mRNA_E-fasciculatus_F_contig1025.231.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1025.231.1
Unique NamemRNA_E-fasciculatus_F_contig1025.231.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1025.231.1 vs. uniprot
Match: A0A6H5L9E1_9PHAE (Calmodulin-lysine N-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9E1_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 1.920e-115
Identity = 178/210 (84.76%), Postives = 186/210 (88.57%), Query Frame = 1
Query:   82 MSDSGSSVRGKGGGKWSTLRDAFLSAVAASKGEQHAKERGGNGASDRTTSSRFEGFVLFPRQEIDPPSSVAAATPTATTTIQPGSVWATYQLPHRKKVTTREASSKRRAGVGGVAITLDQLFAHRVHGVDNTGNVRVWPAEHVLLHVLLTSPLASSLGGMRVLELGAGMSGLAGLGVAACSDAAEVVITDGNPDALRNVEVQLRTHRGIF 711
            M DSG+SVRG GGGKWSTLRDAFL AVAASK   HA E GGNGA+D T SSRFEGFVLFPRQEIDP S+VAAAT TATT I PG+VWATY LP  KKVTTREASS  RAG GGV +TLDQLFAHRVHGVDNTGNVRVWPAEHVLLHVLL+SPLASSLGGMRVLELGAGMSGLAGLGVAAC DAAEVVITDGNPDALRN+EVQ R HRG+F
Sbjct:    1 MCDSGTSVRGNGGGKWSTLRDAFLCAVAASK-RGHATETGGNGANDSTISSRFEGFVLFPRQEIDPTSAVAAATQTATTAIHPGNVWATYHLPGGKKVTTREASSNGRAGAGGVTVTLDQLFAHRVHGVDNTGNVRVWPAEHVLLHVLLSSPLASSLGGMRVLELGAGMSGLAGLGVAACLDAAEVVITDGNPDALRNLEVQQRAHRGLF 209          
BLAST of mRNA_E-fasciculatus_F_contig1025.231.1 vs. uniprot
Match: D8LSL3_ECTSI (Phosphoribulokinase/uridine kinase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSL3_ECTSI)

HSP 1 Score: 343 bits (880), Expect = 3.030e-113
Identity = 182/212 (85.85%), Postives = 190/212 (89.62%), Query Frame = 1
Query:   82 MSDSGSSVRGKGGGKWSTLRDAFLSAVAASKGEQHAKERGGNGASDRTTSSRFEGFVLFPRQEIDPPSSVAAATPTATTTIQPGSVWATYQLPHRKKVTTREASSKRRAGVGGVAITLDQLFAHRVHGVDNTGNVRVWPAEHVLLHVLLTSPLASSLGGMRVLELGAGMSGLAGLGVAACSDAAEVVITDGNPDALRNVE--VQLRTHRGIF 711
            M D+G  VRG GGGKWSTLRDAFLSAVAASKGE HA E GGNGA D TTSSRFEGFVLFPRQEIDP S+VAAATPTATTTIQPG+VWATY LPH KKVTTR+ASSKRRAG GGV ITLDQLFAHRVHGVDNTGNVRVWPAEHVLLHVLL+SPLASSLGGMRVLELGAGMSGLAGLGVAACSDA EVVITDGNPDALR +E  V+L    G+F
Sbjct:    1 MCDTGDFVRGNGGGKWSTLRDAFLSAVAASKGE-HATEVGGNGARDSTTSSRFEGFVLFPRQEIDPTSAVAAATPTATTTIQPGNVWATYHLPHGKKVTTRDASSKRRAGAGGVTITLDQLFAHRVHGVDNTGNVRVWPAEHVLLHVLLSSPLASSLGGMRVLELGAGMSGLAGLGVAACSDAGEVVITDGNPDALRTLEECVELNAKEGVF 211          
BLAST of mRNA_E-fasciculatus_F_contig1025.231.1 vs. uniprot
Match: A0A835Z8K9_9STRA (Calmodulin-lysine N-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8K9_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.550e-23
Identity = 65/126 (51.59%), Postives = 85/126 (67.46%), Query Frame = 1
Query:  343 ATYQLPHRK-KVTTREASSKRRAGVGGVAITLDQLFAHRVHGVDNTGNVRVWPAEHVLLHVLLTSPLASSLGGMRVLELGAGMSGLAGLGVAACSDAAE--VVITDGNPDALRNVEVQLRTHRGIF 711
