mRNA_E-fasciculatus_F_contig13243.2448.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13243.2448.1
Unique NamemRNA_E-fasciculatus_F_contig13243.2448.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13243.2448.1 vs. uniprot
Match: D8LHZ3_ECTSI (Actin-related protein 2/3 complex subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHZ3_ECTSI)

HSP 1 Score: 377 bits (968), Expect = 6.390e-129
Identity = 187/194 (96.39%), Postives = 188/194 (96.91%), Query Frame = 1 
Query:    1 REYTAEIMFETFGVPGLYIAVQAVLALAASWSAKSVAERTLTGTVIDAGDGVTHIIPVAEGYVIGSCIKHIPLAGRDITQFIMEMLRDRKEPIPPEDLLDAARRIKEQHCYCAPDLAKEYSKYDKDPRKFFRMYTGKRKSGVEYSADVGYERFLGPXXXXXXEIVSSDFLTPLPQVVDEAILKCPIDSRRGLYK 582
            REYTAEIMFETFGVPGLYIAVQAVLALAASWSAKSVAERTLTGTVIDAGDGVTHIIPVAEGYVIGSCIKHIPLAGRDITQFIMEMLRDRKEPIPPEDLLDAARRIKEQHCYCAPDLAKEYSKYDKDPRKFFRMYTGKRK+GVEYSADVGYERFLGP      EIVSSDFLTPLPQVVDEAILKCPIDSRRGLYK
Sbjct:  102 REYTAEIMFETFGVPGLYIAVQAVLALAASWSAKSVAERTLTGTVIDAGDGVTHIIPVAEGYVIGSCIKHIPLAGRDITQFIMEMLRDRKEPIPPEDLLDAARRIKEQHCYCAPDLAKEYSKYDKDPRKFFRMYTGKRKNGVEYSADVGYERFLGPEMFFSPEIVSSDFLTPLPQVVDEAILKCPIDSRRGLYK 295
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BLAST of mRNA_E-fasciculatus_F_contig13243.2448.1 vs. uniprot
Match: A0A835YZY0_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY0_9STRA)

HSP 1 Score: 310 bits (793), Expect = 4.150e-102
Identity = 151/194 (77.84%), Postives = 173/194 (89.18%), Query Frame = 1 
Query:    1 REYTAEIMFETFGVPGLYIAVQAVLALAASWSAKSVAERTLTGTVIDAGDGVTHIIPVAEGYVIGSCIKHIPLAGRDITQFIMEMLRDRKEPIPPEDLLDAARRIKEQHCYCAPDLAKEYSKYDKDPRKFFRMYTGKRKSGVEYSADVGYERFLGPXXXXXXEIVSSDFLTPLPQVVDEAILKCPIDSRRGLYK 582
            REYTAEIMFETFGVPGLYIAVQAV+ALAASW++KS AERTLTGTVID+GDGVTH+IPVAEGYV+GS IKHIPLAGRD+TQF+M +LRDR+EP+PPEDLLD ARR+KE+HCY + DLAKEY+KYD DP K+ RMY G+RK+G  Y   +GYERF   XXXXXX   SSDF+TPLP+VVDEAILKCPID+RRGLYK
Sbjct:  121 REYTAEIMFETFGVPGLYIAVQAVMALAASWTSKSAAERTLTGTVIDSGDGVTHVIPVAEGYVLGSAIKHIPLAGRDMTQFVMNLLRDRREPVPPEDLLDVARRVKEEHCYVSNDLAKEYAKYDADPAKYLRMYRGERKNGTSYEVQIGYERFXXXXXXXXXXXXSSDFITPLPEVVDEAILKCPIDTRRGLYK 314
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BLAST of mRNA_E-fasciculatus_F_contig13243.2448.1 vs. uniprot
Match: A0A7S1XPQ5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPQ5_9STRA)

HSP 1 Score: 294 bits (753), Expect = 4.830e-97
Identity = 141/195 (72.31%), Postives = 166/195 (85.13%), Query Frame = 1 
Query:    1 REYTAEIMFETFGVPGLYIAVQAVLALAASWSAKSVAERTLTGTVIDAGDGVTHIIPVAEGYVIGSCIKHIPLAGRDITQFIMEMLRDRKEPIPPEDLLDAARRIKEQHCYCAPDLAKEYSKYDKDPRKFFRMYTG-KRKSGVEYSADVGYERFLGPXXXXXXEIVSSDFLTPLPQVVDEAILKCPIDSRRGLYK 582
            REYTAEIMFETF VPGLYIAVQAVLALAASW++K V ERTLTGTVID+GDGVTH+IPVAEGYVIGSCIKHIPLAGRDIT FI ++LRDR+EP+P ED L+ A+R+KE +CY  PD+AKE++KYD +P K+ + YTG KR++  EY  DVG+ERFLGP      EI +SDF  PLP+VVDEAI+KCPID+RRGLYK
Sbjct:   48 REYTAEIMFETFNVPGLYIAVQAVLALAASWTSKQVQERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPLAGRDITGFIQQLLRDRQEPVPAEDSLEVAKRVKEMYCYVCPDIAKEFAKYDNNPDKYVKTYTGTKRRTKEEYLVDVGFERFLGPEVFFNPEIFNSDFSKPLPEVVDEAIIKCPIDTRRGLYK 242
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BLAST of mRNA_E-fasciculatus_F_contig13243.2448.1 vs. uniprot
