mRNA_E-fasciculatus_F_contig1025.229.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1025.229.1
Unique NamemRNA_E-fasciculatus_F_contig1025.229.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1025.229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1025contigE-fasciculatus_F_contig1025:11005..14052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_002080.1
Exons3
Model size1204
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1025.229.1prot_E-fasciculatus_F_contig1025.229.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1025 11005..13178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.0133562-CDS-E-fasciculatus_F_contig1025:11004..111411622927527.0133562-CDS-E-fasciculatus_F_contig1025:11004..11141Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 11005..11141 +
1695995579.0134828-CDS-E-fasciculatus_F_contig1025:11004..111411695995579.0134828-CDS-E-fasciculatus_F_contig1025:11004..11141Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 11005..11141 +
1622927527.025061-CDS-E-fasciculatus_F_contig1025:12387..124861622927527.025061-CDS-E-fasciculatus_F_contig1025:12387..12486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 12388..12486 +
1695995579.036983-CDS-E-fasciculatus_F_contig1025:12387..124861695995579.036983-CDS-E-fasciculatus_F_contig1025:12387..12486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 12388..12486 +
1622927527.0378542-CDS-E-fasciculatus_F_contig1025:13084..131781622927527.0378542-CDS-E-fasciculatus_F_contig1025:13084..13178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 13085..13178 +
1695995579.0531583-CDS-E-fasciculatus_F_contig1025:13084..131781695995579.0531583-CDS-E-fasciculatus_F_contig1025:13084..13178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 13085..13178 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.047419-UTR-E-fasciculatus_F_contig1025:13178..140521622927527.047419-UTR-E-fasciculatus_F_contig1025:13178..14052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1025 13179..14052 +
1695995579.0637534-UTR-E-fasciculatus_F_contig1025:13178..140521695995579.0637534-UTR-E-fasciculatus_F_contig1025:13178..14052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1025 13179..14052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1025.229.1

>prot_E-fasciculatus_F_contig1025.229.1 ID=prot_E-fasciculatus_F_contig1025.229.1|Name=mRNA_E-fasciculatus_F_contig1025.229.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=110bp
