mRNA_E-fasciculatus_F_contig13175.2393.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13175.2393.1
Unique NamemRNA_E-fasciculatus_F_contig13175.2393.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13175.2393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13175contigE-fasciculatus_F_contig13175:932..1297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size356
Cds size198
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13175.2393.1prot_E-fasciculatus_F_contig13175.2393.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13175 932..1140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927820.7147923-CDS-E-fasciculatus_F_contig13175:931..10641622927820.7147923-CDS-E-fasciculatus_F_contig13175:931..1064Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13175 932..1064 -
1695995708.7843385-CDS-E-fasciculatus_F_contig13175:931..10641695995708.7843385-CDS-E-fasciculatus_F_contig13175:931..1064Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13175 932..1064 -
1622927820.7300982-CDS-E-fasciculatus_F_contig13175:1075..11401622927820.7300982-CDS-E-fasciculatus_F_contig13175:1075..1140Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13175 1076..1140 -
1695995708.8016891-CDS-E-fasciculatus_F_contig13175:1075..11401695995708.8016891-CDS-E-fasciculatus_F_contig13175:1075..1140Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13175 1076..1140 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927820.7427647-UTR-E-fasciculatus_F_contig13175:1140..12971622927820.7427647-UTR-E-fasciculatus_F_contig13175:1140..1297Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13175 1141..1297 -
1695995708.8148263-UTR-E-fasciculatus_F_contig13175:1140..12971695995708.8148263-UTR-E-fasciculatus_F_contig13175:1140..1297Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13175 1141..1297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13175.2393.1

>prot_E-fasciculatus_F_contig13175.2393.1 ID=prot_E-fasciculatus_F_contig13175.2393.1|Name=mRNA_E-fasciculatus_F_contig13175.2393.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
MSFLWSGLLQSLVALGMKIPCKWVASDLCSLDCTPPTRRCLMPAVDSTDP
HPPIPLINPQFVSSAC
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mRNA from alignment at E-fasciculatus_F_contig13175:932..1297-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13175.2393.1 ID=mRNA_E-fasciculatus_F_contig13175.2393.1|Name=mRNA_E-fasciculatus_F_contig13175.2393.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=366bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13175:932..1297- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATACACGCACATTGGTGTGTCCCTGTTTGTACTATGGATGGAGCCTGACG
CTTTTCCGCATAAAACCAACGTAGCATTCTAATCTTGCAGTAGTCGATGT
TCGCTCGTGGGAGGCGGGAGGCGTGCACCGCACGAGGGACATAGAGGGGG
CAACTGTATGTCGTTTCTGTGGTCGGGGCTTTTGCAATCTCTTGTGGCGT
TAGGAATGAAAATACCGTGCAAGTGCTGTGTAGGTGGGTCGCTTCTGATC
TTTGCAGTCTGGATTGCACACCGCCCACCCGTCGCTGTCTGATGCCTGCC
GTTGACTCTACTGACCCCCACCCGCCCATCCCCCTTATCAACCCCCAGTT
TGTGTCGTCTGCATGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13175:932..1297-

>mRNA_E-fasciculatus_F_contig13175.2393.1 ID=mRNA_E-fasciculatus_F_contig13175.2393.1|Name=mRNA_E-fasciculatus_F_contig13175.2393.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13175:932..1297- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGTTTCTGTGGTCGGGGCTTTTGCAATCTCTTGTGGCGTTAGGAAT
GAAAATACCGTGCAAATGTCGTTTCTGTGGTCGGGGCTTTTGCAATCTCT
TGTGGCGTTAGGAATGAAAATACCGTGCAAGTGGGTCGCTTCTGATCTTT
GCAGTCTGGATTGCACACCGCCCACCCGTCGCTGTCTGATGCCTGCCGTT
GACTCTACTGACCCCCACCCGCCCATCCCCCTTATCAACCCCCAGTTTGT
GTCGTCTGCATGCGTGGGTCGCTTCTGATCTTTGCAGTCTGGATTGCACA
CCGCCCACCCGTCGCTGTCTGATGCCTGCCGTTGACTCTACTGACCCCCA
CCCGCCCATCCCCCTTATCAACCCCCAGTTTGTGTCGTCTGCATGC
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