Match: A0A7R9UAQ1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAQ1_9STRA)

HSP 1 Score: 293 bits (751), Expect = 8.800e-96
Identity = 142/195 (72.82%), Postives = 165/195 (84.62%), Query Frame = 1 
Query:    1 REYTAEIMFETFGVPGLYIAVQAVLALAASWSAKSVAERTLTGTVIDAGDGVTHIIPVAEGYVIGSCIKHIPLAGRDITQFIMEMLRDRKEPIPPEDLLDAARRIKEQHCYCAPDLAKEYSKYDKDPRKFFRMYTG-KRKSGVEYSADVGYERFLGPXXXXXXEIVSSDFLTPLPQVVDEAILKCPIDSRRGLYK 582
            REYTAEIMFETF VPGLYIAVQAVLALAASW++K V ERTLTGTVID+GDGVTH+IPVAEGYVIGSCIKHIPLAGRDIT FI ++LRDR+EP+P ED L+ A+RIKE +CY  PD+AKE++KYD +P K+ + YTG KR++  EY  DVG+ERFLGP      EI ++DF  PLP VVDEAILKCPID+RRGLYK
Sbjct:  119 REYTAEIMFETFNVPGLYIAVQAVLALAASWTSKQVTERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPLAGRDITGFIQQLLRDRQEPVPAEDSLEVAKRIKEMYCYVCPDIAKEFAKYDGNPDKYIKTYTGTKRRTREEYLVDVGFERFLGPEVFFNPEIFNADFSAPLPTVVDEAILKCPIDTRRGLYK 313
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BLAST of mRNA_E-fasciculatus_F_contig13243.2448.1 vs. uniprot
Match: A0A8J2SER0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SER0_9STRA)

HSP 1 Score: 291 bits (746), Expect = 4.580e-95
Identity = 143/195 (73.33%), Postives = 163/195 (83.59%), Query Frame = 1 
Query:    1 REYTAEIMFETFGVPGLYIAVQAVLALAASWSAKSVAERTLTGTVIDAGDGVTHIIPVAEGYVIGSCIKHIPLAGRDITQFIMEMLRDRKEPIPPEDLLDAARRIKEQHCYCAPDLAKEYSKYDKDPRKFFRMYTGKRKSGVE-YSADVGYERFLGPXXXXXXEIVSSDFLTPLPQVVDEAILKCPIDSRRGLYK 582
            RE TAEIMFETF VPGLYIAVQAVLALAASW++K+V ERTLTGTVID+GDGVTH+IPVAEGYVIGSCIKHIPLAGRDIT F+  +LR+R EP+P ED L+ A+RIKE H Y  PDLAKE++KYD DP K+FR Y G+ K   + + ADVGYERFLGP      EI SSDFLTPLP VVDE+I+KCPID+RRGLYK
Sbjct:  118 RELTAEIMFETFNVPGLYIAVQAVLALAASWTSKNVKERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPLAGRDITAFVHRLLRERGEPVPAEDALEVAKRIKEMHSYVCPDLAKEFAKYDSDPAKYFRTYEGQHKRTKQPWVADVGYERFLGPEIFFNPEIFSSDFLTPLPDVVDESIVKCPIDTRRGLYK 312
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BLAST of mRNA_E-fasciculatus_F_contig13243.2448.1 vs. uniprot
Match: F0Y566_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y566_AURAN)

HSP 1 Score: 290 bits (743), Expect = 1.300e-94
Identity = 147/195 (75.38%), Postives = 169/195 (86.67%), Query Frame = 1 
Query:    1 REYTAEIMFETFGVPGLYIAVQAVLALAASWSAKSVAERTLTGTVIDAGDGVTHIIPVAEGYVIGSCIKHIPLAGRDITQFIMEMLRDRKEPIPPEDLLDAARRIKEQHCYCAPDLAKEYSKYDKDPRKFFRMYTG-KRKSGVEYSADVGYERFLGPXXXXXXEIVSSDFLTPLPQVVDEAILKCPIDSRRGLYK 582
            RE TAEIMFETF VPGLYIAVQAVLALAASW+ K+V ERTLTGTVID+GDGVTH+IPVAEGYVIGSCIKHIPLAGRDIT F+ ++LR+R EPIP ED L+ A+R+KE H Y  PDLAKE++KYD DP K+FR Y G K+++G ++S DVGYERFLG XXXXXX   SSDF+TPLP VVDEAI+KCPID+RRGLYK
Sbjct:  118 RELTAEIMFETFNVPGLYIAVQAVLALAASWTKKNVKERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPLAGRDITAFVHKLLRERSEPIPSEDSLEVAKRVKEMHSYVCPDLAKEFAKYDADPAKYFRTYEGAKKQTGAKWSCDVGYERFLGXXXXXXXXXXSSDFITPLPDVVDEAIIKCPIDTRRGLYK 312
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BLAST of mRNA_E-fasciculatus_F_contig13243.2448.1 vs. uniprot
Match: A0A6S8BJF3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8BJF3_9STRA)

HSP 1 Score: 286 bits (733), Expect = 4.220e-93
Identity = 144/195 (73.85%), Postives = 164/195 (84.10%), Query Frame = 1 
