mRNA_E-fasciculatus_F_contig13139.2374.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13139.2374.1
Unique NamemRNA_E-fasciculatus_F_contig13139.2374.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13139.2374.1 vs. uniprot
Match: A0A6H5JXE6_9PHAE (Calcium-transporting ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXE6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 5.450e-22
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:   16 PPQGWIDGVAILMAVLIVALVTAGNDYSKELQFRALEKTSEEGVRVMVLRDG 171
            P  GWIDGVAIL+AVLIVALVTAGNDYSKELQFRALEKTSEEG+RVMVLRDG
Sbjct:  149 PDVGWIDGVAILIAVLIVALVTAGNDYSKELQFRALEKTSEEGIRVMVLRDG 200
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BLAST of mRNA_E-fasciculatus_F_contig13139.2374.1 vs. uniprot
Match: A0A835ZLB8_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLB8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.410e-16
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:   16 PPQGWIDGVAILMAVLIVALVTAGNDYSKELQFRALEKTSEEGVRVMVLRDG 171
            P  GWI+G AIL+AVLIVA VTAGNDYSKELQFRALEK+SEE  R +VLR G
Sbjct:  178 PGHGWIEGTAILIAVLIVAFVTAGNDYSKELQFRALEKSSEESERALVLRHG 229
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BLAST of mRNA_E-fasciculatus_F_contig13139.2374.1 vs. uniprot
Match: A0A835ZDK6_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.410e-16
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   10 TTPPQGWIDGVAILMAVLIVALVTAGNDYSKELQFRALEKTSEEGVRVMVLRDG 171
            T P  GWI+G AIL+AV IVA+VTA NDYSKELQFRALEKTSEE  R +VLR+G
Sbjct:  196 TEPGHGWIEGTAILIAVFIVAIVTATNDYSKELQFRALEKTSEESERALVLRNG 249
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BLAST of mRNA_E-fasciculatus_F_contig13139.2374.1 vs. uniprot
Match: A0A7S2STW0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STW0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.510e-13
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   22 QGWIDGVAILMAVLIVALVTAGNDYSKELQFRALEKTSEEGVRVMVLRDG 171
             GWI+GVAI MAV IVA+VTA NDY+KELQFR+LEKTS+E  R  + R G
Sbjct:  158 HGWIEGVAIFMAVFIVAIVTATNDYTKELQFRSLEKTSQETQRCSIFRSG 207
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BLAST of mRNA_E-fasciculatus_F_contig13139.2374.1 vs. uniprot
Match: A0A7S2XZN2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZN2_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.180e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   22 QGWIDGVAILMAVLIVALVTAGNDYSKELQFRALEKTSEEGVRVMVLRDG 171
            +GWI+G AIL AVLIVA+VTA NDY+KELQFRALE  S +  +V V+R G
Sbjct:  125 KGWIEGTAILAAVLIVAVVTAVNDYTKELQFRALESASRQDEQVSVIRSG 174
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BLAST of mRNA_E-fasciculatus_F_contig13139.2374.1 vs. uniprot
Match: A0A7S2VWE4_9STRA (Calcium-transporting ATPase n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWE4_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.840e-12
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   16 PPQGWIDGVAILMAVLIVALVTAGNDYSKELQFRALEKTSEEGVRVMVLRDG 171
            P +GWI+G AIL+AV +VA+VTA NDY KELQFR LEK SE   R  V+R+G
Sbjct:  156 PDKGWIEGCAILLAVFLVAIVTATNDYQKELQFRNLEKNSEGMERCSVIRNG 207
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BLAST of mRNA_E-fasciculatus_F_contig13139.2374.1 vs. uniprot
Match: A0A2G9TXW5_TELCI (E1-E2 ATPase (Fragment) n=2 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9TXW5_TELCI)

HSP 1 Score: 67.0 bits (162), Expect = 1.450e-11
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 PPCTTPPQGWIDGVAILMAVLIVALVTAGNDYSKELQFRALEKTSEEGVRVMVLRDG 171
            PP       WI+GVAIL+ V++V LVTAGNDYSKE QFR+L++  E G +  V+RDG
Sbjct:  184 PPSEGHGTAWIEGVAILLCVVVVVLVTAGNDYSKERQFRSLQEKIETGQKFSVIRDG 240
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BLAST of mRNA_E-fasciculatus_F_contig13139.2374.1 vs. uniprot
Match: A0A158QPR4_HAEPC (Calcium-transporting ATPase n=3 Tax=Haemonchus TaxID=6288 RepID=A0A158QPR4_HAEPC)

