQGNQLTVPILDALSNLALKPDLLTEVRGSVMQTLDSVEMKDLPVVVKFLLQTATSQDALEVVSEIRANL 296
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BLAST of mRNA_E-fasciculatus_F_contig13289.2474.1 vs. uniprot
Match: A0A7S2RXY2_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RXY2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.290e-12
Identity = 36/95 (37.89%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    1 KVVEDGDHAEVVETLQGLKDSEPQLLVAVLDALGNLSLPPRLLGGITEDALGLLDSAQPSTLPVLVRFLLET-------ATADTADAVVKELRER 264
            +V+ED +H+  V+  + + + E +L V ++++LGNL +PP ++G + E  LG+L+SA  S LPV VRFLLE+       +       VV ELR++
Sbjct:    1 EVLEDSNHSVAVDRFRQMLECERELTVPIIESLGNLRIPPNMVGALRETVLGILESAPFSDLPVAVRFLLESLDRGGDFSVKQIKSKVVSELRQK 95
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BLAST of mRNA_E-fasciculatus_F_contig13289.2474.1 vs. uniprot
Match: A0A0D2WL35_CAPO3 (Uncharacterized protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WL35_CAPO3)

HSP 1 Score: 65.9 bits (159), Expect = 1.540e-10
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:    4 VVEDGDHAEVVETLQGLKDSEPQLLVAVLDALGNLSLPPRLLGGITEDALGLLDSAQPSTLPVLVRFLLETATADTADAVVKELRERL 267
            ++ D +H  +V+ L  L  SEP+L+V +LDAL NL+LPP  +  I +  L +L S   S +PV+VRF+ +   AD +  V+ +LR  L
Sbjct:  465 ILNDAEHRRMVDCLSMLVTSEPKLMVTILDALSNLTLPPHQVDEIRDKILKMLASVDVSDMPVVVRFIQQFINADNSVEVIFKLRGEL 552
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BLAST of mRNA_E-fasciculatus_F_contig13289.2474.1 vs. uniprot
Match: A0A2R6XWB7_MARPO (Uncharacterized protein n=5 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XWB7_MARPO)

HSP 1 Score: 65.1 bits (157), Expect = 2.840e-10
Identity = 34/90 (37.78%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    1 KVVEDGDHAEVVETLQGLKDSEPQLLVAVLDALGNLSLPPRLLGGITEDALGLLDSAQPSTLPVLVRFLLETATADTADAVVKELRERLR 270
            +V+ D DH  VV+ L+G+   + QL+V +LDA  + +L  +L   +   AL  L SA    LP++V+FLL++AT+     +V++LRE L+
Sbjct:  207 EVIVDADHEMVVQALEGMLQEDLQLVVPILDAFSSFNLEEKLFEQVVALALSSLRSADAEDLPLVVKFLLQSATSANVTEIVQQLRENLQ 296
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BLAST of mRNA_E-fasciculatus_F_contig13289.2474.1 vs. uniprot
Match: UPI000D176C49 (Fanconi anemia group D2 protein-like isoform X2 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=UPI000D176C49)

HSP 1 Score: 63.9 bits (154), Expect = 7.220e-10
Identity = 31/90 (34.44%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    1 KVVEDGDHAEVVETLQGLKDSEPQLLVAVLDALGNLSLPPRLLGGITEDALGLLDSAQPSTLPVLVRFLLETATADTADAVVKELRERLR 270
            +V+ D DH  V++ L+ +   + QL+V VLDA  N++L P L   +   A+  L +A    LP++++FLL++AT+     ++++LRE L+
Sbjct:  202 EVIVDADHEMVMQALEQMLQEDLQLVVPVLDAFSNMNLEPELFEQVVTVAVSSLRTADAEDLPLVIKFLLQSATSTNVKLIIEQLREHLQ 291
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BLAST of mRNA_E-fasciculatus_F_contig13289.2474.1 vs. uniprot
Match: A0A2K1KVD6_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KVD6_PHYPA)

