mRNA_E-fasciculatus_F_contig13272.2463.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13272.2463.1
Unique NamemRNA_E-fasciculatus_F_contig13272.2463.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13272.2463.1 vs. uniprot
Match: D7G0D7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0D7_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 6.080e-48
Identity = 80/87 (91.95%), Postives = 80/87 (91.95%), Query Frame = 1 
Query:    1 LQDEDFLERVSVNFEVSKTPEGSKVEPSCVREMAMCLRGSWYTISAKDGTFPVEDPVKSLDVQILYDNLLNPVLNIGNPRADERIKY 261
              DEDFLERVSVNFEVS TPEGSKVEP  VREMAMCLRGSWYTI AKDGTFP EDPVKSLDVQILYDNLLNPVLNIGNPRADERIKY
Sbjct:  270 FSDEDFLERVSVNFEVSTTPEGSKVEPGRVREMAMCLRGSWYTIRAKDGTFPAEDPVKSLDVQILYDNLLNPVLNIGNPRADERIKY 356
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BLAST of mRNA_E-fasciculatus_F_contig13272.2463.1 vs. uniprot
Match: A0A661UQR2_9BACT (DUF1015 domain-containing protein (Fragment) n=1 Tax=Candidatus Cloacimonetes bacterium TaxID=2030808 RepID=A0A661UQR2_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 1.460e-21
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:   10 EDFLERVSVNFEVSKTPEGSKVEPSCVREMAMCLRGSWYTISAKDGTFPVEDPVKSLDVQILYDNLLNPVLNIGNPRADERIKY 261
            EDFL++VS NF++          P+ +    M L G+WY ++AKDG+F   DPV+SLDV IL DNLLNP+L IG+PR D+RI +
Sbjct:   95 EDFLKKVSENFDIQVYSNSEGYRPTKLHNFGMYLDGTWYNLTAKDGSFDKNDPVRSLDVAILQDNLLNPILGIGDPRKDKRIDF 178
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BLAST of mRNA_E-fasciculatus_F_contig13272.2463.1 vs. uniprot
Match: A0A3R5QQE6_9CLOT (DUF1015 domain-containing protein n=2 Tax=Clostridium TaxID=1485 RepID=A0A3R5QQE6_9CLOT)

HSP 1 Score: 93.2 bits (230), Expect = 1.860e-20
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 LQDEDFLERVSVNFEVSKTPEGSKVEPSCVREMAMCLRGSWYTISAKDGTFPVEDPVKSLDVQILYDNLLNPVLNIGNPRADERIKY 261
            L +EDFL ++   F V+    G + +P   R   M L G+WY + AK G+F  EDPVKSLDV IL DNLL+P+L+I +PR+D+RI +
Sbjct:  265 LSNEDFLSKIKEKFSVTTIEGGKQYKPQSKRSFGMFLDGTWYKLEAKSGSFDAEDPVKSLDVSILQDNLLSPILDIKDPRSDKRIDF 351
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BLAST of mRNA_E-fasciculatus_F_contig13272.2463.1 vs. uniprot
Match: A0A117M862_9BACT (Uncharacterized protein (Fragment) n=4 Tax=Candidatus Marinimicrobia TaxID=62680 RepID=A0A117M862_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 1.420e-19
Identity = 38/87 (43.68%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 LQDEDFLERVSVNFEVSKTPEGSKVEPSCVREMAMCLRGSWYTISAKDGTFPVEDPVKSLDVQILYDNLLNPVLNIGNPRADERIKY 261
            L +++FL++VS  F+V K       +P+    + M L+G WYT+ A+ GTF   DPV+ LDV +L+ NLL P+LNIG+PR D+R+ +
Sbjct:   46 LPEKEFLKKVSQKFDVKKVCCVQVAKPAEKHHVGMYLKGEWYTLKARPGTFDESDPVECLDVSVLHQNLLTPILNIGDPRTDDRVDF 132
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BLAST of mRNA_E-fasciculatus_F_contig13272.2463.1 vs. uniprot