Query:    1 REYTAEIMFETFGVPGLYIAVQAVLALAASWSAKSVAERTLTGTVIDAGDGVTHIIPVAEGYVIGSCIKHIPLAGRDITQFIMEMLRDRKEPIPPEDLLDAARRIKEQHCYCAPDLAKEYSKYDKDPRKFFRMYTGK-RKSGVEYSADVGYERFLGPXXXXXXEIVSSDFLTPLPQVVDEAILKCPIDSRRGLYK 582
            RE TAEIMFETF VPGLYIAVQAVLALAASW++KSV ERTLTGTVID+GDGVTH+IPVAEGYVIGSCIKHIPLAGRDIT F+ ++LR+R EPIP ED L+ A+RIKE H Y  PDLAKE+ KYD  P K+FR Y GK +K+   ++ D+GYERFLGP  XXXX   SSDF+ PLP VVDEAI+KCPID+RRGLYK
Sbjct:  118 REATAEIMFETFNVPGLYIAVQAVLALAASWTSKSVTERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPLAGRDITAFVHKLLRERMEPIPSEDSLEVAKRIKEMHSYVCPDLAKEFVKYDTAPEKYFRQYQGKHKKTNAPWTCDIGYERFLGPEIXXXXXXFSSDFIIPLPDVVDEAIIKCPIDTRRGLYK 312
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BLAST of mRNA_E-fasciculatus_F_contig13243.2448.1 vs. uniprot
Match: A0A2R5G1L9_9STRA (Actin, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G1L9_9STRA)

HSP 1 Score: 280 bits (716), Expect = 1.810e-90
Identity = 132/195 (67.69%), Postives = 160/195 (82.05%), Query Frame = 1 
Query:    1 REYTAEIMFETFGVPGLYIAVQAVLALAASWSAKSVAERTLTGTVIDAGDGVTHIIPVAEGYVIGSCIKHIPLAGRDITQFIMEMLRDRKEPIPPEDLLDAARRIKEQHCYCAPDLAKEYSKYDKDPRKFFRMYTG-KRKSGVEYSADVGYERFLGPXXXXXXEIVSSDFLTPLPQVVDEAILKCPIDSRRGLYK 582
            REYTAE+MFETF VPGLYIAVQA+LALAASW++K + ERTLTGTVID+GDGVTH+IPVA+GYVIGS IKHIPLAGRD+T FI  MLRDRKEPIPPED+L AA+ +KE+HCY  PDL +E++KYD DP K+F+++ G   ++G  +  DVGYERFL P      EI +  F TPLP VVD++IL CPID+RRGLY+
Sbjct:  124 REYTAEVMFETFNVPGLYIAVQAILALAASWTSKKLEERTLTGTVIDSGDGVTHVIPVADGYVIGSSIKHIPLAGRDVTNFIAGMLRDRKEPIPPEDILLAAKSLKERHCYTCPDLVREFTKYDNDPEKYFKLFQGIHSRTGKAWECDVGYERFLAPEIFFSPEIFNPQFSTPLPSVVDKSILSCPIDTRRGLYR 318
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BLAST of mRNA_E-fasciculatus_F_contig13243.2448.1 vs. uniprot
Match: ARP3_ACACA (Actin-related protein 3 n=2 Tax=Acanthamoeba castellanii TaxID=5755 RepID=ARP3_ACACA)

HSP 1 Score: 272 bits (695), Expect = 3.190e-87
Identity = 136/195 (69.74%), Postives = 158/195 (81.03%), Query Frame = 1 
Query:    1 REYTAEIMFETFGVPGLYIAVQAVLALAASWSAKSVAERTLTGTVIDAGDGVTHIIPVAEGYVIGSCIKHIPLAGRDITQFIMEMLRDRKEPIPPEDLLDAARRIKEQHCYCAPDLAKEYSKYDKDPRKFFRMYTGKRKSGVE-YSADVGYERFLGPXXXXXXEIVSSDFLTPLPQVVDEAILKCPIDSRRGLYK 582
            REYTAEIMFETF VPGLYIAVQAVLALAASW++K V E+TLTGTVID+GDGVTH+IPVAEGYVIGS IKHIPLAGRDIT F++++LR+R E IPP + L+ A+RIKE   Y  PD+ KE+ KYD +P K+F+ Y G    G + Y+ DVGYERFLGP   XXX   SSDFLTPLP+VVDE I  CPID+RRGLYK
Sbjct:  131 REYTAEIMFETFNVPGLYIAVQAVLALAASWTSKQVTEKTLTGTVIDSGDGVTHVIPVAEGYVIGSSIKHIPLAGRDITNFVLQLLRERNEKIPPAETLEVAKRIKETFSYVCPDIVKEFKKYDTEPDKWFKTYEGIESVGKKPYNVDVGYERFLGPEIFXXXXXFSSDFLTPLPKVVDETIQSCPIDTRRGLYK 325
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BLAST of mRNA_E-fasciculatus_F_contig13243.2448.1 vs. uniprot
Match: F4PRV3_CAVFA (Actin-like protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PRV3_CAVFA)

HSP 1 Score: 269 bits (688), Expect = 2.790e-86
Identity = 131/195 (67.18%), Postives = 159/195 (81.54%), Query Frame = 1 
Query:    1 REYTAEIMFETFGVPGLYIAVQAVLALAASWSAKSVAERTLTGTVIDAGDGVTHIIPVAEGYVIGSCIKHIPLAGRDITQFIMEMLRDRKEPIPPEDLLDAARRIKEQHCYCAPDLAKEYSKYDKDPRKFFR-MYTGKRKSGVEYSADVGYERFLGPXXXXXXEIVSSDFLTPLPQVVDEAILKCPIDSRRGLYK 582
