mRNA_E-fasciculatus_F_contig13172.2392.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig13172.2392.1
Unique Name	mRNA_E-fasciculatus_F_contig13172.2392.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig13172.2392.1 vs. uniprot
Match: D7FR84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR84_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.010e-24
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 RFERIETLPGLPEEETARKILESLAADPGVRAVLEKHRWTVGALCELYPE 150
            RFERIETLPGLPEEETARKILESLAADPGVRAVLEKHRWTVGALCELYPE
Sbjct:  146 RFERIETLPGLPEEETARKILESLAADPGVRAVLEKHRWTVGALCELYPE 195

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BLAST of mRNA_E-fasciculatus_F_contig13172.2392.1 vs. uniprot
Match: A0A7S3XML3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XML3_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 2.230e-16
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 1

Query:    1 RFERIETLPGLPEEETARKILESLAADPGVRAVLEKHRWTVGALCELYPE 150
            RF RIETLPGLP ++ AR ILE LA D G+  V+EKHRW VGALCELYPE
Sbjct:    5 RFGRIETLPGLPGQDEARSILEQLANDRGILKVMEKHRWQVGALCELYPE 54

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BLAST of mRNA_E-fasciculatus_F_contig13172.2392.1 vs. uniprot
Match: W4FVA6_9STRA (WLM domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FVA6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.270e-13
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query:    1 RFERIETLPGLPEEETARKILESLAADPGVRAVLEKHRWTVGALCELYPE 150
            +F  IETLPGLP E TAR IL SLA+DPG+ AVL  H+W VGAL E+YP+
Sbjct:  123 KFRDIETLPGLPNEPTARNILVSLASDPGILAVLAHHKWQVGALVEMYPD 172

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BLAST of mRNA_E-fasciculatus_F_contig13172.2392.1 vs. uniprot
Match: W4FXC0_9STRA (WLM domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FXC0_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.320e-13
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query:    1 RFERIETLPGLPEEETARKILESLAADPGVRAVLEKHRWTVGALCELYPE 150
            +F  IETLPGLP E TAR IL SLA+DPG+ AVL  H+W VGAL E+YP+
Sbjct:  123 KFRDIETLPGLPNEPTARNILVSLASDPGILAVLAHHKWQVGALVEMYPD 172

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BLAST of mRNA_E-fasciculatus_F_contig13172.2392.1 vs. uniprot
Match: A0A024T9X3_9STRA (WLM domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T9X3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.060e-12
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query:    1 RFERIETLPGLPEEETARKILESLAADPGVRAVLEKHRWTVGALCELYPE 150
            +F  IETLP +P E TAR ILESLA DPG+ AVL +H+W VGAL E++P+
Sbjct:  123 KFHAIETLPNMPNEATARNILESLATDPGILAVLAQHKWHVGALVEMFPD 172

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BLAST of mRNA_E-fasciculatus_F_contig13172.2392.1 vs. uniprot
Match: A0A024T9T7_9STRA (WLM domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T9T7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.240e-12
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query:    1 RFERIETLPGLPEEETARKILESLAADPGVRAVLEKHRWTVGALCELYPE 150
            +F  IETLP +P E TAR ILESLA DPG+ AVL +H+W VGAL E++P+
Sbjct:  123 KFHAIETLPNMPNEATARNILESLATDPGILAVLAQHKWHVGALVEMFPD 172

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BLAST of mRNA_E-fasciculatus_F_contig13172.2392.1 vs. uniprot
Match: W7TIG9_9STRA (Ubiquitin-associated/translation elongation factor EF1B n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIG9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.080e-12
Identity = 29/49 (59.18%), Postives = 41/49 (83.67%), Query Frame = 1

Query:    4 FERIETLPGLPEEETARKILESLAADPGVRAVLEKHRWTVGALCELYPE 150
            F+ IE LP LP+++ AR+IL  LA+DPGV  V+E+++W+VGALCE+YPE
Sbjct:  134 FQSIEVLPHLPDQDMARRILTDLASDPGVLLVMERYKWSVGALCEMYPE 182

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BLAST of mRNA_E-fasciculatus_F_contig13172.2392.1 vs. uniprot
Match: A0A485K3C6_9STRA (Aste57867_599 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K3C6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.190e-12
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1

Query:    1 RFERIETLPGLPEEETARKILESLAADPGVRAVLEKHRWTVGALCELYPE 150
            +F  IETLP LP+E TAR IL++LA DPG+ AVL +H+W VGAL E++P+
Sbjct:  116 KFHGIETLPNLPDEATARNILDTLAQDPGILAVLAQHKWQVGALAEMFPD 165

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BLAST of mRNA_E-fasciculatus_F_contig13172.2392.1 vs. uniprot
Match: A0A6G0WTL6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTL6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.820e-12
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:    1 RFERIETLPGLPEEETARKILESLAADPGVRAVLEKHRWTVGALCELYPE 150
            +F  IETLP LP+E  AR ILE+LA DPG+ AVL KH+W VG L E++P+
Sbjct:  115 KFHAIETLPNLPDEAIARNILETLAQDPGILAVLAKHKWQVGTLAEMFPD 164

