mRNA_E-fasciculatus_F_contig13208.2418.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13208.2418.1
Unique NamemRNA_E-fasciculatus_F_contig13208.2418.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 1.470e-81
Identity = 137/173 (79.19%), Postives = 143/173 (82.66%), Query Frame = 1 
Query:    7 HPYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQARRG 525
            HP+LLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALG +                 +++LI            QGVVEYVDVNEENNCLVGLADGDLT+NHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQARRG
Sbjct:  619 HPFLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGVL----------------SLQDLI-----------KQGVVEYVDVNEENNCLVGLADGDLTINHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQARRG 764
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BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.640e-62
Identity = 111/169 (65.68%), Postives = 127/169 (75.15%), Query Frame = 1 
Query:   10 PYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 516
            P L   ++RFLRR+GMVGEFVSVYLH V+RAVYIASDGGRVCRPLLVVENG+T LT+ H+ Q+A G                +R +K+L+ +           GVVEYVDVNEENNCL+ L+D DLT  HTHLE+DPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA
Sbjct:  592 PELFVRRLRFLRRQGMVGEFVSVYLHDVQRAVYIASDGGRVCRPLLVVENGQTLLTERHMAQLASG----------------VRGLKDLLRI-----------GVVEYVDVNEENNCLIALSDADLTERHTHLEVDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 733
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BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A7S4DBE3_HETAK (DNA-directed RNA polymerase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBE3_HETAK)

HSP 1 Score: 195 bits (495), Expect = 7.260e-57
Identity = 98/172 (56.98%), Postives = 115/172 (66.86%), Query Frame = 1 
Query:    1 YRHPYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 516
            +R P     + RFLRR+G+V EFVSVYLH+ +RAVY+A+DGGR+CRPLLVVE GR  LT  H++Q+  G                           L S       GVVEYVDVNEENNC + L + +LT  HTH+EIDPLTLLGVVAGL+PYPHHNQSPRNTYQCAMGKQA
Sbjct:  175 HRRPREFVRRFRFLRRQGLVTEFVSVYLHAPQRAVYLAADGGRLCRPLLVVEGGRPLLTALHMEQLRAG---------------------------LTSLGALLNDGVVEYVDVNEENNCYIALKEEELTPQHTHVEIDPLTLLGVVAGLVPYPHHNQSPRNTYQCAMGKQA 319
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BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A6U4JF41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JF41_9STRA)

HSP 1 Score: 201 bits (512), Expect = 3.620e-56
Identity = 101/169 (59.76%), Postives = 121/169 (71.60%), Query Frame = 1 
Query:   10 PYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 516
            P  LA ++RFLRR+G VGEFVS+YLHS +RAVYIASDGGRVCRPLLVVE GR RLT  H+  +++G                +  + +L+             GVVEYVDVNEENNC + L + +LT +HTHLEIDPLT++GVVAGLIP+PHHNQSPRNTYQCAMGKQA
Sbjct:  558 PQDLARRLRFLRRRGCVGEFVSIYLHSGKRAVYIASDGGRVCRPLLVVEGGRLRLTTNHIRHLSMG----------------LGTLPDLLA-----------DGVVEYVDVNEENNCFIALKEEELTPSHTHLEIDPLTIMGVVAGLIPFPHHNQSPRNTYQCAMGKQA 699
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BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A7S2WH87_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH87_9STRA)

