mRNA_E-fasciculatus_F_contig13192.2408.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13192.2408.1
Unique NamemRNA_E-fasciculatus_F_contig13192.2408.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13192.2408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13192contigE-fasciculatus_F_contig13192:1181..1589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size410
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927822.3380017-UTR-E-fasciculatus_F_contig13192:1180..12741622927822.3380017-UTR-E-fasciculatus_F_contig13192:1180..1274Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13192 1181..1274 +
1695995709.723769-UTR-E-fasciculatus_F_contig13192:1180..12741695995709.723769-UTR-E-fasciculatus_F_contig13192:1180..1274Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13192 1181..1274 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927822.3493984-CDS-E-fasciculatus_F_contig13192:1274..15891622927822.3493984-CDS-E-fasciculatus_F_contig13192:1274..1589Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13192 1275..1589 +
1695995709.7320383-CDS-E-fasciculatus_F_contig13192:1274..15891695995709.7320383-CDS-E-fasciculatus_F_contig13192:1274..1589Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13192 1275..1589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13192.2408.1prot_E-fasciculatus_F_contig13192.2408.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13192 1275..1589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13192.2408.1

>prot_E-fasciculatus_F_contig13192.2408.1 ID=prot_E-fasciculatus_F_contig13192.2408.1|Name=mRNA_E-fasciculatus_F_contig13192.2408.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
MSLSTITTIRLSAAKDDQSSATKHNEKPEINSNNATSLTTNANQHQKLPT
ETAQNQNENLESAHRSKPVRLLALHFGPDFDISANTPRRLSPVAIRSSSS
APAAN
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mRNA from alignment at E-fasciculatus_F_contig13192:1181..1589+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13192.2408.1 ID=mRNA_E-fasciculatus_F_contig13192.2408.1|Name=mRNA_E-fasciculatus_F_contig13192.2408.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=409bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13192:1181..1589+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAATCTTCGATTTTGTAGAAATTCTGCATCATCACCACAAATTTTCCAGC
TTCCATGTACAGCGAACAACAGTGGTTAGCGACAAAGGTTTGCAATGTCT
CTGTCTACCATCACGACCATACGCTTATCTGCAGCAAAAGATGATCAGTC
CTCCGCAACAAAACACAATGAAAAACCAGAAATTAACAGCAATAACGCTA
CCAGTCTAACAACGAATGCCAACCAACATCAGAAATTGCCTACAGAAACC
GCACAAAATCAAAATGAAAACCTCGAAAGTGCCCACCGCAGCAAGCCCGT
CAGACTCCTTGCGTTGCACTTCGGTCCAGACTTCGACATCTCCGCCAATA
CGCCACGGCGCCTTTCTCCCGTCGCCATCAGATCCTCCTCCTCTGCTCCC
GCCGCAAAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13192:1181..1589+

>mRNA_E-fasciculatus_F_contig13192.2408.1 ID=mRNA_E-fasciculatus_F_contig13192.2408.1|Name=mRNA_E-fasciculatus_F_contig13192.2408.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13192:1181..1589+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTCTGTCTACCATCACGACCATACGCTTATCTGCAGCAAAAGATGA
TCAGTCCTCCGCAACAAAACACAATGAAAAACCAGAAATTAACAGCAATA
ACGCTACCAGTCTAACAACGAATGCCAACCAACATCAGAAATTGCCTACA
GAAACCGCACAAAATCAAAATGAAAACCTCGAAAGTGCCCACCGCAGCAA
GCCCGTCAGACTCCTTGCGTTGCACTTCGGTCCAGACTTCGACATCTCCG
CCAATACGCCACGGCGCCTTTCTCCCGTCGCCATCAGATCCTCCTCCTCT
GCTCCCGCCGCAAACATGTCTCTGTCTACCATCACGACCATACGCTTATC
TGCAGCAAAAGATGATCAGTCCTCCGCAACAAAACACAATGAAAAACCAG
AAATTAACAGCAATAACGCTACCAGTCTAACAACGAATGCCAACCAACAT
CAGAAATTGCCTACAGAAACCGCACAAAATCAAAATGAAAACCTCGAAAG
TGCCCACCGCAGCAAGCCCGTCAGACTCCTTGCGTTGCACTTCGGTCCAG
ACTTCGACATCTCCGCCAATACGCCACGGCGCCTTTCTCCCGTCGCCATC
AGATCCTCCTCCTCTGCTCCCGCCGCAAAC
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