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Homology
BLAST of mRNA_E-fasciculatus_F_contig13216.2427.1 vs. uniprot
Match: D8LJW6_ECTSI (Inversin protein alternative isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW6_ECTSI) HSP 1 Score: 225 bits (574), Expect = 1.290e-65 Identity = 118/138 (85.51%), Postives = 127/138 (92.03%), Query Frame = 1
Query: 295 RDHEGSAPGEVFEAEVGLVTRRQIQVLLWGEEATKQLERAKAKPSDPPATENKTAASS-IETRYRRSSTPQVVSQVVSGGASTKAWSPLHLAIHRGSSSEVRELLARPGVDKEELLERSFTPLLLAAQYGRADCIAEV 705
RDHEGSAPGEVFEAEVG TRRQIQVLLWGEEAT+QLERAKAKPSD E++TA SS ++TRYRRSSTPQVVSQVVSGGA+TKAW PLH+AIHRGSSSEVRELL RPGVDKEELLERSF+PLLLAAQ GRADCIAE+
Sbjct: 514 RDHEGSAPGEVFEAEVGPATRRQIQVLLWGEEATEQLERAKAKPSDTTTIEDRTAGSSAVDTRYRRSSTPQVVSQVVSGGATTKAWGPLHMAIHRGSSSEVRELLTRPGVDKEELLERSFSPLLLAAQCGRADCIAEL 651
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 229.2 |
| Seed ortholog evalue | 1.9e-57 |
| Seed eggNOG ortholog | 2880.D8LJW6 |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Ec32 ortholog | Ec-01_009930.1 |
| Exons | 4 |
| Model size | 705 |
| Cds size | 678 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13216.2427.1 >prot_E-fasciculatus_F_contig13216.2427.1 ID=prot_E-fasciculatus_F_contig13216.2427.1|Name=mRNA_E-fasciculatus_F_contig13216.2427.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=226bp
MAAQHAHGALATELLKTGARTNTATNRGFTPLMLAAMYGQQGLLTDLLDR
GADLDAVQETGDTALSLSSFFGRPVAVAELVRRGADVRRRDHEGSAPGEV
FEAEVGLVTRRQIQVLLWGEEATKQLERAKAKPSDPPATENKTAASSIET
RYRRSSTPQVVSQVVSGGASTKAWSPLHLAIHRGSSSEVRELLARPGVDK
EELLERSFTPLLLAAQYGRADCIAEV back to topmRNA from alignment at E-fasciculatus_F_contig13216:929..2958- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig13216.2427.1 ID=mRNA_E-fasciculatus_F_contig13216.2427.1|Name=mRNA_E-fasciculatus_F_contig13216.2427.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2030bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13216:929..2958- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACGTACGCGGATTTAGTGCCCTGCTGATGGCCGCCCAACACGCGCACGG
TGCTCTTGCGACGGAGCTCTTGAAGACCGGGGCCCGGACAAACACCGCGA
CAAATCGCGGTTTCACGCCTCTCATGCTCGCCGCTATGTACGGGCAGCAA
GGCCTGCTCACGGACTTGCTCGACAGAGGTATTTTCCATATACTTCTCTC
TGTACTCAATGGGTCGATGTTGCCTTGTTGAACGTAGCAGTAGTGTTGAC
CCATCCACCACACAAGCTATAAGAAGACTCCCAAGAAAAACGACAGCAGC
TCAGCAGCCCGGTATGAACAAACAAAGCGTCGGTTCGGTGCTTCCCCCGC
AAACGGACGGGGGCGTGCATGATGATGATGAAAACGTCACTCCTGGTGGG
GCGGCAAGAAACGAGGATTCCCTCCCTGCCCCTGGCTCCCTCCCTCCCAG
CGCACAATGGTTAACAGCAAAAACAACCGGCCTCGAATCACCCCCCCCCA
AAAGACACACCTCCTACCAGGAACAGTCGCGCTGGGGGAGTTCCTCTTAT
ACGTAAGAGTATCTCGACTGGAGCAGCATCAAGCCTACTCGGCCAGTTGG
CATACAGATGCCTGTTACGTGGAGTACCGTACTCCCGAAGAAAAGTATTT
CGAGGAAATCCAGGAAATCGAAGAGGGGGAGAGCGACGACGACGCTAACT
TCGCTAAAACCTGGTCCCTCCCCCCGAATTTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTTTCGGGGACAGGAGCCGACCTGGACGCCG
TGCAAGAGACCGGCGACACGGCGCTGAGCCTGTCCTCTTTCTTCGGCAGG
CCGGTTGCGGTGGCGGAGCTGGTGCGTCGCGGGGCGGACGTGCGGCGCCG
CGACCACGAAGGCTCGGCGCCGGGGGAGGTGTTCGAAGCGGAGGTGGGCC