            RE+TAEIMFETF VPGLYIAVQAVLALAASW++K+V ERTLTGTV+D+GDGVTHIIPV+EGYVIGS IKHIP+AGRDIT F+ +++R+R+  IPP + L+ A+R+KEQ+ Y  PDL KE++KYD DP K+F+ + T    S   YS DVGYERFLGP      EI+SSDFLTPLP+VVD+ +  CPID RRGLYK
Sbjct:  123 REFTAEIMFETFNVPGLYIAVQAVLALAASWTSKNVTERTLTGTVVDSGDGVTHIIPVSEGYVIGSSIKHIPIAGRDITGFVQQIMREREPTIPPAESLEIAKRVKEQYSYVCPDLVKEFTKYDSDPSKWFKTINTQDAVSKRPYSYDVGYERFLGPEIFFNPEIISSDFLTPLPKVVDDTVQSCPIDCRRGLYK 317
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13243.2448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHZ3_ECTSI6.390e-12996.39Actin-related protein 2/3 complex subunit 3 n=2 Ta... [more]
A0A835YZY0_9STRA4.150e-10277.84Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7S1XPQ5_9STRA4.830e-9772.31Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UAQ1_9STRA8.800e-9672.82Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8J2SER0_9STRA4.580e-9573.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y566_AURAN1.300e-9475.38Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6S8BJF3_9STRA4.220e-9373.85Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A2R5G1L9_9STRA1.810e-9067.69Actin, putative n=1 Tax=Hondaea fermentalgiana Tax... [more]
ARP3_ACACA3.190e-8769.74Actin-related protein 3 n=2 Tax=Acanthamoeba caste... [more]
F4PRV3_CAVFA2.790e-8667.18Actin-like protein n=1 Tax=Cavenderia fasciculata ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13243contigE-fasciculatus_F_contig13243:145..3454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.8
Seed ortholog evalue2.5e-98
Seed eggNOG ortholog2880.D8LHZ3
Preferred nameACTR3
KEGG koko:K14398,ko:K18584
KEGG Pathwayko03015,ko04138,ko04530,map03015,map04138,map04530
GOsGO:0000001,GO:0000003,GO:0000139,GO:0000166,GO:0000278,GO:0000280,GO:0000281,GO:0000768,GO:0000902,GO:0000904,GO:0000910,GO:0000912,GO:0000915,GO:0001558,GO:0001667,GO:0001700,GO:0001726,GO:0001891,GO:0002009,GO:0002064,GO:0002065,GO:0002066,GO:0002102,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0003674,GO:0003779,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0005829,GO:0005856,GO:0005884,GO:0005885,GO:0005886,GO:0005903,GO:0005911,GO:0005912,GO:0005913,GO:0005938,GO:0006810,GO:0006886,GO:0006887,GO:0006897,GO:0006909,GO:0006928,GO:0006949,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007005,GO:0007009,GO:0007010,GO:0007015,GO:0007017,GO:0007018,GO:0007049,GO:0007059,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007369,GO:0007399,GO:0007413,GO:0007417,GO:0007423,GO:0007520,GO:0008037,GO:0008038,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008154,GO:0008356,GO:0008361,GO:0008582,GO:0008593,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009825,GO:0009888,GO:0009966,GO:0009967,GO:0009987,GO:0010001,GO:0010026,GO:0010033,GO:0010035,GO:0010038,GO:0010090,GO:0010243,GO:0010256,GO:0010591,GO:0010592,GO:0010631,GO:0010638,GO:0010646,GO:0010647,GO:0010720,GO:0010721,GO:0010762,GO:0010763,GO:0010769,GO:0010770,GO:0010771,GO:0010975,GO:0010976,GO:0010977,GO:0012505,GO:0012506,GO:0014013,GO:0014015,GO:0014070,GO:0014902,GO:0015031,GO:0015629,GO:0015833,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016331,GO:0016344,GO:0016477,GO:0017076,GO:0019899,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022416