HSP 1 Score: 197 bits (502), Expect = 8.170e-55
Identity = 98/169 (57.99%), Postives = 122/169 (72.19%), Query Frame = 1 
Query:   10 PYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 516
            P L  + +R LRR+G VGEFVSVYLHSV+RAVY+ASDGGRVCRPLLVV+NG+  L + H+ Q+A G                +R +K+L+            + +VEY+DVNEENNCL+ L+D  LT  HTH+EIDPLT++GVV+GLIP+PHHNQSPRNTYQCAMGKQA
Sbjct:  555 PRLFVDMLRALRRRGRVGEFVSVYLHSVQRAVYVASDGGRVCRPLLVVKNGQPMLRQIHMQQLAAG----------------LRTLKDLM-----------REEIVEYIDVNEENNCLIALSDRMLTPEHTHMEIDPLTIMGVVSGLIPFPHHNQSPRNTYQCAMGKQA 696
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BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A7S2DCI5_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCI5_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.900e-53
Identity = 95/169 (56.21%), Postives = 114/169 (67.46%), Query Frame = 1 
Query:   10 PYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 516
            P       R LRRKG+VGEFVSVYLHSV  A+Y+A+DGGRVCRPLLV   G+ RLT+ H+ Q+ LG                           L S +    +G+VEY+DVNEENNC+V L++ +LT  HTHLEIDPLTL+GVV+GLIP+PHHNQSPRNTY CAMGKQA
Sbjct:  426 PKRFVKYFRTLRRKGLVGEFVSVYLHSVHHAIYVATDGGRVCRPLLVCTKGKPRLTQVHMSQLGLG---------------------------LRSLTDLMKEGIVEYMDVNEENNCMVALSEKELTPEHTHLEIDPLTLMGVVSGLIPFPHHNQSPRNTYTCAMGKQA 567
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BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 191 bits (484), Expect = 2.210e-52
Identity = 99/169 (58.58%), Postives = 113/169 (66.86%), Query Frame = 1 
Query:   10 PYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 516
            P      +R LRRKG+V EFVSV LH V+RA+YIA+DGGRVCRPLLV E G  RLT   + Q++ G +  +           IRC                  GVVEYVDVNEENNCL+ LA   LT+ HTH+EIDPLT+LGVVAGLIPYPHHNQSPRNTYQCAMGKQA
Sbjct:  590 PLRFVRLLRLLRRKGLVAEFVSVCLHEVQRAIYIATDGGRVCRPLLVCEKGVPRLTNMMMRQLSSGLLTLAEL---------IRC------------------GVVEYVDVNEENNCLIALAQTQLTVKHTHMEIDPLTVLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 731
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BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A813AD60_9DINO (DNA-directed RNA polymerase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AD60_9DINO)

HSP 1 Score: 177 bits (449), Expect = 6.860e-52
Identity = 89/174 (51.15%), Postives = 116/174 (66.67%), Query Frame = 1 
Query:    1 YRHPYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENG--RTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 516
            +R P  LA  +R LRR G++GEFVS+++H V +AV +A DGGR+CRPL++V+     +R+T  H+D++  G   F+  SL+S                         +  +EYVDVNEENNCL+ L + D+  N TH+EIDPLT+LGVVAGLIPYPHHNQSPRNTYQCAMGKQA
Sbjct:   72 HREPNTLAANMRLLRRNGLIGEFVSIFVHDVHKAVNVACDGGRICRPLIIVDQATQESRITADHIDEITNGTRDFN--SLLS-------------------------ESCIEYVDVNEENNCLIALREEDIGPNTTHVEIDPLTILGVVAGLIPYPHHNQSPRNTYQCAMGKQA 218
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BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A5A8CMB6_CAFRO (DNA-directed RNA polymerase subunit beta n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CMB6_CAFRO)