TTGTTACCCGGCGTCAGATCCAGGTGAGTTGACTAGGACGGCGACAGGTC
CCAGACAGCGAATACCCCCTAAACGTTCTTCAGGTGGTGGGGGTGGGGTT
CTTTTTGGTAGACAGTTCCTTCTGCGATTGGTTATCGGGCGGTATTCTGT
AAGGAGAAGAGAACTCTCGTTTCGCTCCGTGAGTGTTGTGACCACACTGC
TAGTACAGAGCAGCGAATCAAACATCCTCCTCCCTTGGCGTTCGGTGACT
TAACACACACAGTAACACAGTGTTCTAGTGCAAAAGACTTCGACCTTTGT
TGTCGACGGTGGCGGGCGACAAACAGAAGGCGAAGCCCCCTCCTTCGCCA
TCCACCCCTCTGGCCACACAAACACAATCGCGTTCTATCCCCTCGGCGCA
AACGCCCCATCCTCTCTCGACGATGAGAGAAGGTCTTGCTCTGGGGAGAG
GAAGCGACGAAGCAGCTCGAGCGAGCCAAGGCCAAACCGTCGGACCCCCC
GGCCACCGAGAACAAGACGGCAGCATCCTCGATCGAGACCAGGTAGAGGT
AGAGATGTCGACGGCTTGGGAGGTTTGCCTCTTGTTTGAAGCATTACGGT
AGCAGCAACAGCACGCAGGTCTCCAACTTTGAGGCAAAGGGAACTTGCGC
GCATAACGACAAACGTGTACGGTGCAGCGATGCAATACAAGGCGCGTGGT
GTAGGAGAACTGCTTTGAAGTTGTGCAACAAAGGGGTTTGCTTCCCCGAC
CTCAAAGCATTCTCGTCAGCTGTCTGCAAAGCGGAACGAACCAATGGTTC
CAATCAGAGCCAAGCAACAAACTGCAGCCCTCCCCCCCCCCCCCCCCCCA
CCAGGTACAGGCGGTCGTCCACCCCGCAGGTCGTTTCGCAAGTCGTGTCC
GGGGGCGCGTCGACGAAAGCGTGGAGTCCGCTTCACTTGGCGATTCACCG
GGGGTCGTCTTCGGAGGTGCGGGAGCTGCTGGCGAGGCCGGGCGTGGACA
AGGAGGAGCTCCTCGAGAGGAGCTTCACACCGCTGCTGCTGGCCGCCCAG
TACGGCCGCGCCGACTGCATAGCAGAGGTG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig13216:929..2958- >mRNA_E-fasciculatus_F_contig13216.2427.1 ID=mRNA_E-fasciculatus_F_contig13216.2427.1|Name=mRNA_E-fasciculatus_F_contig13216.2427.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1356bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13216:929..2958- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCGCCCAACACGCGCACGGTGCTCTTGCGACGGAGCTCTTGAAGAC
CGGGGCCCGGACAAACACCGCGACAAATCGCGGTTTCACGCCTCTCATGC
TCGCCGCTATGTACGGGCAGCAAGGCCTGCTCACGGACTTGCTCGACAGA
GATGGCCGCCCAACACGCGCACGGTGCTCTTGCGACGGAGCTCTTGAAGA
CCGGGGCCCGGACAAACACCGCGACAAATCGCGGTTTCACGCCTCTCATG
CTCGCCGCTATGTACGGGCAGCAAGGCCTGCTCACGGACTTGCTCGACAG
AGGAGCCGACCTGGACGCCGTGCAAGAGACCGGCGACACGGCGCTGAGCC
TGTCCTCTTTCTTCGGCAGGCCGGTTGCGGTGGCGGAGCTGGTGCGTCGC
GGGGCGGACGTGCGGCGCCGCGACCACGAAGGCTCGGCGCCGGGGGAGGT
GTTCGAAGCGGAGGTGGGCCTTGTTACCCGGCGTCAGATCCAGGAGCCGA
CCTGGACGCCGTGCAAGAGACCGGCGACACGGCGCTGAGCCTGTCCTCTT
TCTTCGGCAGGCCGGTTGCGGTGGCGGAGCTGGTGCGTCGCGGGGCGGAC
GTGCGGCGCCGCGACCACGAAGGCTCGGCGCCGGGGGAGGTGTTCGAAGC
GGAGGTGGGCCTTGTTACCCGGCGTCAGATCCAGGTCTTGCTCTGGGGAG
AGGAAGCGACGAAGCAGCTCGAGCGAGCCAAGGCCAAACCGTCGGACCCC
CCGGCCACCGAGAACAAGACGGCAGCATCCTCGATCGAGACCAGGTCTTG
CTCTGGGGAGAGGAAGCGACGAAGCAGCTCGAGCGAGCCAAGGCCAAACC
GTCGGACCCCCCGGCCACCGAGAACAAGACGGCAGCATCCTCGATCGAGA
CCAGGTACAGGCGGTCGTCCACCCCGCAGGTCGTTTCGCAAGTCGTGTCC
GGGGGCGCGTCGACGAAAGCGTGGAGTCCGCTTCACTTGGCGATTCACCG
GGGGTCGTCTTCGGAGGTGCGGGAGCTGCTGGCGAGGCCGGGCGTGGACA
AGGAGGAGCTCCTCGAGAGGAGCTTCACACCGCTGCTGCTGGCCGCCCAG
TACGGCCGCGCCGACTGCATAGCAGAGGTGGTACAGGCGGTCGTCCACCC
CGCAGGTCGTTTCGCAAGTCGTGTCCGGGGGCGCGTCGACGAAAGCGTGG
AGTCCGCTTCACTTGGCGATTCACCGGGGGTCGTCTTCGGAGGTGCGGGA
GCTGCTGGCGAGGCCGGGCGTGGACAAGGAGGAGCTCCTCGAGAGGAGCT
TCACACCGCTGCTGCTGGCCGCCCAGTACGGCCGCGCCGACTGCATAGCA
GAGGTG back to top
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