            ATYQLP    ++  RE +++RR        TL ++F+HRVHGVDNTGNVRVWP+E +LLH L+++P A    G RVLE+G GM+ LAGLGVAA +      VV+TDG+PDA+R   V  R +R  F
Sbjct:  154 ATYQLPGGGGQLCVRERAARRRT-------TLAEIFSHRVHGVDNTGNVRVWPSESLLLHHLVSTPGAIP-AGARVLEIGGGMTALAGLGVAAAAGCRVRCVVVTDGHPDAVRGQRVCARLNRHAF 271          
BLAST of mRNA_E-fasciculatus_F_contig1025.231.1 vs. uniprot
Match: A0A329SXQ8_9STRA (Calmodulin-lysine N-methyltransferase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SXQ8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.310e-15
Identity = 68/203 (33.50%), Postives = 107/203 (52.71%), Query Frame = 1
Query:  127 WSTLRDAFLSAVAASKGEQHAKERGGNGASDRTTSSRFEGFVLFPRQEIDPPSSVAAATPTATTTIQPGSVWATYQLP-----HRKKVTTREASSKRRAGVGGVAITLDQLFAHRVH-GVDNTGNVRVWPAEHVLLHVLLTSPLASSL-----GG----MRVLELGAGMSGLAGLGVAACS--DAAEVVITDGNPDALRNVEV 684
            W  LR+A L + +      +      N      +S   E F L+P   +D  + V  ++P      Q   VW  Y L        +++TT     KR+  V  V+IT  +L +H+V+ GVDNTGN+R WP+E +LL  +L+S + S +     GG    +   ELG+GM+GLA LG+ AC+  D   V++TDGNP +++N+++
Sbjct:   13 WRVLRNALLRSTS------NRASASTNATGTTASSIATEFFPLYPETSVDT-AKVQMSSPA-----QENFVWMAYDLSAAIDNQTERITTVLVHEKRK-DVKRVSIT--ELLSHQVNEGVDNTGNIRTWPSEQILLSYMLSSGVCSQVQRQGAGGDLLPVTCCELGSGMAGLASLGLLACAPVDFERVMVTDGNPLSVKNLQL 200          
BLAST of mRNA_E-fasciculatus_F_contig1025.231.1 vs. uniprot
Match: M4C179_HYAAE (Calmodulin-lysine N-methyltransferase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C179_HYAAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.220e-15
Identity = 71/214 (33.18%), Postives = 103/214 (48.13%), Query Frame = 1
Query:  127 WSTLRDAFLSAVAASKGEQHAKERGGNGASDRTTSSRFEGFVLFPRQEIDPPSSVAAATPTATTTIQPGSVWATYQL---------PHRKKVTTREASSKRRAGVGGVAITLDQLFAHRVH-GVDNTGNVRVWPAEHVLLHVLLTSPLASSLGGMR----------VLELGAGMSGLAGLGVAACSDAA--EVVITDGNPDALRNVEVQLRTHR 702
            W  LR A L +++ ++            AS  T S+  E F  +P+  +D                QP  VW TY+L         P  KK   R    ++R  V  V +T  +L +HRV+ GVDNTGN+R WP+E +LL  LL+S + S +   R            ELG+GM GLA LG+ AC   A   V++TDGNP  ++N+ V +  ++
Sbjct:   13 WRVLRTALLQSMSPTR------------ASTSTESTASEFFPRYPKVLVDNIQG------------QPNWVWMTYELGASLSNANNPLLKK---RVYVHEKRKDVTRVPVT--ELLSHRVYQGVDNTGNIRTWPSEEILLAYLLSSGVCSQVQQQRDAADELLPIACCELGSGMVGLASLGLLACGPVALQRVLVTDGNPLCVQNLHVCMEENK 197          
BLAST of mRNA_E-fasciculatus_F_contig1025.231.1 vs. uniprot
Match: A0A8J5ILV0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5ILV0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.850e-15
Identity = 68/203 (33.50%), Postives = 107/203 (52.71%), Query Frame = 1