Match: A0A7V3QYP2_9BACT (DUF1015 domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V3QYP2_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 1.760e-19
Identity = 47/87 (54.02%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:    1 LQDEDFLERVSVNFEVSKTPEGSKVEPSCVREMAMCLRGSWYTISAKDGTFPVEDPVKSLDVQILYDNLLNPVLNIGNPRADERIKY 261
            L  E FLE+V V FEV  TP  S  +P   R+  M L G W+ ++AK GTFP EDPV+ LDV IL DNLL PVL I +PR D+RI +
Sbjct:  265 LTPEAFLEKVRVAFEV--TP-ASAPKPPAARQFGMFLSGKWHRLAAKPGTFPAEDPVRGLDVSILQDNLLGPVLGIADPRTDKRIDF 348
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BLAST of mRNA_E-fasciculatus_F_contig13272.2463.1 vs. uniprot
Match: A0A355GWD8_9FIRM (DUF1015 domain-containing protein n=7 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A355GWD8_9FIRM)

HSP 1 Score: 90.1 bits (222), Expect = 2.480e-19
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:    1 LQDEDFLERVSVNFEVSKTPEGSK-VEPSCVREMAMCLRGSWYTISAKDGTFPVEDPVKSLDVQILYDNLLNPVLNIGNPRADERIKY 261
            L  E+FL+R    F + + P+GS   +P+      M L+GSWY I+AK GTF  +DPV +LDV IL +NLL+PVL IGNPR D+RI +
Sbjct:  265 LSTEEFLKRAGQVFTIERLPQGSAPAKPTQRHHFGMYLQGSWYRITAKPGTFDEKDPVAALDVSILQENLLSPVLAIGNPRTDKRINF 352
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BLAST of mRNA_E-fasciculatus_F_contig13272.2463.1 vs. uniprot
Match: A0A4P1RYJ4_9BACT (DUF1015 domain-containing protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A4P1RYJ4_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 4.640e-19
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 LQDEDFLERVSVNFEVSKTPEGSKVEPSCVREMAMCLRGSWYTISAKDGTFPVEDPVKSLDVQILYDNLLNPVLNIGNPRADERIKY 261
            L  E FL +VS  F V K  E    EP     + M + G WYT++AK+GT+P +DPV SLDV IL +NLL PVL IG+PR D+RI +
Sbjct:  265 LTKEQFLAKVSEKFNVEKNEEK---EPGYPTNVCMYIDGDWYTLTAKEGTYPKDDPVHSLDVSILQENLLTPVLGIGDPRTDKRIDF 348
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BLAST of mRNA_E-fasciculatus_F_contig13272.2463.1 vs. uniprot
Match: I2F5C3_9BACT (Uncharacterized protein n=4 Tax=Mesotoga TaxID=1184396 RepID=I2F5C3_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 4.670e-19
Identity = 44/87 (50.57%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 LQDEDFLERVSVNFEVSKTPEGSKVEPSCVREMAMCLRGSWYTISAKDGTFPVEDPVKSLDVQILYDNLLNPVLNIGNPRADERIKY 261
            + + +FLE+V   FEV   P+    EP+   E  MCL G WY ++AK GTF   DPV SLDV IL  NLL+PVL I NPR D RI +
Sbjct:  265 MSENEFLEKVGRVFEVEDAPK-DPYEPAMRHEFGMCLMGRWYKLTAKKGTFDENDPVSSLDVDILQKNLLSPVLGIDNPRKDSRIDF 350
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13272.2463.1 vs. uniprot
Match: A0A7C5DPB9_9BACT (DUF1015 domain-containing protein n=1 Tax=Candidatus Cloacimonetes bacterium TaxID=2030808 RepID=A0A7C5DPB9_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 1.700e-18
