mRNA_E-fasciculatus_F_contig13176.2396.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13176.2396.1
Unique NamemRNA_E-fasciculatus_F_contig13176.2396.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13176.2396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13176contigE-fasciculatus_F_contig13176:859..2145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13176.2396.1prot_E-fasciculatus_F_contig13176.2396.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13176 859..2131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927820.9453354-CDS-E-fasciculatus_F_contig13176:858..9341622927820.9453354-CDS-E-fasciculatus_F_contig13176:858..934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13176 859..934 +
1695995708.892487-CDS-E-fasciculatus_F_contig13176:858..9341695995708.892487-CDS-E-fasciculatus_F_contig13176:858..934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13176 859..934 +
1622927820.9614093-CDS-E-fasciculatus_F_contig13176:1901..21311622927820.9614093-CDS-E-fasciculatus_F_contig13176:1901..2131Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13176 1902..2131 +
1695995708.9020317-CDS-E-fasciculatus_F_contig13176:1901..21311695995708.9020317-CDS-E-fasciculatus_F_contig13176:1901..2131Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13176 1902..2131 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927820.974068-UTR-E-fasciculatus_F_contig13176:2131..21451622927820.974068-UTR-E-fasciculatus_F_contig13176:2131..2145Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13176 2132..2145 +
1695995708.9123151-UTR-E-fasciculatus_F_contig13176:2131..21451695995708.9123151-UTR-E-fasciculatus_F_contig13176:2131..2145Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13176 2132..2145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13176.2396.1

>prot_E-fasciculatus_F_contig13176.2396.1 ID=prot_E-fasciculatus_F_contig13176.2396.1|Name=mRNA_E-fasciculatus_F_contig13176.2396.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=102bp
KLSGRTCTGRCTCTVCWTPCRAARAARLFLGGCLRRGDERPRCRSKERGK
GSSLAARCEIRRGARRDEDRACDRGAAAGRRCRGGRRWLGGRIRGRRRRR
W*
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mRNA from alignment at E-fasciculatus_F_contig13176:859..2145+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13176.2396.1 ID=mRNA_E-fasciculatus_F_contig13176.2396.1|Name=mRNA_E-fasciculatus_F_contig13176.2396.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1287bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13176:859..2145+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGCTTTCGGGGCGGACATGCACAGGGCGTTGTACCTGTACTGTGTGTTG
GACACCATGCAGGGCAGCAAGAGCAGGTGGGAAAACCTGTTGATGCAAGG
TGTGCGGTGTGTTCATTGATGCCGTGTACAATGTAGGGTGCAACGTGCGT
TGTTTTATCACCAGATGCAACGCCGGCTACTGCTGTTTTTTTGTTTATTT
GCCTGGTGCGTAAAAGAACACGCTTCCAAGAAGAACACGGCAGCACACAT
GGCTGGTTGCCAACCATCTGCTTATGCTTCTGCTGTGTTTGGCTGTCCAA
CCCCTAGGATTCGCAGAGTGGCTGCACCTGCTGATACATCTATTGCATTC
ATGCATTCGCTGGTTGTGTGCCGATATTTTATTAGTTGGTGCATGCGCAT
CGAATTTTTCCAGACCGCGTTGTTGCGGTCATCCTGTGCACAACCCTACA
ACCTACGGTTGTATCCCTGTGTATGTCACGATTCCGACCCCCAGTCAGAG
ACAAGTCTTGTTGATGCCCCTCCATCATGCACCCTATAGGAGCCAGCTGA
ATCATTGGATAGATAGTCGAAACTCTCTAAGGAAAATGTCTTACGAGCTA
CTCCGTCTGAAACTCTTTCCACTTGAAGTATATGGGCAGATTATACTCCA
AGAGTAATACACACAAGAAGCAACGTGCTCGTATTGTGTGGCTCGCCTGT
TGTGTGCAAGCGCGCAAAGATCGAAGTCCCTCGCGGCACTTGAAGTGCAT
TATAGTCGTGCCTGCCCGTTGGTTAGCCGAGATGCCCAATCAACCCATGG
CATATTTGGAGTTCAAAAGCAAACCCAATCATCCTTGTGAAACGTAGCAT
GGGGCGGCAAAACCTCGGCATATTGCCGCGTGCCGGCATTGTAAGGATGG
GAGGTCTACATATGGTCTAACTATTTCGCTACTGTACGGCATGAGTTTCA
CATGAGTCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNTTCTTCTC
GACCATTTGCCGCTGGCTCGTTTTCCGTGGCCGCCGCCGACAGCTCGACT
TTTCCTCGGAGGATGTCTGAGGCGAGGGGATGAACGCCCTCGTTGCCGCT
CGAAGGAGAGAGGCAAGGGCTCTTCACTGGCGGCAAGGTGCGAAATAAGA
AGAGGAGCGAGGAGGGACGAGGACCGCGCTTGCGATCGAGGCGCCGCCGC
CGGCCGCCGCTGCAGAGGAGGGCGGCGGTGGCTCGGCGGGCGAATTAGAG
GGCGACGCCGGCGACGATGGTAACGGTGTCAAGGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13176:859..2145+

>mRNA_E-fasciculatus_F_contig13176.2396.1 ID=mRNA_E-fasciculatus_F_contig13176.2396.1|Name=mRNA_E-fasciculatus_F_contig13176.2396.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13176:859..2145+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGCTTTCGGGGCGGACATGCACAGGGCGTTGTACCTGTACTGTGTGTTG
GACACCATGCAGGGCAGCAAGAGCAGAAGCTTTCGGGGCGGACATGCACA
GGGCGTTGTACCTGTACTGTGTGTTGGACACCATGCAGGGCAGCAAGAGC
AGCTCGACTTTTCCTCGGAGGATGTCTGAGGCGAGGGGATGAACGCCCTC
GTTGCCGCTCGAAGGAGAGAGGCAAGGGCTCTTCACTGGCGGCAAGGTGC
GAAATAAGAAGAGGAGCGAGGAGGGACGAGGACCGCGCTTGCGATCGAGG
CGCCGCCGCCGGCCGCCGCTGCAGAGGAGGGCGGCGGTGGCTCGGCGGGC
GAATTAGAGGGCGACGCCGGCGACGATGGTAACTCGACTTTTCCTCGGAG
GATGTCTGAGGCGAGGGGATGAACGCCCTCGTTGCCGCTCGAAGGAGAGA
GGCAAGGGCTCTTCACTGGCGGCAAGGTGCGAAATAAGAAGAGGAGCGAG
GAGGGACGAGGACCGCGCTTGCGATCGAGGCGCCGCCGCCGGCCGCCGCT
GCAGAGGAGGGCGGCGGTGGCTCGGCGGGCGAATTAGAGGGCGACGCCGG
CGACGATGGTAA
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