Query:  127 WSTLRDAFLSAVAASKGEQHAKERGGNGASDRTTSSRFEGFVLFPRQEIDPPSSVAAATPTATTTIQPGSVWATYQLP-----HRKKVTTREASSKRRAGVGGVAITLDQLFAHRVH-GVDNTGNVRVWPAEHVLLHVLLTSPLASSL-----GG----MRVLELGAGMSGLAGLGVAACS--DAAEVVITDGNPDALRNVEV 684
            W  LR+A L + +      +      N      +S   E F L+P   +D  + V  ++P      Q   VW TY L        +++TT     KR+  V  V+I   +L +H+V+ GVDNTGN+R WP+E +LL  +L+S + S +     GG    +   ELG+GM+GLA LG+ AC+  D   V++TDGNP +++N+++
Sbjct:   13 WRVLRNALLRSTS------NRASASTNATGTTASSIATEFFPLYPETSVDT-AKVQMSSPA-----QENFVWMTYDLSAAIDNQTERITTVLVHEKRK-DVKRVSIA--ELLSHQVNEGVDNTGNIRTWPSEQILLSYMLSSGVCSQVQRQGAGGDLLPVTCCELGSGMAGLASLGLLACAPVDFERVMVTDGNPLSVKNLQL 200          
BLAST of mRNA_E-fasciculatus_F_contig1025.231.1 vs. uniprot
Match: H3GZU6_PHYRM (Calmodulin-lysine N-methyltransferase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GZU6_PHYRM)

HSP 1 Score: 80.1 bits (196), Expect = 6.670e-14
Identity = 65/204 (31.86%), Postives = 103/204 (50.49%), Query Frame = 1
Query:  127 WSTLRDAFLSAVAASKGEQHAKERGGNGASDRTTSSRFEGFVLFPRQEIDPPSSVAAATPTATTTIQPGSVWATYQLP-----HRKKVTTREASSKRRAGVGGVAITLDQLFAHRVH-GVDNTGNVRVWPAEHVLLHVLLTSPLASSLGG----------MRVLELGAGMSGLAGLGVAACS--DAAEVVITDGNPDALRNVEV 684
            W  LR+A L + ++      A   G   AS   T    E F L+  + +D  + V   +P      Q    W  Y L      H  +++      ++R  V  V+I   +L +H+V+ GVDNTGN+R WP+E +LL  +L+S + S +            +   ELG+GM+GLA LG+ AC+  D   VV+TDGNP +++N+++
Sbjct:   14 WRVLRNALLRSTSSGPPSSPADATGSATASSIAT----EFFPLYLARPVDT-AQVQIRSPA-----QENFAWMAYDLSAASNKHTGRLSATVYVHEKRKDVKRVSIA--ELLSHKVNEGVDNTGNIRTWPSEQILLSYMLSSGVCSQVQRRGSEDGAPLPISCCELGSGMAGLASLGLLACATTDLERVVVTDGNPLSIKNLQL 205          
BLAST of mRNA_E-fasciculatus_F_contig1025.231.1 vs. uniprot
Match: W2PKL1_PHYPN (Calmodulin-lysine N-methyltransferase n=8 Tax=Phytophthora TaxID=4783 RepID=W2PKL1_PHYPN)

HSP 1 Score: 79.3 bits (194), Expect = 1.110e-13
Identity = 67/208 (32.21%), Postives = 108/208 (51.92%), Query Frame = 1
Query:  127 WSTLRDAFLSAVAASKGEQHAKERGGNGASDRTTSSRFEGFVLFPRQEIDPPSSVAAATPTATTTIQPGSVWATYQLPHRKKVTTREASS----KRRAGVGGVAITLDQLFAHRVH-GVDNTGNVRVWPAEHVLLHVLLTSPLASSL-----GG----MRVLELGAGMSGLAGLGVAACS--DAAEVVITDGNPDALRNVEVQLRTHR 702
            W  L++A L +   S G     +  G+ AS   T    E F L+P   +D  + V  ++P      Q   +W  Y L          +S     ++R  V  V+I   +L +H+V+ GVDNTGN+R WP+E +LL  +L+S + S +     GG    +   ELG+GM+GLA  G+ AC+  D   VV+TDGNP +++N+++ +  ++
Sbjct:   13 WRVLQNALLRST--SNGAPAPVDATGSTASSIAT----EFFPLYPETPVDT-AKVQMSSPA-----QENFMWMAYDLSSTTNKQVDRSSKVFVHEKRKDVKRVSIA--ELLSHKVNEGVDNTGNIRTWPSEQILLSYMLSSGVCSQVQRRGAGGDVLPVMCCELGSGMAGLASQGLLACAPVDFERVVVTDGNPLSVKNLQLCIEENK 206          