MSLNGAMVRVGAGAAAVARSALGKPSYGGAALAVTGRRSMTTFKEKERGE
ETVFMRKEDQRLLQNLLKKERNHHEAAKDVAKDELMAILGSNKLPSDVVE
KLVAWKSSH*
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mRNA from alignment at E-fasciculatus_F_contig1025:11005..14052+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1025.229.1 ID=mRNA_E-fasciculatus_F_contig1025.229.1|Name=mRNA_E-fasciculatus_F_contig1025.229.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3048bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1025:11005..14052+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCCTGAACGGCGCGATGGTACGGGTTGGTGCGGGAGCGGCGGCGGT
TGCCCGTAGCGCGCTTGGGAAGCCCAGCTACGGCGGTGCGGCTCTTGCCG
TCACGGGACGCAGGAGCATGACCACCTTCAAGGAGAAGTATGCATAACTC
AACTCATGTGTGGTGACCTGTTGGTGTTTGGCTTTGTCCTGAACATCGCT
CCGATTTGGATCACACATACGGATTGCACACTCCGACCCCCCCCCAGCCT
TGAGTGTGGGGCTTGCGCTCGAATTTCTCCTCCTGCAGTCACCAACGAAC
GAAGTGAAATGAAGCAGGCCGAAGCAAGCCGAAGCCGAAAAAACACCAGC
GCGATGGGCTGCACTGACAGAAATGAGTGTATTTCGGAGATGATACAGCA
GTACTAATTTCACCGGGGACGAAAAGCGTGTGTTTCCGGGATGATATAAT
AGTGCTGTCTTGAGGGCTACTTTTTCGGCAGGCATAGCACTTGCGCTGAA
ATGTGCTCTTCATGATTGGGTTTTAGCGATTTCATGCATTTCCTCGAGGG
TACACATGCCGGAGAATCGCGAGGAGGAGGGCGTTCGCACCGTCATTCAC
CGTCACTACACTACAGCAGTAGTACGTGGGCTCACCCAACCAGCGATTCG
GGATCAGCTTCCCCGGTGAAATAAATAGTGCCATGGCCAAGCAACGGATG
AGTTTGGGAAGTTGCCCCAAAAGGGCGCCCTTAGCGGCTGCCGCCTGCCG
GTGGATTAGGTTTGTGCTCCCACGGCGGGGAGTTCGGCGCCTGTTGCTGA
TTTTTTATTTTTATTTCGAGCCCTTCAACAGTGACACCGTCAGCATCGTA
CACAACACTGACATCTAGCTTCGTGTCTGATATTTCTTAGGCAATGGTGT
CGGAAGCACGATGTCCGAGACTTGGCCACCAGCCACCTCGGCTTTTCTCC
TCCTGCTCGCGTGGGTGCAGCTTGAAATAACATCTACAACGCGTGCGTGC
AGCAGAAACAAAGTCGATCGCACACGAGGTTGTCAAAGAATAAGCACACG
ACTACATACAACGGTGCCAAACGCCGCTTTTCGAAAGCAAGCACCTGCCC
TTGACGATAAGCACGGTGGTCTTTAGGCACATCTGTTTTTTTCAGAGTAG
TATCCCGCGATCCTAACTTTCCCAGGATGGGGATGCCTGTTTGAGAGGCC
TCTCTCTTCCTCTGCCGTACACATAATTGACAAGCGGCGCGGGGACCAAA
CCTTCACATGGCGTTCCATCTCTCCGGAGAAAATACAGACTACCGGGACG
ATACTTGTGTCTGCGTGTGTACCCCAAACTCCCTTACCCTTGCTACCCCC
TCCCCCCGTTTTCTCCCCCGTCCCACTCTTCAGGGAGCGTGGGGAAGAAA
CAGTGTTCATGCGCAAGGAGGACCAAAGGTTGCTCCAGAACTTGCTGAAG
AAGGAAAGGAATCATCACGAGGCTGCCAAGGAGTAAGTGGACTTTGGCTT
GTTTTATTGCCGTAACATGCCCCGTGGCACTGGCTTTTTTCGCACCCAGT
CGCAACTGCAGTTTGATATTCGTGTTTTCCCTCCCGACCGAGGTCTAGTC
TGGAGTAGGCGCACTTCCCCGTCTTGAACACAGTACGGCACTCCGTCACC
TCAACACGAAAGAAATGCTTCACCTAGCATATCCTCAGGGATTCGAGGAG
GCTTGACCAGTCGGCCAGTCTTGATGACTTTCGGTTGCACGGCTCGGCGA