HSP 1 Score: 63.9 bits (154), Expect = 7.250e-10
Identity = 31/90 (34.44%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    1 KVVEDGDHAEVVETLQGLKDSEPQLLVAVLDALGNLSLPPRLLGGITEDALGLLDSAQPSTLPVLVRFLLETATADTADAVVKELRERLR 270
            +V+ D DH  V++ L+ +   + QL+V VLDA  N++L P L   +   A+  L +A    LP++++FLL++AT+     ++++LRE L+
Sbjct:  202 EVIVDADHEMVMQALEQMLQEDLQLVVPVLDAFSNMNLEPELFEQVVTVAVSSLRTADAEDLPLVIKFLLQSATSTNVKLIIEQLREHLQ 291
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BLAST of mRNA_E-fasciculatus_F_contig13289.2474.1 vs. uniprot
Match: A0A397SPG3_9GLOM (Fanconi anaemia protein FANCD2 n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SPG3_9GLOM)

HSP 1 Score: 63.2 bits (152), Expect = 1.350e-9
Identity = 31/89 (34.83%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:    1 KVVEDGDHAEVVETLQGLKDSEPQLLVAVLDALGNLSLPPRLLGGITEDALGLLDSAQPSTLPVLVRFLLETATADTADAVVKELRERL 267
            +++ D +   V++TL  L D   +L+V +LDAL N ++    +  I E     L+SA    LP++++FLL+TAT++ A  +VK++RE++
Sbjct:  180 EIINDSEQKTVIQTLIELMDQNHRLIVPILDALSNFTVQEDYMNKIHETIFDRLESADLEDLPLVIKFLLQTATSEDAYEIVKQIREKV 268
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BLAST of mRNA_E-fasciculatus_F_contig13289.2474.1 vs. uniprot
Match: A0A507FI53_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FI53_9FUNG)

HSP 1 Score: 62.8 bits (151), Expect = 1.850e-9
Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:    1 KVVEDGDHAEVVETLQGLKDSEPQLLVAVLDALGNLSLPPRLLGGITEDALGLLDSAQPSTLPVLVRFLLETATADTADAVVKELRERL 267
            +++ D    +VV  LQ        + V VLD LG + +PP  L  IT+  L L+D  Q  +LPV++RFLL+TA AD  + ++  +R+ +
Sbjct:  232 EIMPDSGLEDVVNALQESMTRNVDVTVCVLDTLGTIGVPPHKLPEITDSVLELMDQTQVDSLPVIIRFLLQTAPADKINELIPRMRDAM 320
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13289.2474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0C8_ECTSI6.290e-4696.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YSY6_9STRA1.590e-1352.44Fanconi anaemia protein FancD2 nuclease-domain-con... [more]
UPI001B88765D1.940e-1243.82LOW QUALITY PROTEIN: Fanconi anemia group D2 prote... [more]
A0A7S2RXY2_9STRA6.290e-1237.89Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A0D2WL35_CAPO31.540e-1039.77Uncharacterized protein n=2 Tax=Capsaspora owczarz... [more]
A0A2R6XWB7_MARPO2.840e-1037.78Uncharacterized protein n=5 Tax=Marchantia polymor... [more]
UPI000D176C497.220e-1034.44Fanconi anemia group D2 protein-like isoform X2 n=... [more]
A0A2K1KVD6_PHYPA7.250e-1034.44Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A397SPG3_9GLOM1.350e-934.83Fanconi anaemia protein FANCD2 n=1 Tax=Glomus cere... [more]
A0A507FI53_9FUNG1.850e-935.96Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13289contigE-fasciculatus_F_contig13289:2350..2882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.6
Seed ortholog evalue1.1e-38
Seed eggNOG ortholog2880.D7G0C8
Preferred nameFANCD2
KEGG koko:K10891
KEGG Pathwayko03460,map03460
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000280,GO:0000793,GO:0002682,GO:0002694,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006289,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007127,GO:0007129,GO:0007275,GO:0007276,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009653,GO:0009887,GO:0009889,GO:0009966,GO:0009987,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010646,GO:0016043,GO:0016604,GO:0019219,GO:0019222,GO:0019827,GO:0019899,GO:0019953,GO:0022402,GO:0022414,GO:0023051,GO:0031323,GO:0031326,GO:0031347,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0033554,GO:0034599,GO:0034641,GO:0036297,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0045132,GO:0045143,GO:0045580,GO:0045589,GO:0045595,GO:0045619,GO:0045786,GO:0045930,GO:0046483,GO:0048285,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048731,GO:0048854,GO:0048856,GO:0050727,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051052,GO:0051090,GO:0051171,GO:0051239,GO:0051249,GO:0051252,GO:0051276,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060322,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0070182,GO:0070192,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0090329,GO:0097150,GO:0098727,GO:0098813,GO:0140013,GO:1901360,GO:1902105,GO:1903046,GO:1903047,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000348,GO:2001141
EggNOG free text desc.DNA polymerase binding
EggNOG OGsKOG4712@1,KOG4712@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927831.0879745-CDS-E-fasciculatus_F_contig13289:2349..24271622927831.0879745-CDS-E-fasciculatus_F_contig13289:2349..2427Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13289 2350..2427 -
1695995713.412616-CDS-E-fasciculatus_F_contig13289:2349..24271695995713.412616-CDS-E-fasciculatus_F_contig13289:2349..2427Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13289 2350..2427 -
1622927831.1184351-CDS-E-fasciculatus_F_contig13289:2687..28821622927831.1184351-CDS-E-fasciculatus_F_contig13289:2687..2882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13289 2688..2882 -
1695995713.4238958-CDS-E-fasciculatus_F_contig13289:2687..28821695995713.4238958-CDS-E-fasciculatus_F_contig13289:2687..2882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13289 2688..2882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13289.2474.1prot_E-fasciculatus_F_contig13289.2474.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13289 2350..2882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13289.2474.1