BLAST of mRNA_E-fasciculatus_F_contig1025.231.1 vs. uniprot
Match: A0A3M6VGI1_9STRA (Calmodulin-lysine N-methyltransferase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGI1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.110e-13
Identity = 55/144 (38.19%), Postives = 86/144 (59.72%), Query Frame = 1
Query:  322 IQPGSVWATYQLP-HRKKVTTREASS----KRRAGVGGVAITLDQLFAHRVH-GVDNTGNVRVWPAEHVLLHVLLTSPLAS---------SLGGMRVLELGAGMSGLAGLGVAACS--DAAEVVITDGNPDALRNVEVQLRTHR 702
            +Q   VW  Y LP    K T R A+     ++R  V  V+I   +L +H+V+ GVDNTGN+R WP+E VLL  LL+S + S         +L  +   ELG+GM+GLA LG+ AC+  +   V++TDGNP +++N+++ +  ++
Sbjct:   62 VQENWVWMAYDLPCDVNKTTGRRATRVYVHEKRKDVKRVSIA--ELLSHQVNQGVDNTGNIRTWPSEQVLLSYLLSSNVCSRVQQQDTSGNLLPITCCELGSGMAGLASLGLLACAPVELQHVLVTDGNPLSVKNLQLCIEENK 203          
BLAST of mRNA_E-fasciculatus_F_contig1025.231.1 vs. uniprot
Match: A0A8B7YLS7_ACAPL (Calmodulin-lysine N-methyltransferase n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YLS7_ACAPL)

HSP 1 Score: 77.8 bits (190), Expect = 2.310e-13
Identity = 50/123 (40.65%), Postives = 69/123 (56.10%), Query Frame = 1
Query:  340 WATYQLPHRKK--VTTREASSKRRAGVGGVAITLDQLFAHRVHGVDNTGNVRVWPAEHVLLHVLLTSPLASSLGGMRVLELGAGMSGLAGLGVAACSDAAEVVITDGNPDALRNVEVQLRTHR 702
            WA Y  PH ++  V+ R  S+                 A  + G +NTGNV VWPAE VL    L +  A S    R+ ELG GM+ LAG+ VA C+DAAEV++TDGN ++++NV+  L  +R
Sbjct:   56 WAEYTCPHYREFSVSIRHLSNN--------------FSASELVGFNNTGNVCVWPAEEVLTFHCLKN--AESFKNQRICELGGGMTCLAGIAVAVCTDAAEVLLTDGNENSVQNVQEILAENR 162          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1025.231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9E1_9PHAE1.920e-11584.76Calmodulin-lysine N-methyltransferase n=1 Tax=Ecto... [more]
D8LSL3_ECTSI3.030e-11385.85Phosphoribulokinase/uridine kinase family protein ... [more]
A0A835Z8K9_9STRA1.550e-2351.59Calmodulin-lysine N-methyltransferase n=1 Tax=Trib... [more]
A0A329SXQ8_9STRA1.310e-1533.50Calmodulin-lysine N-methyltransferase n=1 Tax=Phyt... [more]
M4C179_HYAAE2.220e-1533.18Calmodulin-lysine N-methyltransferase n=1 Tax=Hyal... [more]
A0A8J5ILV0_9STRA3.850e-1533.50Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
H3GZU6_PHYRM6.670e-1431.86Calmodulin-lysine N-methyltransferase n=1 Tax=Phyt... [more]
W2PKL1_PHYPN1.110e-1332.21Calmodulin-lysine N-methyltransferase n=8 Tax=Phyt... [more]
A0A3M6VGI1_9STRA1.110e-1338.19Calmodulin-lysine N-methyltransferase n=2 Tax=Pero... [more]