,GO:0022603,GO:0022604,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030027,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030037,GO:0030041,GO:0030054,GO:0030055,GO:0030056,GO:0030139,GO:0030154,GO:0030175,GO:0030182,GO:0030308,GO:0030334,GO:0030335,GO:0030479,GO:0030516,GO:0030517,GO:0030554,GO:0030588,GO:0030589,GO:0030659,GO:0030666,GO:0030670,GO:0030707,GO:0030713,GO:0030832,GO:0030833,GO:0030838,GO:0030855,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031143,GO:0031175,GO:0031252,GO:0031334,GO:0031344,GO:0031345,GO:0031346,GO:0031410,GO:0031532,GO:0031982,GO:0031984,GO:0032092,GO:0032153,GO:0032195,GO:0032271,GO:0032273,GO:0032355,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0032940,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033206,GO:0033993,GO:0034097,GO:0034314,GO:0034341,GO:0034612,GO:0034613,GO:0034622,GO:0035639,GO:0035983,GO:0035984,GO:0036094,GO:0036284,GO:0038093,GO:0038094,GO:0038096,GO:0040007,GO:0040008,GO:0040011,GO:0040012,GO:0040017,GO:0042063,GO:0042221,GO:0042493,GO:0042692,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043393,GO:0043519,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044396,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0044837,GO:0045010,GO:0045087,GO:0045132,GO:0045184,GO:0045202,GO:0045335,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045666,GO:0045685,GO:0045687,GO:0045747,GO:0045887,GO:0045926,GO:0045927,GO:0046677,GO:0046683,GO:0046689,GO:0046903,GO:0046907,GO:0048013,GO:0048232,GO:0048285,GO:0048308,GO:0048311,GO:0048468,GO:0048471,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048638,GO:0048639,GO:0048640,GO:0048646,GO:0048666,GO:0048699,GO:0048708,GO:0048710,GO:0048711,GO:0048729,GO:0048731,GO:0048771,GO:0048814,GO:0048856,GO:0048869,GO:0048870,GO:0050000,GO:0050767,GO:0050768,GO:0050769,GO:0050770,GO:0050771,GO:0050773,GO:0050775,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050896,GO:0051049,GO:0051050,GO:0051093,GO:0051094,GO:0051098,GO:0051099,GO:0051117,GO:0051128,GO:0051129,GO:0051130,GO:0051146,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051258,GO:0051270,GO:0051272,GO:0051285,GO:0051286,GO:0051301,GO:0051303,GO:0051305,GO:0051321,GO:0051489,GO:0051491,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051653,GO:0051656,GO:0051666,GO:0051674,GO:0051704,GO:0051716,GO:0051960,GO:0051961,GO:0051962,GO:0051963,GO:0051965,GO:0060076,GO:0060187,GO:0060271,GO:0060284,GO:0060341,GO:0060429,GO:0060491,GO:0060998,GO:0060999,GO:0061001,GO:0061003,GO:0061024,GO:0061061,GO:0061387,GO:0061476,GO:0061564,GO:0061640,GO:0061645,GO:0061825,GO:0061827,GO:0061828,GO:0061830,GO:0061831,GO:0061832,GO:0061843,GO:0061851,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070161,GO:0070201,GO:0070358,GO:0070555,GO:0070727,GO:0070848,GO:0070849,GO:0070887,GO:0070925,GO:0071236,GO:0071310,GO:0071345,GO:0071346,GO:0071347,GO:0071356,GO:0071363,GO:0071364,GO:0071396,GO:0071407,GO:0071417,GO:0071495,GO:0071503,GO:0071559,GO:0071560,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072553,GO:0090066,GO:0090087,GO:0090130,GO:0090132,GO:0090313,GO:0090314,GO:0090316,GO:0090527,GO:0090558,GO:0090626