mRNA_E-fasciculatus_F_contig13218.2428.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13218.2428.1
Unique NamemRNA_E-fasciculatus_F_contig13218.2428.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13218.2428.1 vs. uniprot
Match: D8LMJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ8_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 4.030e-35
Identity = 118/153 (77.12%), Postives = 121/153 (79.08%), Query Frame = -1 
Query:   10 GGGSSQGEAASDFGTPSDQAGESCRPRKNGGDEGSXXXXXXXXXXXXXXXXXXXXXGAFPPASPAKALFASPARPRSG-MSVLSTSVLSVSRPGSPTAAXXXXXXXXXXXXXXXXXX---ERAAKQRISGDRTGL-SFWRWGGKPRTDDEGGS 453
            GGGS QGEAA+DFGT SDQAGESCRP K+GGDEG               XXXXXXX    PASPA  LFASPARPRSG MSVLSTSVL+VSRPGSPTAAXXXXXXXXXXXXXXXXXX   E AAKQRISGDRT L SFWRWGGKPRT DEGGS
Sbjct:   56 GGGSPQGEAAADFGTTSDQAGESCRP-KDGGDEGGGGDADASSTAGWAAXXXXXXXX---PASPATTLFASPARPRSGTMSVLSTSVLAVSRPGSPTAAXXXXXXXXXXXXXXXXXXXXXEGAAKQRISGDRTALLSFWRWGGKPRTGDEGGS 204
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BLAST of mRNA_E-fasciculatus_F_contig13218.2428.1 vs. uniprot
Match: A0A6H5KBU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU0_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.640e-30
Identity = 101/152 (66.45%), Postives = 106/152 (69.74%), Query Frame = -1 
Query:   19 GQACAGGGSSQGEAASDFGTPSDQAGESCRPRKNGGDEGSXXXXXXXXXXXXXXXXXXXXXGAFPPASPAKALFASPARPRSGMSVLSTSVLSVSRPGSPT--AAXXXXXXXXXXXXXXXXXXERAAKQRISGDRTGLSFWRWGGKPRTDDE 468
            GQAC GGGS QGEAA+DFGT  DQAGESCRP K+GGDEG               XXXXXXX      +    LFASPARPRS MSVLSTSVL+VSRPGSPT  AA         XXXXXXXXX   AKQRISGDRTGLSFWRWGGKPR+ DE
Sbjct:  318 GQAC-GGGSPQGEAAADFGTTGDQAGESCRP-KDGGDEGGGDADASSTAGWAAAXXXXXXXXXXXXTT----LFASPARPRSAMSVLSTSVLAVSRPGSPTLAAAPPALAGEGGXXXXXXXXXXXXAKQRISGDRTGLSFWRWGGKPRSGDE 463
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13218.2428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMJ8_ECTSI4.030e-3577.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBU0_9PHAE2.640e-3066.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13218contigE-fasciculatus_F_contig13218:71..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927825.4896593-CDS-E-fasciculatus_F_contig13218:70..5381622927825.4896593-CDS-E-fasciculatus_F_contig13218:70..538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13218 71..538 +
1695995711.0020602-CDS-E-fasciculatus_F_contig13218:70..5381695995711.0020602-CDS-E-fasciculatus_F_contig13218:70..538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13218 71..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13218.2428.1prot_E-fasciculatus_F_contig13218.2428.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13218 71..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13218.2428.1

