mRNA_E-fasciculatus_F_contig13004.2283.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13004.2283.1
Unique NamemRNA_E-fasciculatus_F_contig13004.2283.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13004.2283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13004contigE-fasciculatus_F_contig13004:3302..3754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size455
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927806.4364474-UTR-E-fasciculatus_F_contig13004:3301..34331622927806.4364474-UTR-E-fasciculatus_F_contig13004:3301..3433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13004 3302..3433 +
1695995702.832475-UTR-E-fasciculatus_F_contig13004:3301..34331695995702.832475-UTR-E-fasciculatus_F_contig13004:3301..3433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13004 3302..3433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927806.4536684-CDS-E-fasciculatus_F_contig13004:3433..37541622927806.4536684-CDS-E-fasciculatus_F_contig13004:3433..3754Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13004 3434..3754 +
1695995702.84262-CDS-E-fasciculatus_F_contig13004:3433..37541695995702.84262-CDS-E-fasciculatus_F_contig13004:3433..3754Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13004 3434..3754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13004.2283.1prot_E-fasciculatus_F_contig13004.2283.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13004 3434..3754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13004.2283.1

>prot_E-fasciculatus_F_contig13004.2283.1 ID=prot_E-fasciculatus_F_contig13004.2283.1|Name=mRNA_E-fasciculatus_F_contig13004.2283.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp
MLYCAFMSSQGRHLLTDRYRGEMSQLVAVLVLLCCWQLTHTRQNYKQQTR
ASPLPHIRVPLPPPLSKPAVLIPHLEYASWNIIQDTISDPCVPSGQRSWR
LLEGISH
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mRNA from alignment at E-fasciculatus_F_contig13004:3302..3754+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13004.2283.1 ID=mRNA_E-fasciculatus_F_contig13004.2283.1|Name=mRNA_E-fasciculatus_F_contig13004.2283.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=453bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13004:3302..3754+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCAAATGGGGAGCGCTCCGACGCTTCATACATTTGTACAGCCAACAGCT
ACATACACCGGTTTGTGAGTGGGGTTCACATAGGTCGGTATCTGCCTGCG
AGTGAGACCAGGCACCAAGTCAACCAGGCAGGATGCTTTATTGCGCTTTC
ATGTCAAGCCAAGGACGACATCTTCTTACAGACAGGTACCGTGGCGAAAT
GAGCCAGCTTGTCGCAGTTTTGGTGCTGCTGTGTTGTTGGCAGCTCACAC
ACACACGCCAGAATTACAAGCAGCAGACACGTGCCTCCCCCTTGCCCCAT
ATTCGGGTCCCCCTGCCTCCGCCGCTCTCAAAACCCGCGGTGCTAATTCC
CCACCTGGAATATGCGTCATGGAATATTATACAGGATACAATATCCGACC
CCTGTGTGCCTTCTGGACAAAGAAGTTGGAGACTTCTCGAGGGTATATCT
CAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13004:3302..3754+

>mRNA_E-fasciculatus_F_contig13004.2283.1 ID=mRNA_E-fasciculatus_F_contig13004.2283.1|Name=mRNA_E-fasciculatus_F_contig13004.2283.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13004:3302..3754+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTTTATTGCGCTTTCATGTCAAGCCAAGGACGACATCTTCTTACAGA
CAGGTACCGTGGCGAAATGAGCCAGCTTGTCGCAGTTTTGGTGCTGCTGT
GTTGTTGGCAGCTCACACACACACGCCAGAATTACAAGCAGCAGACACGT
GCCTCCCCCTTGCCCCATATTCGGGTCCCCCTGCCTCCGCCGCTCTCAAA
ACCCGCGGTGCTAATTCCCCACCTGGAATATGCGTCATGGAATATTATAC
AGGATACAATATCCGACCCCTGTGTGCCTTCTGGACAAAGAAGTTGGAGA
CTTCTCGAGGGTATATCTCATATGCTTTATTGCGCTTTCATGTCAAGCCA
AGGACGACATCTTCTTACAGACAGGTACCGTGGCGAAATGAGCCAGCTTG
TCGCAGTTTTGGTGCTGCTGTGTTGTTGGCAGCTCACACACACACGCCAG
AATTACAAGCAGCAGACACGTGCCTCCCCCTTGCCCCATATTCGGGTCCC
CCTGCCTCCGCCGCTCTCAAAACCCGCGGTGCTAATTCCCCACCTGGAAT
ATGCGTCATGGAATATTATACAGGATACAATATCCGACCCCTGTGTGCCT
TCTGGACAAAGAAGTTGGAGACTTCTCGAGGGTATATCTCAT
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