A0A8B7YLS7_ACAPL2.310e-1340.65Calmodulin-lysine N-methyltransferase n=1 Tax=Acan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1025contigE-fasciculatus_F_contig1025:18572..20552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score347.8
Seed ortholog evalue3.9e-93
Seed eggNOG ortholog2880.D8LSL3
Preferred nameCAMKMT
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K18826,ko:K21804
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006417,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008277,GO:0008757,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0010646,GO:0016043,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018025,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0022400,GO:0023051,GO:0031072,GO:0031323,GO:0031326,GO:0032101,GO:0032259,GO:0032268,GO:0032991,GO:0034248,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:1901564,GO:2000112
EggNOG free text desc.calmodulin-lysine N-methyltransferase activity
EggNOG OGsCOG1072@1,KOG2702@2759,KOG3201@1,KOG3201@2759
EC2.1.1.60
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Hectar predicted targeting categoryother localisation
Exons4
Model size713
Cds size711
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1025.231.1prot_E-fasciculatus_F_contig1025.231.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1025 18572..20552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.1131008-CDS-E-fasciculatus_F_contig1025:18571..188341622927527.1131008-CDS-E-fasciculatus_F_contig1025:18571..18834Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 18572..18834 +
1695995579.0840771-CDS-E-fasciculatus_F_contig1025:18571..188341695995579.0840771-CDS-E-fasciculatus_F_contig1025:18571..18834Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 18572..18834 +
1622927527.1231863-CDS-E-fasciculatus_F_contig1025:19025..191341622927527.1231863-CDS-E-fasciculatus_F_contig1025:19025..19134Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 19026..19134 +
1695995579.098598-CDS-E-fasciculatus_F_contig1025:19025..191341695995579.098598-CDS-E-fasciculatus_F_contig1025:19025..19134Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 19026..19134 +
1622927527.1343637-CDS-E-fasciculatus_F_contig1025:19840..200011622927527.1343637-CDS-E-fasciculatus_F_contig1025:19840..20001Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 19841..20001 +
1695995579.1078959-CDS-E-fasciculatus_F_contig1025:19840..200011695995579.1078959-CDS-E-fasciculatus_F_contig1025:19840..20001Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 19841..20001 +
