mRNA_E-fasciculatus_F_contig13220.2432.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13220.2432.1
Unique NamemRNA_E-fasciculatus_F_contig13220.2432.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13220.2432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13220contigE-fasciculatus_F_contig13220:1782..3518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1379
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13220.2432.1prot_E-fasciculatus_F_contig13220.2432.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13220 1782..2805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927825.906152-CDS-E-fasciculatus_F_contig13220:1781..22851622927825.906152-CDS-E-fasciculatus_F_contig13220:1781..2285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13220 1782..2285 -
1695995711.191078-CDS-E-fasciculatus_F_contig13220:1781..22851695995711.191078-CDS-E-fasciculatus_F_contig13220:1781..2285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13220 1782..2285 -
1622927825.9174874-CDS-E-fasciculatus_F_contig13220:2643..28051622927825.9174874-CDS-E-fasciculatus_F_contig13220:2643..2805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13220 2644..2805 -
1695995711.2071729-CDS-E-fasciculatus_F_contig13220:2643..28051695995711.2071729-CDS-E-fasciculatus_F_contig13220:2643..2805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13220 2644..2805 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927825.9268088-UTR-E-fasciculatus_F_contig13220:2805..35181622927825.9268088-UTR-E-fasciculatus_F_contig13220:2805..3518Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13220 2806..3518 -
1695995711.221132-UTR-E-fasciculatus_F_contig13220:2805..35181695995711.221132-UTR-E-fasciculatus_F_contig13220:2805..3518Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13220 2806..3518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13220.2432.1

>prot_E-fasciculatus_F_contig13220.2432.1 ID=prot_E-fasciculatus_F_contig13220.2432.1|Name=mRNA_E-fasciculatus_F_contig13220.2432.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=222bp
MTFAASSFATPTCLVHCQAQATLGDARAALREPLPPLLFVKDAMAGRHTP
ATPPDGTRAPEPFVDPAMVVGFGRENHQKNTSKFVYRGGFRLLIQELKPP
PSIESLGAFLGEVGSTIAMGRIHVINNGVSDYEADPSRDHSNSGGDGGGS
RTRLRGRGGSRRAVEQDPGLFISSSRMRVGSGNDRRLGGGTQGIKMPRSQ
TAHATLGRAHTLYSTGVRGGA*
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mRNA from alignment at E-fasciculatus_F_contig13220:1782..3518-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13220.2432.1 ID=mRNA_E-fasciculatus_F_contig13220.2432.1|Name=mRNA_E-fasciculatus_F_contig13220.2432.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1737bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13220:1782..3518- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTCGTTTTAGCCACAGCCACTATATCTTAATAACCACGCTGTATGTTTG
CCTGTCTACCTACCTGTTAGGTGTGCTCAGTACGAGATACGGATCTAAGG
GGATCTAGGGGGTTTCGTGTATCATGTGTTGGTATTTGTTTGGTAGAAGG
GCGTTCTCCTTCCTACTACATGAGCAGGCGTGTCCTGCTCACTCGTTAAT
ACCCAAGGTCTTGAGTCAACCTTTCTCCGCAGCCTCCGACGCAAAACACC
CGCTACCCAACACTACCCTCGCATCACATGCCAGCTGCTTTGGAGCCCCA
GCTGAGAGGAAAGAGGTACAGCGACTGCTGCGACAGTGCTGTTGTCTCAA
CATATAGACTAGTGGTTTGAGGAAGCCTATCACTACAGTAGTAGCTCACG