HSP 1 Score: 188 bits (477), Expect = 1.990e-51
Identity = 97/172 (56.40%), Postives = 116/172 (67.44%), Query Frame = 1 
Query:    1 YRHPYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 516
            +R PY  A   R  RR G++GEFVSVY+H   RAV IASDGGR+CRP++VVE G+ RLT  H+  +A G V F+  SL+S                          GV+EY+DVNEENNCL+ L + D+T   THLEIDP+T+LGVVAGLIPYPHHNQSPRNTYQCAMGKQA
Sbjct:  846 HRRPYDFAKAFRIFRRAGILGEFVSVYVHDGLRAVNIASDGGRICRPVVVVEQGQPRLTARHMRDLAAGLVDFN--SLLST-------------------------GVLEYLDVNEENNCLIALREADITRATTHLEIDPVTILGVVAGLIPYPHHNQSPRNTYQCAMGKQA 990
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BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A482SPL4_9ARCH (DNA-directed RNA polymerase subunit beta n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPL4_9ARCH)

HSP 1 Score: 186 bits (472), Expect = 5.170e-51
Identity = 92/172 (53.49%), Postives = 117/172 (68.02%), Query Frame = 1 
Query:    1 YRHPYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 516
            +  P  L  +IR LRR+G +GEFVSVYL+ +++ VYIASDGGRVCRPLL+++ G+ +L + H++Q  LG                         V LP       QGV+EYVDVNEENNC + L + ++TL HTH+EIDP T+LG+VAGL+PYPHHNQSPRNTYQCAMGKQA
Sbjct:  340 HERPNELVERIRSLRRRGHIGEFVSVYLNVIQKGVYIASDGGRVCRPLLILDQGKLKLEQKHIEQ--LGKT-----------------------VSLPDLLA---QGVMEYVDVNEENNCFIALKESEITLEHTHMEIDPSTILGIVAGLVPYPHHNQSPRNTYQCAMGKQA 483
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAF8_9PHAE1.470e-8179.19DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A835Z565_9STRA1.640e-6265.68DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S4DBE3_HETAK7.260e-5756.98DNA-directed RNA polymerase (Fragment) n=1 Tax=Het... [more]
A0A6U4JF41_9STRA3.620e-5659.76DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A7S2WH87_9STRA8.170e-5557.99DNA-directed RNA polymerase subunit beta n=1 Tax=R... [more]
A0A7S2DCI5_9STRA2.900e-5356.21DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
I2CNY0_NANGC2.210e-5258.58DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
A0A813AD60_9DINO6.860e-5251.15DNA-directed RNA polymerase n=1 Tax=Symbiodinium s... [more]
A0A5A8CMB6_CAFRO1.990e-5156.40DNA-directed RNA polymerase subunit beta n=3 Tax=S... [more]
A0A482SPL4_9ARCH5.170e-5153.49DNA-directed RNA polymerase subunit beta n=1 Tax=a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13208contigE-fasciculatus_F_contig13208:883..2376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.9
Seed ortholog evalue3.9e-44
Seed eggNOG ortholog164328.Phyra71643
Preferred namePOLR3B
KEGG rclassRC02795
KEGG koko:K03010,ko:K03021
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181
GOsGO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009553,GO:0009561,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032501,GO:0032502,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048229,GO:0048518,GO:0048583,GO:0048584,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0051239,GO:0051240,GO:0055029,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