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BLAST of mRNA_E-fasciculatus_F_contig13172.2392.1 vs. uniprot
Match: A0A7S1TNB9_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TNB9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-11
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1

Query:    4 FERIETLPGLPEEETARKILESLAADPGVRAVLEKHRWTVGALCELYPE 150
            F RI TLPGLP EE AR ILE LA+DPGV AV++K  W V  LCE+YPE
Sbjct:  138 FGRIVTLPGLPGEERARNILEGLASDPGVLAVMKKWNWFVPELCEMYPE 186

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig13172.2392.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig13172.2392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FR84_ECTSI	2.010e-24	100.00	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7S3XML3_HETAK	2.230e-16	72.00	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
W4FVA6_9STRA	5.270e-13	66.00	WLM domain-containing protein n=1 Tax=Aphanomyces ...	[more]
W4FXC0_9STRA	6.320e-13	66.00	WLM domain-containing protein n=2 Tax=Aphanomyces ...	[more]
A0A024T9X3_9STRA	2.060e-12	62.00	WLM domain-containing protein n=1 Tax=Aphanomyces ...	[more]
A0A024T9T7_9STRA	2.240e-12	62.00	WLM domain-containing protein n=1 Tax=Aphanomyces ...	[more]
W7TIG9_9STRA	3.080e-12	59.18	Ubiquitin-associated/translation elongation factor...	[more]
A0A485K3C6_9STRA	4.190e-12	60.00	Aste57867_599 protein n=1 Tax=Aphanomyces stellatu...	[more]
A0A6G0WTL6_9STRA	7.820e-12	60.00	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
A0A7S1TNB9_9STRA	1.070e-11	67.35	Hypothetical protein n=2 Tax=Phaeomonas parva TaxI...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig13172	contig	E-fasciculatus_F_contig13172:2..151 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	104.8
Seed ortholog evalue	1.2e-20
Seed eggNOG ortholog	2880.D7FR84
GOs	GO:0003674,GO:0003824,GO:0005488,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009987,GO:0016787,GO:0016925,GO:0018193,GO:0018205,GO:0019538,GO:0032446,GO:0033554,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044877,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0070011,GO:0070628,GO:0070647,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.	metallopeptidase activity
EggNOG OGs	KOG4842@1,KOG4842@2759
COG Functional cat.	U
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	150
Cds size	150
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927820.421075-CDS-E-fasciculatus_F_contig13172:1..151	1622927820.421075-CDS-E-fasciculatus_F_contig13172:1..151	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig13172 2..151 -
1695995708.7646897-CDS-E-fasciculatus_F_contig13172:1..151	1695995708.7646897-CDS-E-fasciculatus_F_contig13172:1..151	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig13172 2..151 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig13172.2392.1	prot_E-fasciculatus_F_contig13172.2392.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig13172 2..151 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig13172:2..151-
coding sequence from alignment at E-fasciculatus_F_contig13172:2..151-

protein sequence of mRNA_E-fasciculatus_F_contig13172.2392.1

>prot_E-fasciculatus_F_contig13172.2392.1 ID=prot_E-fasciculatus_F_contig13172.2392.1|Name=mRNA_E-fasciculatus_F_contig13172.2392.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=50bp
RFERIETLPGLPEEETARKILESLAADPGVRAVLEKHRWTVGALCELYPE

mRNA from alignment at E-fasciculatus_F_contig13172:2..151-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig13172.2392.1 ID=mRNA_E-fasciculatus_F_contig13172.2392.1|Name=mRNA_E-fasciculatus_F_contig13172.2392.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=150bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13172:2..151- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTTCGAGCGCATCGAGACCCTCCCCGGGCTGCCCGAGGAAGAAACCGC
CAGGAAAATTCTGGAGTCGTTGGCGGCGGACCCGGGGGTGCGCGCGGTGC
TGGAGAAGCACCGGTGGACCGTGGGCGCCCTCTGCGAGCTGTACCCGGAG

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13172:2..151-

>mRNA_E-fasciculatus_F_contig13172.2392.1 ID=mRNA_E-fasciculatus_F_contig13172.2392.1|Name=mRNA_E-fasciculatus_F_contig13172.2392.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=300bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13172:2..151- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTTCGAGCGCATCGAGACCCTCCCCGGGCTGCCCGAGGAAGAAACCGC
CAGGAAAATTCTGGAGTCGTTGGCGGCGGACCCGGGGGTGCGCGCGGTGC
TGGAGAAGCACCGGTGGACCGTGGGCGCCCTCTGCGAGCTGTACCCGGAG
AGGTTCGAGCGCATCGAGACCCTCCCCGGGCTGCCCGAGGAAGAAACCGC
CAGGAAAATTCTGGAGTCGTTGGCGGCGGACCCGGGGGTGCGCGCGGTGC
TGGAGAAGCACCGGTGGACCGTGGGCGCCCTCTGCGAGCTGTACCCGGAG