HSP 1 Score: 67.0 bits (162), Expect = 1.460e-11
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 PPCTTPPQGWIDGVAILMAVLIVALVTAGNDYSKELQFRALEKTSEEGVRVMVLRDG 171
            PP       WI+GVAIL+ V++V LVTAGNDYSKE QFR+L++  E G +  V+RDG
Sbjct:  167 PPTEGHGTAWIEGVAILLCVVVVVLVTAGNDYSKERQFRSLQEKIETGQKFSVIRDG 223
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BLAST of mRNA_E-fasciculatus_F_contig13139.2374.1 vs. uniprot
Match: A0A7S3HTD8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTD8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.810e-11
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   10 TTPPQGWIDGVAILMAVLIVALVTAGNDYSKELQFRALEKTSEEGVRVMVLRDG 171
            T P  GWI+G AI +AV +V+ ++AGNDYSK+LQF+ALE +S +  R  VLR+G
Sbjct:  124 TEPENGWIEGTAIFIAVFLVSNISAGNDYSKQLQFKALEHSSAKDERTSVLREG 177
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BLAST of mRNA_E-fasciculatus_F_contig13139.2374.1 vs. uniprot
Match: W7TSK5_9STRA (Calcium-transporting ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSK5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.000e-11
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   16 PPQGWIDGVAILMAVLIVALVTAGNDYSKELQFRALEKTSEEGVRVMVLRDG 171
            P  GWI+G AI++A++IVA VTA N+Y+KELQFR+LE TS++  RV + R G
Sbjct:  140 PHDGWIEGTAIMVAIMIVATVTASNNYNKELQFRSLEATSKKDERVFIKRSG 191
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13139.2374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXE6_9PHAE5.450e-2292.31Calcium-transporting ATPase n=2 Tax=Ectocarpus Tax... [more]
A0A835ZLB8_9STRA1.410e-1676.92Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
A0A835ZDK6_9STRA1.410e-1674.07Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
A0A7S2STW0_9STRA2.510e-1368.00Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A7S2XZN2_9STRA4.180e-1266.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2VWE4_9STRA7.840e-1263.46Calcium-transporting ATPase n=1 Tax=Triparma pacif... [more]
A0A2G9TXW5_TELCI1.450e-1156.14E1-E2 ATPase (Fragment) n=2 Tax=Teladorsagia circu... [more]
A0A158QPR4_HAEPC1.460e-1156.14Calcium-transporting ATPase n=3 Tax=Haemonchus Tax... [more]
A0A7S3HTD8_9STRA1.810e-1155.56Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
W7TSK5_9STRA2.000e-1157.69Calcium-transporting ATPase n=2 Tax=Monodopsidacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13139contigE-fasciculatus_F_contig13139:3170..3340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue1.3e-18
Seed eggNOG ortholog2880.D7G3Y5
KEGG koko:K01537,ko:K05850
KEGG TC3.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04261,ko04925,ko04970,ko04972,map04020,map04022,map04024,map04261,map04925,map04970,map04972
EggNOG free text desc.calcium-transporting ATPase activity
EggNOG OGsCOG0474@1,KOG0204@2759
EC3.6.3.8
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927818.365009-CDS-E-fasciculatus_F_contig13139:3169..33401622927818.365009-CDS-E-fasciculatus_F_contig13139:3169..3340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13139 3170..3340 +
1695995707.6593575-CDS-E-fasciculatus_F_contig13139:3169..33401695995707.6593575-CDS-E-fasciculatus_F_contig13139:3169..3340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13139 3170..3340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13139.2374.1prot_E-fasciculatus_F_contig13139.2374.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13139 3170..3340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13139.2374.1

>prot_E-fasciculatus_F_contig13139.2374.1 ID=prot_E-fasciculatus_F_contig13139.2374.1|Name=mRNA_E-fasciculatus_F_contig13139.2374.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=57bp
PPCTTPPQGWIDGVAILMAVLIVALVTAGNDYSKELQFRALEKTSEEGVR
VMVLRDG
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mRNA from alignment at E-fasciculatus_F_contig13139:3170..3340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13139.2374.1 ID=mRNA_E-fasciculatus_F_contig13139.2374.1|Name=mRNA_E-fasciculatus_F_contig13139.2374.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=171bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13139:3170..3340+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTCCGTGCACCACGCCGCCTCAGGGATGGATCGATGGAGTCGCGATTCT
GATGGCCGTGCTTATCGTGGCCCTTGTGACGGCCGGCAACGACTACAGCA
AGGAGCTGCAGTTCCGTGCGTTGGAGAAGACTTCGGAGGAGGGAGTTAGG
GTCATGGTTCTCAGGGATGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13139:3170..3340+

>mRNA_E-fasciculatus_F_contig13139.2374.1 ID=mRNA_E-fasciculatus_F_contig13139.2374.1|Name=mRNA_E-fasciculatus_F_contig13139.2374.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13139:3170..3340+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTCCGTGCACCACGCCGCCTCAGGGATGGATCGATGGAGTCGCGATTCT
GATGGCCGTGCTTATCGTGGCCCTTGTGACGGCCGGCAACGACTACAGCA
AGGAGCTGCAGTTCCGTGCGTTGGAGAAGACTTCGGAGGAGGGAGTTAGG
GTCATGGTTCTCAGGGATGGCCCTCCGTGCACCACGCCGCCTCAGGGATG
GATCGATGGAGTCGCGATTCTGATGGCCGTGCTTATCGTGGCCCTTGTGA
CGGCCGGCAACGACTACAGCAAGGAGCTGCAGTTCCGTGCGTTGGAGAAG
ACTTCGGAGGAGGGAGTTAGGGTCATGGTTCTCAGGGATGGC
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