,GO:0097159,GO:0097203,GO:0097223,GO:0097320,GO:0097367,GO:0097435,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0098813,GO:0098858,GO:0098862,GO:0099080,GO:0099081,GO:0099172,GO:0099175,GO:0099512,GO:0099513,GO:0099568,GO:0099738,GO:0106030,GO:0110053,GO:0120025,GO:0120031,GO:0120032,GO:0120033,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0140013,GO:1900006,GO:1901265,GO:1901363,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902407,GO:1902410,GO:1902743,GO:1902745,GO:1902903,GO:1902905,GO:1903046,GO:1903047,GO:1903076,GO:1903078,GO:1903475,GO:1903533,GO:1903827,GO:1903829,GO:1904170,GO:1904171,GO:1904375,GO:1904377,GO:1904396,GO:1904398,GO:1904951,GO:1905475,GO:1905477,GO:1905834,GO:1905835,GO:1905836,GO:1905837,GO:2000026,GO:2000145,GO:2000147,GO:2000249,GO:2000251
EggNOG free text desc.cytoskeleton organization
EggNOG OGsCOG5277@1,KOG0678@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04131,ko04147,ko04812
Hectar predicted targeting categorysignal peptide
Exons5
Model size600
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13243.2448.1prot_E-fasciculatus_F_contig13243.2448.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13243 145..3433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927828.0784428-CDS-E-fasciculatus_F_contig13243:144..3301622927828.0784428-CDS-E-fasciculatus_F_contig13243:144..330Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13243 145..330 -
1695995712.007289-CDS-E-fasciculatus_F_contig13243:144..3301695995712.007289-CDS-E-fasciculatus_F_contig13243:144..330Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13243 145..330 -
1622927828.091197-CDS-E-fasciculatus_F_contig13243:1009..11151622927828.091197-CDS-E-fasciculatus_F_contig13243:1009..1115Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13243 1010..1115 -
1695995712.0212715-CDS-E-fasciculatus_F_contig13243:1009..11151695995712.0212715-CDS-E-fasciculatus_F_contig13243:1009..1115Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13243 1010..1115 -
1622927828.1043408-CDS-E-fasciculatus_F_contig13243:1720..18011622927828.1043408-CDS-E-fasciculatus_F_contig13243:1720..1801Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13243 1721..1801 -
1695995712.03039-CDS-E-fasciculatus_F_contig13243:1720..18011695995712.03039-CDS-E-fasciculatus_F_contig13243:1720..1801Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13243 1721..1801 -
1622927828.1175115-CDS-E-fasciculatus_F_contig13243:2788..29101622927828.1175115-CDS-E-fasciculatus_F_contig13243:2788..2910Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13243 2789..2910 -
1695995712.0390654-CDS-E-fasciculatus_F_contig13243:2788..29101695995712.0390654-CDS-E-fasciculatus_F_contig13243:2788..2910Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13243 2789..2910 -
1622927828.1650584-CDS-E-fasciculatus_F_contig13243:3349..34331622927828.1650584-CDS-E-fasciculatus_F_contig13243:3349..3433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13243 3350..3433 -