>prot_E-fasciculatus_F_contig13218.2428.1 ID=prot_E-fasciculatus_F_contig13218.2428.1|Name=mRNA_E-fasciculatus_F_contig13218.2428.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=156bp
PSAATTLIVGAGLTPPAPERQPCSIATYSLLRCPFCRLLLRRPSFPRGRW
RCRCRRWRSRSRHRQHRGRQHRHARPRTRGRSKERLSRRRRGKSSRRRRR
RPPRCRGSIGVAIAVAAALVSAVLPWPTRLPSLIAWCTEVRRCFSLRGTS
AGARLP
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mRNA from alignment at E-fasciculatus_F_contig13218:71..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13218.2428.1 ID=mRNA_E-fasciculatus_F_contig13218.2428.1|Name=mRNA_E-fasciculatus_F_contig13218.2428.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=468bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13218:71..538+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCTCCGCCGCTACCACCCTCATCGTCGGTGCGGGGCTTACCCCCCCAGC
GCCAGAACGACAACCCTGTTCGATCGCCACTTATTCTCTGCTTCGCTGCC
CGTTCTGCCGCCTCCTCCTCCGCCGCCCCTCCTTCCCGCGCGGCCGCTGG
CGGTGCCGCTGCCGCCGTTGGCGATCCCGGTCGAGACACCGACAGCACCG
AGGTCGACAGCACCGACATGCCCGACCTCGGACGCGCGGGAGAAGCAAAG
AGCGCCTTAGCAGGAGACGCCGGGGGAAAAGCTCCCGCCGCCGCCGCCGC
CGCCCACCCCGCTGTCGAGGAAGCATCGGCGTCGCCATCGCCGTCGCCGC
TGCCCTCGTCTCCGCCGTTCTTCCTTGGCCGACAAGACTCCCCAGCCTGA
TCGCTTGGTGTACCGAAGTCCGACGCTGCTTCTCCCTGCGAGGAACCTCC
GCCGGCGCACGCCTGCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13218:71..538+

>mRNA_E-fasciculatus_F_contig13218.2428.1 ID=mRNA_E-fasciculatus_F_contig13218.2428.1|Name=mRNA_E-fasciculatus_F_contig13218.2428.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=936bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13218:71..538+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCTCCGCCGCTACCACCCTCATCGTCGGTGCGGGGCTTACCCCCCCAGC
GCCAGAACGACAACCCTGTTCGATCGCCACTTATTCTCTGCTTCGCTGCC
CGTTCTGCCGCCTCCTCCTCCGCCGCCCCTCCTTCCCGCGCGGCCGCTGG
CGGTGCCGCTGCCGCCGTTGGCGATCCCGGTCGAGACACCGACAGCACCG
AGGTCGACAGCACCGACATGCCCGACCTCGGACGCGCGGGAGAAGCAAAG
AGCGCCTTAGCAGGAGACGCCGGGGGAAAAGCTCCCGCCGCCGCCGCCGC
CGCCCACCCCGCTGTCGAGGAAGCATCGGCGTCGCCATCGCCGTCGCCGC
TGCCCTCGTCTCCGCCGTTCTTCCTTGGCCGACAAGACTCCCCAGCCTGA
TCGCTTGGTGTACCGAAGTCCGACGCTGCTTCTCCCTGCGAGGAACCTCC
GCCGGCGCACGCCTGCCCCCCTCCGCCGCTACCACCCTCATCGTCGGTGC
GGGGCTTACCCCCCCAGCGCCAGAACGACAACCCTGTTCGATCGCCACTT
ATTCTCTGCTTCGCTGCCCGTTCTGCCGCCTCCTCCTCCGCCGCCCCTCC
TTCCCGCGCGGCCGCTGGCGGTGCCGCTGCCGCCGTTGGCGATCCCGGTC
GAGACACCGACAGCACCGAGGTCGACAGCACCGACATGCCCGACCTCGGA
CGCGCGGGAGAAGCAAAGAGCGCCTTAGCAGGAGACGCCGGGGGAAAAGC
TCCCGCCGCCGCCGCCGCCGCCCACCCCGCTGTCGAGGAAGCATCGGCGT
CGCCATCGCCGTCGCCGCTGCCCTCGTCTCCGCCGTTCTTCCTTGGCCGA
CAAGACTCCCCAGCCTGATCGCTTGGTGTACCGAAGTCCGACGCTGCTTC
TCCCTGCGAGGAACCTCCGCCGGCGCACGCCTGCCC
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