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 LQDEDFLERVSVNFEVSKTPEGSKVEPSCVREMAMCLRGSWYTISAKDGTFPVEDPVKSLDVQILYDNLLNPVLNIGNPRADERIKY 261
            L +E FL+ V  NFE+ +  +     P  +    M L G WY + AK GTF   DPVKSLDV IL +NLL+P+L IG+PR D+RI +
Sbjct:  265 LSNEKFLKAVQENFEIEEFSKTEPYHPKGLHNFGMYLNGIWYDLKAKPGTFDENDPVKSLDVSILQENLLSPILRIGDPRKDKRIDF 351
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13272.2463.1 vs. uniprot
Match: UPI001F259451 (DUF1015 family protein n=1 Tax=Clostridium hydrogenum TaxID=2855764 RepID=UPI001F259451)

HSP 1 Score: 87.8 bits (216), Expect = 1.700e-18
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:   10 EDFLERVSVNFEVSKTPEGSKVEPSCVREMAMCLRGSWYTISAKDGTFPVEDPVKSLDVQILYDNLLNPVLNIGNPRADERIKY 261
            E+F+ ++   FEV K P+G K +PS      M    +WY ++AK  TF   DPV SLDV IL DNLL P+L IG+PR DERI +
Sbjct:  268 EEFINKIEGKFEVEKLPKGKKFKPSEKHTFGMYTENNWYKLTAKKETFNDNDPVLSLDVSILQDNLLKPILGIGDPRNDERIDF 351
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13272.2463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0D7_ECTSI6.080e-4891.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A661UQR2_9BACT1.460e-2150.00DUF1015 domain-containing protein (Fragment) n=1 T... [more]
A0A3R5QQE6_9CLOT1.860e-2048.28DUF1015 domain-containing protein n=2 Tax=Clostrid... [more]
A0A117M862_9BACT1.420e-1943.68Uncharacterized protein (Fragment) n=4 Tax=Candida... [more]
A0A7V3QYP2_9BACT1.760e-1954.02DUF1015 domain-containing protein n=1 Tax=Acidobac... [more]
A0A355GWD8_9FIRM2.480e-1950.00DUF1015 domain-containing protein n=7 Tax=Firmicut... [more]
A0A4P1RYJ4_9BACT4.640e-1950.57DUF1015 domain-containing protein n=2 Tax=Acidobac... [more]
I2F5C3_9BACT4.670e-1950.57Uncharacterized protein n=4 Tax=Mesotoga TaxID=118... [more]
A0A7C5DPB9_9BACT1.700e-1847.13DUF1015 domain-containing protein n=1 Tax=Candidat... [more]
UPI001F2594511.700e-1848.81DUF1015 family protein n=1 Tax=Clostridium hydroge... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13272contigE-fasciculatus_F_contig13272:13..757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue7.8e-39
Seed eggNOG ortholog2880.D7G0D7
EggNOG free text desc.Protein of unknown function (DUF1015)
EggNOG OGs2SMYX@2759,COG4198@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927830.0039659-CDS-E-fasciculatus_F_contig13272:12..2011622927830.0039659-CDS-E-fasciculatus_F_contig13272:12..201Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13272 13..201 +
1695995712.8472188-CDS-E-fasciculatus_F_contig13272:12..2011695995712.8472188-CDS-E-fasciculatus_F_contig13272:12..201Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13272 13..201 +
1622927830.0139298-CDS-E-fasciculatus_F_contig13272:685..7571622927830.0139298-CDS-E-fasciculatus_F_contig13272:685..757Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13272 686..757 +