1695995712.0500195-CDS-E-fasciculatus_F_contig13243:3349..34331695995712.0500195-CDS-E-fasciculatus_F_contig13243:3349..3433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13243 3350..3433 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927828.1863465-UTR-E-fasciculatus_F_contig13243:3433..34541622927828.1863465-UTR-E-fasciculatus_F_contig13243:3433..3454Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13243 3434..3454 -
1695995712.060287-UTR-E-fasciculatus_F_contig13243:3433..34541695995712.060287-UTR-E-fasciculatus_F_contig13243:3433..3454Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13243 3434..3454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13243.2448.1

>prot_E-fasciculatus_F_contig13243.2448.1 ID=prot_E-fasciculatus_F_contig13243.2448.1|Name=mRNA_E-fasciculatus_F_contig13243.2448.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=193bp
MFETFGVPGLYIAVQAVLALAASWSAKSVAERTLTGTVIDAGDGVTHIIP
VAEGYVIGSCIKHIPLAGRDITQFIMEMLRDRKEPIPPEDLLDAARRIKE
QHCYCAPDLAKEYSKYDKDPRKFFRMYTGKRKSGVEYSADVGYERFLGPE
MFFSPEIVSSDFLTPLPQVVDEAILKCPIDSRRGLYKVMWIG*
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mRNA from alignment at E-fasciculatus_F_contig13243:145..3454-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13243.2448.1 ID=mRNA_E-fasciculatus_F_contig13243.2448.1|Name=mRNA_E-fasciculatus_F_contig13243.2448.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3310bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13243:145..3454- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGAGTACACCGCGGAGATTATGTTCGAGACCTTCGGGGTACCTGGCCT
GTACATCGCGGTTCAGGCAGTCTTGGCACTAGCGGCCTCTTGGAGCGCGA
AATCGGTGAGCCGCCGCCGCACACCATTTATTGTTTTGTCTCCTTTGTCT
ATCTTGTGCCGCGTTGTTCACCAGGCCATGGGACTGATCCTCGCTCTTGA
GCCACGTACAGTATGCGGGGAGACTATGGCTGTAGTTTTCTTGTTGGTTT
CGTTTCTCTGCTTCGGCGATAACCCGTACACAGCAAAATGCACGGTCATG
GCAGCAGCCACGACCATGACGACAACAACGTAGGATGAAAACAACGACAC
CGATAGCAGCAACAACAATATGAACAAACAAGTCCAAGGTCTCAGCCGCA
GCAGCAGTCGCAACATCAACAACGCAACCGTAGATGGCATCTTTTTTTTT
TCTCGTGCCTCCCCTGCTGTGACTGGCCGAGCGTACCTCGACGTTGGATA
GCATTTTTTTTTTTTTCGTGCTCCGCTGCTGCTGTGGCTGACAGGTAGCC
GAGCGCACCCTCACGGGCACGGTAATCGACGCCGGTGACGGTGTGACGCA
CATCATCCCCGTAGCAGAGGGATACGTGATCGGCAGCTGCATCAAGCACA
TCCCGCTCGCTGGAAGGTGTGTGTCGGCCGTCCGTTCGTTACACGGCCGG
TAGCCTTCGCGTTTTTTTTTTTTTTGTATTCAGGGAGTANNNNNNNNNNC
ATACAATCGGGGAAGTCGGCGTTAGGGTTAGGGTTAGGGAATACAGTCTG
CGTACCCCCCTTCCTGTTCTATTTCCTCATAGAAGTAGTACTTGATTTTT
TATTTGCCGCGAAGGCGGTCCTGCACGGCGCGATAGGGCAGGGTGGGTTG
GACGTGCTCGTGTGGAGGGTGGCCTGTTCCCGCATGCGCCGTGTGGGAAA
CAGGTCTGTGTAGGCCCTCTATAAGGAAGGCGGGTATGCACCTTATAGAA
CGATGCACCCGCCCTACATGGGGCAGCCGCCTTATTCAATGTGTAGAACA
AATTGATTAGGGATTCCGCCTGTGCCAGCCAATTTTACCCGTCTTACACA
CATATATATATATAGAGTATAGAGGCCACCCGCCTTCTATGAAAAGGACC
TACGACTGTACTTTAACAGTACTCTTTTTCGTCCTGGCATATGCCATGGT
GATTATCGTTTTGGTCGGTGCTGCTTTTTTCCTCGGGTGCGTTGGATGTG
TATAGTGTTCGCTTATAGAGAGTCTTGCCGCGCCACAATGTTAATACGAT
GTGCGGTCGTGTGAGTTGGTGTGTGTGCGTTTGGTTTTTCTGAACTTGGC
AACGACCGCGTTACACTGCTGACCCATGGAGATAACGTGAGTGAGTCTTC
TATTAGTGAATCAGGATAACGGGAGCACACAAGGATACGACGTGTACGCG
TTTTACGCTTTATTTAGTGGTATTGGCCGTATTTCGATTGCCCGATGGAT
TGTGTTTGTGTGTGTAGTAGCATTGATGCTCCACGCAGGTCCAGGTCCTT
GGGTTTTGTCCGCCGCTCGAATTGTGGGTAACTCTGTAGCAAGCAACCGA
CGCGTGTTGACGCTGCTAGTCTTTTGACCTTGCGTGTGTGCGAACAATCA
CAGGGATATCACTCAGTTCATCATGGAGATGCTGAGGGATCGGAAGGAGC
CTATCCCGCCGGAAGACTTGCTTGATGCCGCCAGGTACCGCATAGTCTAC
AACATGAAACGATATTGGCCCGTACAAGTAGGCCAGACAACCTCCTCGAA