EggNOG OGs3QAXU@4776,COG0085@1,KOG0215@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categorymitochondrion
Exons4
Model size634
Cds size633
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13208.2418.1prot_E-fasciculatus_F_contig13208.2418.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13208 883..2375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927824.4183354-CDS-E-fasciculatus_F_contig13208:882..10891622927824.4183354-CDS-E-fasciculatus_F_contig13208:882..1089Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13208 883..1089 +
1695995710.5241659-CDS-E-fasciculatus_F_contig13208:882..10891695995710.5241659-CDS-E-fasciculatus_F_contig13208:882..1089Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13208 883..1089 +
1622927824.431081-CDS-E-fasciculatus_F_contig13208:1218..13261622927824.431081-CDS-E-fasciculatus_F_contig13208:1218..1326Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13208 1219..1326 +
1695995710.5367365-CDS-E-fasciculatus_F_contig13208:1218..13261695995710.5367365-CDS-E-fasciculatus_F_contig13208:1218..1326Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13208 1219..1326 +
1622927824.4410262-CDS-E-fasciculatus_F_contig13208:1533..17651622927824.4410262-CDS-E-fasciculatus_F_contig13208:1533..1765Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13208 1534..1765 +
1695995710.5458746-CDS-E-fasciculatus_F_contig13208:1533..17651695995710.5458746-CDS-E-fasciculatus_F_contig13208:1533..1765Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13208 1534..1765 +
1622927824.487486-CDS-E-fasciculatus_F_contig13208:2289..23751622927824.487486-CDS-E-fasciculatus_F_contig13208:2289..2375Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13208 2290..2375 +
1695995710.5553696-CDS-E-fasciculatus_F_contig13208:2289..23751695995710.5553696-CDS-E-fasciculatus_F_contig13208:2289..2375Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13208 2290..2375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13208.2418.1

>prot_E-fasciculatus_F_contig13208.2418.1 ID=prot_E-fasciculatus_F_contig13208.2418.1|Name=mRNA_E-fasciculatus_F_contig13208.2418.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=211bp
YRHPYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLV
VENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSF
SRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGL
IPYPHHNQSPRNTYQCAMGKQARRGEGGGHRGSYGRPAVRPGAPPEAHGH
HPGAGPRTLRS
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mRNA from alignment at E-fasciculatus_F_contig13208:883..2376+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13208.2418.1 ID=mRNA_E-fasciculatus_F_contig13208.2418.1|Name=mRNA_E-fasciculatus_F_contig13208.2418.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1494bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13208:883..2376+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACAGGCATCCGTACTTGCTGGCGAACAAGATCCGCTTCCTCAGGAGAAA
AGGCATGGTGGGCGAGTTCGTCAGCGTCTACCTGCACTCGGTTCGGCGAG
CCGTGTACATCGCCAGCGACGGGGGTCGGGTGTGCAGGCCCCTGCTGGTG
GTGGAGAACGGGCGCACCCGCCTGACCAAGACCCACCTCGACCAGATGGC