1622927527.1456876-CDS-E-fasciculatus_F_contig1025:20374..205521622927527.1456876-CDS-E-fasciculatus_F_contig1025:20374..20552Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 20375..20552 +
1695995579.1165097-CDS-E-fasciculatus_F_contig1025:20374..205521695995579.1165097-CDS-E-fasciculatus_F_contig1025:20374..20552Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 20375..20552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1025.231.1

>prot_E-fasciculatus_F_contig1025.231.1 ID=prot_E-fasciculatus_F_contig1025.231.1|Name=mRNA_E-fasciculatus_F_contig1025.231.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=237bp
GQGAASALADSPGVTPRRAATSRRAGIMSDSGSSVRGKGGGKWSTLRDAF
LSAVAASKGEQHAKERGGNGASDRTTSSRFEGFVLFPRQEIDPPSSVAAA
TPTATTTIQPGSVWATYQLPHRKKVTTREASSKRRAGVGGVAITLDQLFA
HRVHGVDNTGNVRVWPAEHVLLHVLLTSPLASSLGGMRVLELGAGMSGLA
GLGVAACSDAAEVVITDGNPDALRNVEVQLRTHRGIF
back to top

mRNA from alignment at E-fasciculatus_F_contig1025:18572..20552+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1025.231.1 ID=mRNA_E-fasciculatus_F_contig1025.231.1|Name=mRNA_E-fasciculatus_F_contig1025.231.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1981bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1025:18572..20552+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGCAAGGAGCAGCATCAGCGCTAGCGGACTCACCGGGTGTCACACCACG TCGCGCGGCCACGTCCCGTAGAGCGGGCATCATGAGCGACAGTGGTTCTT CTGTTCGAGGTAAGGGAGGTGGCAAGTGGTCGACCCTGCGGGACGCGTTT CTCTCTGCGGTGGCAGCGTCCAAAGGAGAGCAACATGCCAAAGAGCGGGG CGGCAACGGGGCAAGTGACCGCACCACGTCCTCGAGGTTCGAGGGCTTCG TTCTTTTCCCCAGGTGTGTTGTGCACAGAGGACATGCGTTTGTCCCCATC CTGCTCGAGAGTCATTGGAGGCTCCCACCTTCCTTGTACAGATAGATCCA TCCATCTCTCTTTCGCATTCGCACCTCAACTTTATCCCCTCTTTCGCGTT CGCACCTCAACTTGATCGCCGTGCTTCGCAACGAAATCGCGGGTTGCTGG CCAGGCAAGAGATTGATCCACCATCATCAGTAGCGGCAGCTACACCAACT GCAACGACAACCATCCAACCAGGCAGCGTTTGGGCTACGTATCAACTTCC TCACAGGAAAAAGGTGTCTAGTGTCTGCTGTGCTGCAGTAAATCGTTGAA TTTGCAAGTGCATGCCATGCAATTTGATGTCTAGCTACTACCACGAGTCG CGCGTTTTTTACTACTGTAGACCACAGCTGTATTTTGACTGCTGTAGTGC TCTCACGAGCGACTGACTGCACGGTCGCAAAGCGAGAGCTCGACCATATT CAACGCAGCGAGGCCCTCTGTGGAGATCACCTTCGTAAAAGCCTCAATCT CCCAACGTCTGTCGAGGACGATTACCGCTTTTCACATTCGCGTCGACGAA GAGATCCAACAACTCCGTGGCACTGCTGCCGACTATCATGAACGCCTTAT CGCTCTGGAGAGCTTCACCTCCGAGCAGGTTCTTGTCGGAGGTACATAGT GGTGGTGCTGCTGTTGCTGTTGTCATTGCTGTTGCCGAGGTGGGGATCGA TCGGCGTGGGAAGCCACGATATTTAGAGCTAGGTATCCGCTTTCGTTGCT CCAGCTGCACCACCTAAACCAGCAGCACCTACAGTTTAAACAACAGTTAT CGTGGTGGCCAAGATCTAACGCCAACGCTCTCAACCGCTGAGAAAAATTC GCCAATGTTCTTCGACCGCTTCCTCGACTGCCACCGCCTTCACCACCACT ACTGGCACGATTGCCACCACATCCGTGGTGCGCGGCCCACCCTAATGGTT GTCGTTCGTGGCAAATCAGGTCACTACGAGGGAAGCTTCGTCAAAGAGAA