CACTCCAAGCCCCTGAGGCCCGTCCATCGAAAAAGGATGCAAGCTTATCG
AACCAAGTGTAGTCCAGGCAACCTTCTCGACCACTCCCAGCCCCTACTGT
AAGCACGTTTTTGGAAGCAGCACGTAAGCTTCTCGAAACCAAGTTCGTCA
CACGTGAAGGGTCAGCAAGCGTCACACGTGAAGGGTCAGCAAGCGTCACA
CGTGAAGGGTCAGCAAGCGTTCTCGGCGAGATGACCCCCCTCAACACCAA
GGAACCTTGTCGGACCAGTCAATATATTTTTCAGCACCATCATGTATCCC
TGCGAGATGCTTGCTGCCATTGCACGACGGCGCTGCATGGAAACCGAACC
CCAACCGCTCCATCCTCTGCCTACCAAATGGGAGTGTGCGATGGAGCACC
CCCTGTTTGGAGGTCGAGTTCTTGTTTTCGGATCTTGGGTTCGTCCTTTC
AATTGAAATGCGGGGCGTCATCGCAAAATGTGCGTGTATCACGGGTAATT
CAAACAGTTTTTGCTCCTTTCGTGATGTCTTAACGAAAGGCGTATCAAGG
AGCAGCACTGCTACTGTGCGCCGGACCTGGCGAAGGAGTACTCCAAGTAC
GACAAGGACCCCAGAAAGTTTTTCCGCATGTACACCGGCAAACGGGTAAG
ATGAAGGATGTGTAAGAATCATGAGTTGATGCCGGTACATTGGGATACAA
TTTTTTATGGTGTCTATTTTGTTGTGGGTATTTTTTAATTTTCGGTTTTG
GGGAGACAATATAGCTCGCGTGAGAGCTTCTTCAACGAGTAAGAGAGTGC
ACGATCGGTGTAACAACGGGCCTATGAATCAATTCCACCGCCGATGTACG
TGTTGAATGCATGACTGACTGCCAGTGCACCCAGCCGAGTACATTGTAGG
TGGTGCCGGCTTGCCTTTTGGCCTTGTCCAGAGCTACAGCAGTGCATGGA
AGTGCTCTGGGAAACAAGCGCGAGAGCTCCCCATGATTGGTGCAACGCCA
TTCACTGCCTGTTCCCTGCTTTTTGTTCACCGTCTTGCGGGGATAAGCTA
GCTGGTGCGTGTTTTGTGTGCGGTGACCTTGTTAATTTTCCCTGAATGCA
CACAAATTGGAGCCACGTGCTGAATGTCCTCCTTGTACTACTGCACGGGG
ATAAGCCTTCTGTGTCGTGTAGGGCCACATTAACCTGTTGATGTACAATT
TTTTCAGCCACTCGCTGCTGCTATTCCTTCCCTTCCTGGCAAAGCTGCCA
TTCTTTGATAGCAGCGCACGCTGGCTTGACGCCCACCGCTGTACCCGCCA
ATGCTACGCCCCTTGCGAGCGCAGAAAAGCGGGGTGGAATACTCGGCAGA
CGTGGGCTACGAGAGGTTCCTCGGTCCGGAAATGTTCTTCTCTCCGGAGA
TCGTGTCGTCGGACTTCTTGACGCCGCTGCCGCAGGTGGTGGACGAGGCC
ATCCTCAAGTGTCCCATCGACTCGCGCAGAGGCCTCTACAAGGTGATGTG
GATTGGCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13243:145..3454-

>mRNA_E-fasciculatus_F_contig13243.2448.1 ID=mRNA_E-fasciculatus_F_contig13243.2448.1|Name=mRNA_E-fasciculatus_F_contig13243.2448.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1158bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13243:145..3454- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCGAGACCTTCGGGGTACCTGGCCTGTACATCGCGGTTCAGGCAGT
CTTGGCACTAGCGGCCTCTTGGAGCGCGAAATCGATGTTCGAGACCTTCG
GGGTACCTGGCCTGTACATCGCGGTTCAGGCAGTCTTGGCACTAGCGGCC
TCTTGGAGCGCGAAATCGGTAGCCGAGCGCACCCTCACGGGCACGGTAAT
CGACGCCGGTGACGGTGTGACGCACATCATCCCCGTAGCAGAGGGATACG
TGATCGGCAGCTGCATCAAGCACATCCCGCTCGCTGGAAGGTAGCCGAGC
GCACCCTCACGGGCACGGTAATCGACGCCGGTGACGGTGTGACGCACATC
ATCCCCGTAGCAGAGGGATACGTGATCGGCAGCTGCATCAAGCACATCCC
GCTCGCTGGAAGGGATATCACTCAGTTCATCATGGAGATGCTGAGGGATC
GGAAGGAGCCTATCCCGCCGGAAGACTTGCTTGATGCCGCCAGGGATATC
ACTCAGTTCATCATGGAGATGCTGAGGGATCGGAAGGAGCCTATCCCGCC
GGAAGACTTGCTTGATGCCGCCAGGCGTATCAAGGAGCAGCACTGCTACT
GTGCGCCGGACCTGGCGAAGGAGTACTCCAAGTACGACAAGGACCCCAGA
AAGTTTTTCCGCATGTACACCGGCAAACGGGCGTATCAAGGAGCAGCACT
GCTACTGTGCGCCGGACCTGGCGAAGGAGTACTCCAAGTACGACAAGGAC
CCCAGAAAGTTTTTCCGCATGTACACCGGCAAACGGAAAAGCGGGGTGGA
ATACTCGGCAGACGTGGGCTACGAGAGGTTCCTCGGTCCGGAAATGTTCT
TCTCTCCGGAGATCGTGTCGTCGGACTTCTTGACGCCGCTGCCGCAGGTG
GTGGACGAGGCCATCCTCAAGTGTCCCATCGACTCGCGCAGAGGCCTCTA
CAAGGTGATGTGGATTGGCTGAAAAAGCGGGGTGGAATACTCGGCAGACG
TGGGCTACGAGAGGTTCCTCGGTCCGGAAATGTTCTTCTCTCCGGAGATC
GTGTCGTCGGACTTCTTGACGCCGCTGCCGCAGGTGGTGGACGAGGCCAT
CCTCAAGTGTCCCATCGACTCGCGCAGAGGCCTCTACAAGGTGATGTGGA
TTGGCTGA
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