mRNA_E-fasciculatus_F_contig13123.2367.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13123.2367.1
Unique NamemRNA_E-fasciculatus_F_contig13123.2367.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13123.2367.1 vs. uniprot
Match: D7FHD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD6_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.580e-35
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:    1 YVIEYTPVLAGNFSAEVLVAGAMILPPTGSMGDITILPAFAGLRGKLQVNESGVAGVQHRVTATPSDAFGNAIDPSN 231
            YVIEYTPVLAGNFSAEVLVAGAMI PP+GSMGD+T+LP+F GLRGKLQV+ESGVAGVQHRVTATPSD +GN IDPSN
Sbjct:  922 YVIEYTPVLAGNFSAEVLVAGAMI-PPSGSMGDVTVLPSFEGLRGKLQVDESGVAGVQHRVTATPSDEYGNVIDPSN 997
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BLAST of mRNA_E-fasciculatus_F_contig13123.2367.1 vs. uniprot
Match: A0A6H5LGQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGQ6_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.290e-26
Identity = 62/102 (60.78%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:    1 YVIEYTPVLAGNFSAEVLVAGAMILPPTGSMGDITILPAFAGLRGKLQVNE-------------------------SGVAGVQHRVTATPSDAFGNAIDPSN 231
            YVIEYTPVLAG+FSA+VLVAGAMI P +GSMG++TILP+FAGLRGKLQV++                         SGVAGVQH VT TPSD +GN IDPSN
Sbjct:  838 YVIEYTPVLAGDFSAKVLVAGAMI-PLSGSMGEVTILPSFAGLRGKLQVDKGAVQDLKDSRPTLFSADAPFLSIEKSGVAGVQHHVTVTPSDEYGNVIDPSN 938
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BLAST of mRNA_E-fasciculatus_F_contig13123.2367.1 vs. uniprot
Match: D7FHC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC7_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 8.400e-16
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 YVIEYTPVLAGNFSAEVLVAGAMILPPTGSMGDITILPAFAGLRG 135
            YVIEYTPVLAGNFSAEVLVAGAMI PP+GSMGD+T+LP+F GLRG
Sbjct:  474 YVIEYTPVLAGNFSAEVLVAGAMI-PPSGSMGDVTVLPSFEGLRG 517
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13123.2367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHD6_ECTSI1.580e-3587.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LGQ6_9PHAE1.290e-2660.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHC7_ECTSI8.400e-1686.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13123contigE-fasciculatus_F_contig13123:27..762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue5.8e-30
Seed eggNOG ortholog2880.D7FHD6
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927817.634654-CDS-E-fasciculatus_F_contig13123:26..1791622927817.634654-CDS-E-fasciculatus_F_contig13123:26..179Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13123 27..179 +
1695995707.2409563-CDS-E-fasciculatus_F_contig13123:26..1791695995707.2409563-CDS-E-fasciculatus_F_contig13123:26..179Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13123 27..179 +
1622927817.6439552-CDS-E-fasciculatus_F_contig13123:683..7611622927817.6439552-CDS-E-fasciculatus_F_contig13123:683..761Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13123 684..761 +
1695995707.2530475-CDS-E-fasciculatus_F_contig13123:683..7611695995707.2530475-CDS-E-fasciculatus_F_contig13123:683..761Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13123 684..761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13123.2367.1prot_E-fasciculatus_F_contig13123.2367.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13123 27..761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13123.2367.1

>prot_E-fasciculatus_F_contig13123.2367.1 ID=prot_E-fasciculatus_F_contig13123.2367.1|Name=mRNA_E-fasciculatus_F_contig13123.2367.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=77bp
YVIEYTPVLAGNFSAEVLVAGAMILPPTGSMGDITILPAFAGLRGKLQVN
ESGVAGVQHRVTATPSDAFGNAIDPSN
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mRNA from alignment at E-fasciculatus_F_contig13123:27..762+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13123.2367.1 ID=mRNA_E-fasciculatus_F_contig13123.2367.1|Name=mRNA_E-fasciculatus_F_contig13123.2367.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=736bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13123:27..762+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACGTGATCGAGTACACCCCGGTACTCGCCGGGAATTTCTCCGCCGAAGT
GCTCGTCGCCGGCGCCATGATCCTCCCACCGACGGGGTCGATGGGAGACA
TCACCATCCTGCCGGCGTTCGCAGGTCTCAGGGGGAAACTCCAAGTGAAC
GAGGTGAGAAGTAGTGCAACGGAAATAATTGTACTCGGTGAAGGTCGTAG
GAAGCTCAGGACAGGTTTTTCAACACACGCTCGCTTATGGATTAATCTCG
CAAGACCGCAAAAATGCACGTGGTTGGTTGCTGTTCGGTCTCATTTCCCC
CTCTCAGAGGCGGGCATCCCCGCCCCCCCGTTAGGAGTACCTAGTTCAGG
GAGCGGTTCAGGACTTGAAAGGTAGGACTAAAGGTGTTGCATCCGGCACT
TGGCATATGATTTAACGGCAAAGGGGTGTGGAGTGAACGCAGCCTTCAAG
ACAGCGGAGCGGCTAACGACGTGACTGTCCGCCACGAGCATCCTGACTTT
GTGCTAGGAGTAGGCGATACTGCAGTGTTATGACGTCGACGGCAAGGTCG
ACACGTTCCTCTTCCTGCAGGGATCCCGTACACCCCTACAGTGCGAAACC
GTAGACTCACGTCCAATTTTCTGTTCTGTCGATGCACCCTTCCTTCAAAT
CGATCAGTCCGGGGTTGCTGGAGTCCAGCACCGCGTCACGGCCACCCCCA
GTGACGCTTTCGGCAACGCCATCGACCCGAGCAACC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13123:27..762+

>mRNA_E-fasciculatus_F_contig13123.2367.1 ID=mRNA_E-fasciculatus_F_contig13123.2367.1|Name=mRNA_E-fasciculatus_F_contig13123.2367.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=462bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13123:27..762+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACGTGATCGAGTACACCCCGGTACTCGCCGGGAATTTCTCCGCCGAAGT
GCTCGTCGCCGGCGCCATGATCCTCCCACCGACGGGGTCGATGGGAGACA
TCACCATCCTGCCGGCGTTCGCAGGTCTCAGGGGGAAACTCCAAGTGAAC
GAGTACGTGATCGAGTACACCCCGGTACTCGCCGGGAATTTCTCCGCCGA
AGTGCTCGTCGCCGGCGCCATGATCCTCCCACCGACGGGGTCGATGGGAG
ACATCACCATCCTGCCGGCGTTCGCAGGTCTCAGGGGGAAACTCCAAGTG
AACGAGTCCGGGGTTGCTGGAGTCCAGCACCGCGTCACGGCCACCCCCAG
TGACGCTTTCGGCAACGCCATCGACCCGAGCAACTCCGGGGTTGCTGGAG
TCCAGCACCGCGTCACGGCCACCCCCAGTGACGCTTTCGGCAACGCCATC
GACCCGAGCAAC
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