>prot_E-fasciculatus_F_contig13289.2474.1 ID=prot_E-fasciculatus_F_contig13289.2474.1|Name=mRNA_E-fasciculatus_F_contig13289.2474.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=91bp
KVVEDGDHAEVVETLQGLKDSEPQLLVAVLDALGNLSLPPRLLGGITEDA
LGLLDSAQPSTLPVLVRFLLETATADTADAVVKELRERLRL
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mRNA from alignment at E-fasciculatus_F_contig13289:2350..2882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13289.2474.1 ID=mRNA_E-fasciculatus_F_contig13289.2474.1|Name=mRNA_E-fasciculatus_F_contig13289.2474.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=533bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13289:2350..2882- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGTGGTGGAAGATGGTGACCACGCGGAGGTTGTGGAGACCCTCCAGGG
CCTCAAGGACTCAGAGCCGCAACTCCTCGTGGCCGTCCTCGACGCCCTCG
GCAACCTGTCACTGCCGCCTCGCCTGCTGGGGGGCATCACCGAGGACGCG
CTTGGGTTGCTGGACAGCGCGCAGCCCTCCACCCTCCCTGTGTTGGTGAG
GAGTAGTTGGTGGTGGCGGTTCTGTTGTCCTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCCTGCTGTC
GTAATTGTTGCTAATAGTTTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGT
GGTGGTGCTCCCACTCGGTTTTTGTCGTTCGTGTCACCCGTCGTGCCCTT
TCGCACAAACTGACCCCCCCCCCCCGCCCTGGCCTTACGACGACGAAACC
ACCAGGTCCGTTTTTTACTCGAAACGGCCACGGCGGACACAGCCGACGCC
GTGGTTAAGGAGTTGCGAGAGAGACTGAGGCTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13289:2350..2882-

>mRNA_E-fasciculatus_F_contig13289.2474.1 ID=mRNA_E-fasciculatus_F_contig13289.2474.1|Name=mRNA_E-fasciculatus_F_contig13289.2474.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=546bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13289:2350..2882- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGTGGTGGAAGATGGTGACCACGCGGAGGTTGTGGAGACCCTCCAGGG
CCTCAAGGACTCAGAGCCGCAACTCCTCGTGGCCGTCCTCGACGCCCTCG
GCAACCTGTCACTGCCGCCTCGCCTGCTGGGGGGCATCACCGAGGACGCG
CTTGGGTTGCTGGACAGCGCGCAGCCCTCCACCCTCCCTGTGTTGAAGGT
GGTGGAAGATGGTGACCACGCGGAGGTTGTGGAGACCCTCCAGGGCCTCA
AGGACTCAGAGCCGCAACTCCTCGTGGCCGTCCTCGACGCCCTCGGCAAC
CTGTCACTGCCGCCTCGCCTGCTGGGGGGCATCACCGAGGACGCGCTTGG
GTTGCTGGACAGCGCGCAGCCCTCCACCCTCCCTGTGTTGGTCCGTTTTT
TACTCGAAACGGCCACGGCGGACACAGCCGACGCCGTGGTTAAGGAGTTG
CGAGAGAGACTGAGGCTCGTCCGTTTTTTACTCGAAACGGCCACGGCGGA
CACAGCCGACGCCGTGGTTAAGGAGTTGCGAGAGAGACTGAGGCTC
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