GCTGGGGGTGCTCTCCTTGCAAGGTTTGAGCCAAAGCTAGCTCTTGTAGC
TACTTGTAGCTGCCTCAAACCTCGTTTTGTTTTTTTGTGTTTTCTATCGC
TCCACCACGTGTCATCCCGCTGTAGGTATCTACCAGGCTGTGCTCTTTTC
GCGCTGTTCTCTCATCTCTGTAGAATATGTTCGTATCCGCTGCATCAAAA
ACCTCATTTGCGTTTTTTTACCGTCGTTTTCCCGCGCTCCCCCGGTATGC
CCCATATCCCGCCCCACCAAAGTGAAGACCTCCTTAATCCCTCTCTTTTT
TTCCCCCGAATTTTGATTCTCCTTGTTTCCTCATCTCTGCAGATAGTATA
TACGTATCCGCTTTGTAAATCAGACCTAAACTTGTCGTTCTCATTTTCCA
CGCGTCCGTTGGCATGCCCCCATTTTTCCCCGCGTGTTAGACCTGATCAA
GCAGGGTGTCGTGGAGTACGTGGACGTGAATGAGGAGAACAACTGCCTTG
TGGGCCTCGCCGACGGTGACCTGACCCTCAACCACACCCACCTAGAGATC
GACCCCCTCACCCTCCTCGGCGTCGTGGCCGGCCTCATCCCCTACCCCCA
CCACAACCAGAGCCCCCGGAACACGTACCAGTGCGCCATGGGCAAGCAGG
CGAGAAGGGGGGAGGGGGGGGGGCACCGTGGCTGTAGAGATTTGGAAGAC
ATTTTTCTTAGAACGATTGCAAGTGCATCAAACGAGCTCTTGTGAACGAC
GGTCAGTCGTCCTGATGTGCACATGCATCCTCTCTCAAGCCGTGCGTGGT
GAGTGGTGAGTGGTGAGTTTTGACCGTTTTTTTTTTTTTTCCGTCGTGCC
CGCTCGACATCAGAACGGCTAAGAACCTACAACACTTGTAATAGTAACAA
AACCCTGTGTGTTGTCTGAACTGAATCACATGCATATATGCAATCATCTA
CATTTCTTCATGGATACCAATGAGCTGGATCATGTACAGCGGTGCCAATC
ATACATACACCAGAAGAGAGAACGAGTTCGAGCATCACCAGACATGGCCG
TACCTTCTCCCCACGTAAAACTTTGCGTGGAGGGCTCACGATTTGCCGTC
ACTCCACCGCTTCGTGTTTTTACGAGCCCTTGTCCCATCGCCTTTTTTTG
TTGTTTTCGTTACTACCGTCACAGGCGATGGGAACGACGGCGCTTAACAT
GCACGAGCGTATGGACGGCCTGCTGTACGCCCTGGTGCACCCCCAGAAGC
CCATGGTCACCACCCGGGTGCTGGACCTCGTACACTTCGATCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13208:883..2376+

>mRNA_E-fasciculatus_F_contig13208.2418.1 ID=mRNA_E-fasciculatus_F_contig13208.2418.1|Name=mRNA_E-fasciculatus_F_contig13208.2418.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1266bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13208:883..2376+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACAGGCATCCGTACTTGCTGGCGAACAAGATCCGCTTCCTCAGGAGAAA
AGGCATGGTGGGCGAGTTCGTCAGCGTCTACCTGCACTCGGTTCGGCGAG
CCGTGTACATCGCCAGCGACGGGGGTCGGGTGTGCAGGCCCCTGCTGGTG
GTGGAGAACGGGCGCACCCGCCTGACCAAGACCCACCTCGACCAGATGGC
GCTGGGGTACAGGCATCCGTACTTGCTGGCGAACAAGATCCGCTTCCTCA
GGAGAAAAGGCATGGTGGGCGAGTTCGTCAGCGTCTACCTGCACTCGGTT
CGGCGAGCCGTGTACATCGCCAGCGACGGGGGTCGGGTGTGCAGGCCCCT
GCTGGTGGTGGAGAACGGGCGCACCCGCCTGACCAAGACCCACCTCGACC
AGATGGCGCTGGGGGCTGTGCTCTTTTCGCGCTGTTCTCTCATCTCTGTA
GAATATGTTCGTATCCGCTGCATCAAAAACCTCATTTGCGTTTTTTTACC
GTCGTTTTCCCGCGCTCCCCCGGCTGTGCTCTTTTCGCGCTGTTCTCTCA
TCTCTGTAGAATATGTTCGTATCCGCTGCATCAAAAACCTCATTTGCGTT
TTTTTACCGTCGTTTTCCCGCGCTCCCCCGCAGGGTGTCGTGGAGTACGT
GGACGTGAATGAGGAGAACAACTGCCTTGTGGGCCTCGCCGACGGTGACC
TGACCCTCAACCACACCCACCTAGAGATCGACCCCCTCACCCTCCTCGGC
GTCGTGGCCGGCCTCATCCCCTACCCCCACCACAACCAGAGCCCCCGGAA
CACGTACCAGTGCGCCATGGGCAAGCAGGCGAGAAGGGGGGAGGGGGGGG
GGCACCGTGGCTCAGGGTGTCGTGGAGTACGTGGACGTGAATGAGGAGAA
CAACTGCCTTGTGGGCCTCGCCGACGGTGACCTGACCCTCAACCACACCC
ACCTAGAGATCGACCCCCTCACCCTCCTCGGCGTCGTGGCCGGCCTCATC
CCCTACCCCCACCACAACCAGAGCCCCCGGAACACGTACCAGTGCGCCAT
GGGCAAGCAGGCGAGAAGGGGGGAGGGGGGGGGGCACCGTGGCTCGTATG
GACGGCCTGCTGTACGCCCTGGTGCACCCCCAGAAGCCCATGGTCACCAC
CCGGGTGCTGGACCTCGTACACTTCGATCACGTATGGACGGCCTGCTGTA
CGCCCTGGTGCACCCCCAGAAGCCCATGGTCACCACCCGGGTGCTGGACC
TCGTACACTTCGATCA
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