1695995712.858722-CDS-E-fasciculatus_F_contig13272:685..7571695995712.858722-CDS-E-fasciculatus_F_contig13272:685..757Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13272 686..757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13272.2463.1prot_E-fasciculatus_F_contig13272.2463.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13272 13..757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13272.2463.1

>prot_E-fasciculatus_F_contig13272.2463.1 ID=prot_E-fasciculatus_F_contig13272.2463.1|Name=mRNA_E-fasciculatus_F_contig13272.2463.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=87bp
LQDEDFLERVSVNFEVSKTPEGSKVEPSCVREMAMCLRGSWYTISAKDGT
FPVEDPVKSLDVQILYDNLLNPVLNIGNPRADERIKY
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mRNA from alignment at E-fasciculatus_F_contig13272:13..757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13272.2463.1 ID=mRNA_E-fasciculatus_F_contig13272.2463.1|Name=mRNA_E-fasciculatus_F_contig13272.2463.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=745bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13272:13..757+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTCAGGACGAGGACTTTCTTGAGCGAGTTTCGGTGAACTTCGAAGTGTC
CAAGACGCCCGAGGGCTCGAAGGTGGAGCCCAGCTGCGTCAGGGAGATGG
CCATGTGCCTGCGAGGGAGTTGGTACACCATCAGCGCCAAGGACGGGACT
TTCCCTGTGGAGGACCCCGTAAAGTCGCTCGACGTGCAGGTGACCATGCG
AAGGGGGGAGCTGTAGAAAGTTGTTGGGGATAGATAGCAGTGGCAACCGG
GGTCTGTCTGATTTGCGAAGCTGGCGAAGGTGCAGACACGTACCATGGTA
AGACCGTTGGTGTTGTTCTAGGGCCGTGCCGCCGTTAGACTCACCTTCTC
GCAAGTTATTTAAAGTTCCGGTGTTGCATTCCTCCTGCCTGAACCCGGCT
GATACGTCTATTATGTTCGGCGCCAGGCTTGTGGATTGGAAGAAAACACA
CACACGCTCGCACGCACACTCTCACCCGCACGTACCCCGATGTCGTTACT
GGTGCTCTGCGATTTCAGATCCTGTATGCATGCGAGCACTTGCTCGATTC
CGTCCCGTTGGCATTGTGTCTGTTGTCGTTGTTGTTTCTCCGCTGCTTCA
GAACCTGTTAGACAACTGCTCAATCCCGTCCATTGCTGTCGTTGTTGCTG
CTCTCGGAACTCGGCCGTTTCAGATCCTATACGACAACCTTCTCAACCCC
GTCCTCAACATCGGAAACCCTAGAGCAGACGAGCGCATCAAATAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13272:13..757+

>mRNA_E-fasciculatus_F_contig13272.2463.1 ID=mRNA_E-fasciculatus_F_contig13272.2463.1|Name=mRNA_E-fasciculatus_F_contig13272.2463.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=522bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13272:13..757+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTCAGGACGAGGACTTTCTTGAGCGAGTTTCGGTGAACTTCGAAGTGTC
CAAGACGCCCGAGGGCTCGAAGGTGGAGCCCAGCTGCGTCAGGGAGATGG
CCATGTGCCTGCGAGGGAGTTGGTACACCATCAGCGCCAAGGACGGGACT
TTCCCTGTGGAGGACCCCGTAAAGTCGCTCGACGTGCAGCTTCAGGACGA
GGACTTTCTTGAGCGAGTTTCGGTGAACTTCGAAGTGTCCAAGACGCCCG
AGGGCTCGAAGGTGGAGCCCAGCTGCGTCAGGGAGATGGCCATGTGCCTG
CGAGGGAGTTGGTACACCATCAGCGCCAAGGACGGGACTTTCCCTGTGGA
GGACCCCGTAAAGTCGCTCGACGTGCAGATCCTATACGACAACCTTCTCA
ACCCCGTCCTCAACATCGGAAACCCTAGAGCAGACGAGCGCATCAAATAC
ATCCTATACGACAACCTTCTCAACCCCGTCCTCAACATCGGAAACCCTAG
AGCAGACGAGCGCATCAAATAC
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