GGGCGGGCGTGGGTGGGGTAGCCATCACGCTGGATCAGCTGTTCGCGCAC CGCGTGCACGGCGTCGACAACACGGGCAACGTAAGAGTATGGCCGGCGGA GCACGTTCTTCTCCACGTCTTGCTCACCAGGTCAGTGTTTGCCTTGTTCT TTTCTTTTCTTTCTTGGGCGGATGACCCTTGGCGGCTGCGATGTGCCTTT CGCAAACATGCGGCGAAAAGCGAGTTCATAGTACCGCCTTTGATGTTTTT ACGCTTTGAACCGAGTGAAGTGAAGGGTGATCAAACGAACGTGAAACGCT CAGTTCTTCTCCAAGACATATCTCCTTACACAACCCTTTTCACTGTGCGG GTTGGTTATTCTCCGCACAATTTCTCGCGTTGGCACATACAGACGTCAGC CACCACTCTATCGTCCGACGCCCGTCTCGTTGCCAACTTCCCCCTTGGTT CCCTCGTTCGCGAAAACCTCCTGGTCTTCCTGCCGTTGTCGCTCCGACTA TAGCCCGCTGGCCTCCTCTCTGGGCGGGATGCGGGTGCTGGAGCTCGGGG CGGGCATGTCCGGGTTGGCCGGCCTGGGGGTGGCTGCTTGCTCGGACGCA GCGGAGGTGGTGATCACGGACGGCAACCCGGACGCGCTTAGAAATGTCGA GGTACAGTTACGTACGCACCGTGGCATTTTT
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1025:18572..20552+

>mRNA_E-fasciculatus_F_contig1025.231.1 ID=mRNA_E-fasciculatus_F_contig1025.231.1|Name=mRNA_E-fasciculatus_F_contig1025.231.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1422bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1025:18572..20552+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGCAAGGAGCAGCATCAGCGCTAGCGGACTCACCGGGTGTCACACCACG
TCGCGCGGCCACGTCCCGTAGAGCGGGCATCATGAGCGACAGTGGTTCTT
CTGTTCGAGGTAAGGGAGGTGGCAAGTGGTCGACCCTGCGGGACGCGTTT
CTCTCTGCGGTGGCAGCGTCCAAAGGAGAGCAACATGCCAAAGAGCGGGG
CGGCAACGGGGCAAGTGACCGCACCACGTCCTCGAGGTTCGAGGGCTTCG
TTCTTTTCCCCAGGGGCAAGGAGCAGCATCAGCGCTAGCGGACTCACCGG
GTGTCACACCACGTCGCGCGGCCACGTCCCGTAGAGCGGGCATCATGAGC
GACAGTGGTTCTTCTGTTCGAGGTAAGGGAGGTGGCAAGTGGTCGACCCT
GCGGGACGCGTTTCTCTCTGCGGTGGCAGCGTCCAAAGGAGAGCAACATG
CCAAAGAGCGGGGCGGCAACGGGGCAAGTGACCGCACCACGTCCTCGAGG
TTCGAGGGCTTCGTTCTTTTCCCCAGGCAAGAGATTGATCCACCATCATC
AGTAGCGGCAGCTACACCAACTGCAACGACAACCATCCAACCAGGCAGCG
TTTGGGCTACGTATCAACTTCCTCACAGGAAAAAGGCAAGAGATTGATCC
ACCATCATCAGTAGCGGCAGCTACACCAACTGCAACGACAACCATCCAAC
CAGGCAGCGTTTGGGCTACGTATCAACTTCCTCACAGGAAAAAGGTCACT
ACGAGGGAAGCTTCGTCAAAGAGAAGGGCGGGCGTGGGTGGGGTAGCCAT
CACGCTGGATCAGCTGTTCGCGCACCGCGTGCACGGCGTCGACAACACGG
GCAACGTAAGAGTATGGCCGGCGGAGCACGTTCTTCTCCACGTCTTGCTC
ACCAGGTCACTACGAGGGAAGCTTCGTCAAAGAGAAGGGCGGGCGTGGGT
GGGGTAGCCATCACGCTGGATCAGCTGTTCGCGCACCGCGTGCACGGCGT
CGACAACACGGGCAACGTAAGAGTATGGCCGGCGGAGCACGTTCTTCTCC
ACGTCTTGCTCACCAGCCCGCTGGCCTCCTCTCTGGGCGGGATGCGGGTG
CTGGAGCTCGGGGCGGGCATGTCCGGGTTGGCCGGCCTGGGGGTGGCTGC
TTGCTCGGACGCAGCGGAGGTGGTGATCACGGACGGCAACCCGGACGCGC
TTAGAAATGTCGAGGTACAGTTACGTACGCACCGTGGCATTTTTCCCGCT
GGCCTCCTCTCTGGGCGGGATGCGGGTGCTGGAGCTCGGGGCGGGCATGT
CCGGGTTGGCCGGCCTGGGGGTGGCTGCTTGCTCGGACGCAGCGGAGGTG
GTGATCACGGACGGCAACCCGGACGCGCTTAGAAATGTCGAGGTACAGTT
ACGTACGCACCGTGGCATTTTT
back to top