CCTCGCACTTGTTGCACTTTTGGTGCTCGTGCGTTTTGGTACGTTGCCTG
GGCCGGTGCAGACGAAGCTTTCCTATCTACTACCGCGTGTTGTCCGCTTT
CCACTCTTCCACCTTTGTCCCCGTCGTTTTCGCAATAGTTCTGCTTCAAG
TCTTTTCGTTGTGTTGTGTATGTGCCTGCTTATCTTAGTCTTCTAGTGTA
GGCCTCGTGGTTGTCTTCTGGCCAACTGTCTACAACTGCCGTTTCTGATT
GCTGCCGTTGCACACTACCCCTGCTGCCGTCGCCGCCGCCGCCGCCGCCG
CCGCTGCTGCAATTTTTCGACGTGCCACAGCGTCGCGAAAGATGAATTGA
TGGCTATCCTCGGTAGCAACAAGCTTCCCAGCGACGTGGTTGAGAAGCTT
GTCGCCTGGAAGTCATCGCACTAACCTGACCAGTGTCATCCCGGTTTGTG
TGCTCGGTGTGCGCAGCACCTTGAAAAGGAAATGTAATGTTTAGCGTATG
GAAACGCGCAAAAAAGCAGCGCTGCGACCACAGGGCACCGCGTTTTGCTG
CAGGGAGGCCTCTGCGCTTGTGTTGATGCGGAGGCATTTTGCTGCGAATG
ATGAGATTTGGGGGGGCTGGGGATTGGCGGAGAGAGTCCGGCGAGTATCC
TTGAACGAGTGTCCGTGGGCTTGAGAGACGTGTTTATCTGAGCTAACGTG
TGGGTCTGAGCTAGGGGAGGCAGGCGAGGGGGTAGAGGTTGAGAGACGTC
GGCGGAATTATGGTACAGAGCATGTTTTGCGTGTGCTCCCGTTGCCGCTG
GTGCGCTGGTGGGGCGTTGCGGATCCGACCCAACACCGTAAACATAAGAG
CATCATCTGGGGTCGGTTGTATTTGTTTGGCTCAAAGATGTTGAGGCCGG
CATGGCCTCAACTGTAGGGCGCCCCTGCCACCTCGCCCCCCTCCCAGGCC
GGTGTGAAGAAGAATCTCGTTCCGTTTTCGAATCGTGCTTCGTCGCCAGT
AGCTGGCTGCCTGATGCACGTCTTTCTGTCAAGCGAGTGGAAGGAGCGTT
CCTTTTCCGCTCTGTTTTTCTCTTCCTATTTGGTTTCGCCGGCCTGTGCC
GGGAAGAAACGCGCTGGAGTTACAGTGGTGCTGTCATGGCTCGCCATCGC
CCTACATGAGTCACGCGACTTTGTCTGCTGATATGGAACCGTTCGGGGTG
CGTTCGGACCCATTCGGAGTGCAAGCTTCCTTGCTTTTCTCAGCGTCGTG
TGCAGACGAATCAATTTCATGCTTAAGCGTGCGACCAAAACTTCCACC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1025:11005..14052+

>mRNA_E-fasciculatus_F_contig1025.229.1 ID=mRNA_E-fasciculatus_F_contig1025.229.1|Name=mRNA_E-fasciculatus_F_contig1025.229.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1025:11005..14052+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCCTGAACGGCGCGATGGTACGGGTTGGTGCGGGAGCGGCGGCGGT
TGCCCGTAGCGCGCTTGGGAAGCCCAGCTACGGCGGTGCGGCTCTTGCCG
TCACGGGACGCAGGAGCATGACCACCTTCAAGGAGAAATGTCCCTGAACG
GCGCGATGGTACGGGTTGGTGCGGGAGCGGCGGCGGTTGCCCGTAGCGCG
CTTGGGAAGCCCAGCTACGGCGGTGCGGCTCTTGCCGTCACGGGACGCAG
GAGCATGACCACCTTCAAGGAGAAGGAGCGTGGGGAAGAAACAGTGTTCA
TGCGCAAGGAGGACCAAAGGTTGCTCCAGAACTTGCTGAAGAAGGAAAGG
AATCATCACGAGGCTGCCAAGGAGGAGCGTGGGGAAGAAACAGTGTTCAT
GCGCAAGGAGGACCAAAGGTTGCTCCAGAACTTGCTGAAGAAGGAAAGGA
ATCATCACGAGGCTGCCAAGGACGTCGCGAAAGATGAATTGATGGCTATC
CTCGGTAGCAACAAGCTTCCCAGCGACGTGGTTGAGAAGCTTGTCGCCTG
GAAGTCATCGCACTAACGTCGCGAAAGATGAATTGATGGCTATCCTCGGT
AGCAACAAGCTTCCCAGCGACGTGGTTGAGAAGCTTGTCGCCTGGAAGTC
ATCGCACTAA
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