AATTGATACCATTGCTTCGATCTCTCCTCCCGTTACACCACGAGTAGGCC
GTCGCGGTCAAGTACCGAAGCGTGGACGTCGGCAACATCCTCTCCGGAAA
GGTCAAGCATGATCTCATCTGCATCGTGTGCGACTGTCGACCATTGGGTG
TAGCAGCTCAGATAAGAACAGGACTTTTGACTGGCCTGCGTCTCGTTTTC
CATGTCAAGACAACCCCTGGACAACAACAACCCCTTGACGAGAATTTGAT
TCCGTTCTGCTATTACGCGCGGAAAGTGAAACGTGAGAAGGGATCAATGA
TGCGCCGAGAGAAATGACATTTGCTGCCTCCTCTTTCGCAACCCCCACAT
GCCTGGTCCATTGTCAAGCACAGGCTACTCTTGGCGACGCACGAGCAGCC
TTACGAGAACCCCTACCACCACTGCTTTTCGTAAAGGATGCCATGGCGGG
CCGACACACGCCAGCCACACCACCGGCAACTGCGTTTCTGTTGCGTCGCT
CAACGTTACATGCTGTCCTATGGCGGCTTAGCTCCTCCTGCATTCTGAGA
AACGACTATGATTAAGACCGAACACTTTGTTGAATGCGTGACGGCGGGCG
TGGTCTTCGATTGAGTTGATATGGAACAGCGTGGTGTCGTTCTCCCGACA
CAATTAAGTATCCACTGGAGGTAGTTGTACAAATGTATTTGCCACCGAGC
GGACATAATAGGGTCACAACTCCGCAACACTCCGACATTTTTTGTCGAAA
CAATACAAACCTCGCGAAATGCAACAGAATTTGCACGCGTCGACTTTTTC
CCGCGGTGTGTGTACTCTCGCCTTGGACACAAGGATGGGACGCGTGCCCC
GGAACCATTCGTAGACCCTGCAATGGTGGTAGGCTTTGGGAGAGAGAATC
ATCAGAAAAACACCAGCAAGTTTGTTTACCGAGGAGGCTTCAGACTCCTT
ATTCAGGAGCTCAAGCCACCGCCTAGTATCGAAAGCCTGGGAGCCTTTCT
GGGGGAAGTTGGCAGCACGATTGCAATGGGCAGGATTCACGTCATCAACA
ACGGCGTGTCTGATTATGAGGCTGATCCCTCTCGAGATCACAGCAACAGC
GGTGGGGATGGGGGCGGTAGTAGAACTAGACTCAGAGGTCGCGGGGGCAG
TAGGCGAGCGGTCGAACAAGATCCTGGCTTGTTTATCAGTAGTTCGAGGA
TGAGGGTAGGGAGTGGCAACGATCGAAGATTGGGCGGCGGGACACAGGGC
ATCAAGATGCCGAGATCGCAGACTGCTCACGCAACTCTGGGGCGGGCGCA
TACTCTATACTCCACTGGCGTGAGAGGAGGTGCGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13220:1782..3518-

>mRNA_E-fasciculatus_F_contig13220.2432.1 ID=mRNA_E-fasciculatus_F_contig13220.2432.1|Name=mRNA_E-fasciculatus_F_contig13220.2432.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1332bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13220:1782..3518- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACATTTGCTGCCTCCTCTTTCGCAACCCCCACATGCCTGGTCCATTG
TCAAGCACAGGCTACTCTTGGCGACGCACGAGCAGCCTTACGAGAACCCC
TACCACCACTGCTTTTCGTAAAGGATGCCATGGCGGGCCGACACACGCCA
GCCACACCACCGATGACATTTGCTGCCTCCTCTTTCGCAACCCCCACATG
CCTGGTCCATTGTCAAGCACAGGCTACTCTTGGCGACGCACGAGCAGCCT
TACGAGAACCCCTACCACCACTGCTTTTCGTAAAGGATGCCATGGCGGGC
CGACACACGCCAGCCACACCACCGGATGGGACGCGTGCCCCGGAACCATT
CGTAGACCCTGCAATGGTGGTAGGCTTTGGGAGAGAGAATCATCAGAAAA
ACACCAGCAAGTTTGTTTACCGAGGAGGCTTCAGACTCCTTATTCAGGAG
CTCAAGCCACCGCCTAGTATCGAAAGCCTGGGAGCCTTTCTGGGGGAAGT
TGGCAGCACGATTGCAATGGGCAGGATTCACGTCATCAACAACGGCGTGT
CTGATTATGAGGCTGATCCCTCTCGAGATCACAGCAACAGCGGTGGGGAT
GGGGGCGGTAGTAGAACTAGACTCAGAGGTCGCGGGGGCAGTAGGCGAGC
GGTCGAACAAGATCCTGGCTTGTTTATCAGTAGTTCGAGGATGAGGGTAG
GGAGTGGCAACGATCGAAGATTGGGCGGCGGGACACAGGGCATCAAGATG
CCGAGATCGCAGACTGCTCACGCAACTCTGGGGCGGGCGCATACTCTATA
CTCCACTGGCGTGAGAGGAGGTGCGTAAGATGGGACGCGTGCCCCGGAAC
CATTCGTAGACCCTGCAATGGTGGTAGGCTTTGGGAGAGAGAATCATCAG
AAAAACACCAGCAAGTTTGTTTACCGAGGAGGCTTCAGACTCCTTATTCA
GGAGCTCAAGCCACCGCCTAGTATCGAAAGCCTGGGAGCCTTTCTGGGGG
AAGTTGGCAGCACGATTGCAATGGGCAGGATTCACGTCATCAACAACGGC
GTGTCTGATTATGAGGCTGATCCCTCTCGAGATCACAGCAACAGCGGTGG
GGATGGGGGCGGTAGTAGAACTAGACTCAGAGGTCGCGGGGGCAGTAGGC
GAGCGGTCGAACAAGATCCTGGCTTGTTTATCAGTAGTTCGAGGATGAGG
GTAGGGAGTGGCAACGATCGAAGATTGGGCGGCGGGACACAGGGCATCAA
GATGCCGAGATCGCAGACTGCTCACGCAACTCTGGGGCGGGCGCATACTC
TATACTCCACTGGCGTGAGAGGAGGTGCGTAA
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