mRNA_E-fasciculatus_F_contig12987.2262.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12987.2262.1
Unique NamemRNA_E-fasciculatus_F_contig12987.2262.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12987.2262.1 vs. uniprot
Match: A0A6H5JK59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK59_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 5.030e-63
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 1 
Query:   70 GGTGGSNSWVYMSKAWALKWATSAYPGPVSNHHVVCRHGRVKPNVGVKRATKEMVAVPRGVHRSLVNRYGPRTPAVVAGKPSPLDATTGGVKVAVAPGESADRISVGR 393
            GGTGGSNSWVYMSKAWALKWATSAYPGPVSNHHVVCRHGRVKPNVGVKRA KEMVAVPRGVHRSLVNRYGPRTPAVVAGKPSPLDATTGGVKVAVAPGESADRISVGR
Sbjct:  856 GGTGGSNSWVYMSKAWALKWATSAYPGPVSNHHVVCRHGRVKPNVGVKRAAKEMVAVPRGVHRSLVNRYGPRTPAVVAGKPSPLDATTGGVKVAVAPGESADRISVGR 963
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BLAST of mRNA_E-fasciculatus_F_contig12987.2262.1 vs. uniprot
Match: D8LS72_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS72_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 4.870e-27
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:  205 GVKRATKEMVAVPRGVHRSLVNRYGPRTPAVVAGKPSPLDATTGGVKVAVAPGESADRISVGR 393
            G   ATKEMVAVPRGVHRSLVNRYGPRTPAVVAGKPSPLDATTGGVKVAVAPGESADRISVGR
Sbjct:  863 GSNSATKEMVAVPRGVHRSLVNRYGPRTPAVVAGKPSPLDATTGGVKVAVAPGESADRISVGR 925
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12987.2262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK59_9PHAE5.030e-6399.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS72_ECTSI4.870e-2795.24Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12987contigE-fasciculatus_F_contig12987:9..752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue1.4e-23
Seed eggNOG ortholog2880.D8LS72
KEGG koko:K11848,ko:K11851,ko:K11857,ko:K11873
KEGG Pathwayko04137,map04137
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016569,GO:0016570,GO:0016578,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0036211,GO:0036459,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0099114,GO:0101005,GO:0140096,GO:1901564,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsCOG5077@1,COG5560@1,KOG1870@2759,KOG4598@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size395
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927802.5969794-CDS-E-fasciculatus_F_contig12987:8..2231622927802.5969794-CDS-E-fasciculatus_F_contig12987:8..223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12987 9..223 +
1695995701.187018-CDS-E-fasciculatus_F_contig12987:8..2231695995701.187018-CDS-E-fasciculatus_F_contig12987:8..223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12987 9..223 +
1622927802.616842-CDS-E-fasciculatus_F_contig12987:572..7501622927802.616842-CDS-E-fasciculatus_F_contig12987:572..750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12987 573..750 +
1695995701.207333-CDS-E-fasciculatus_F_contig12987:572..7501695995701.207333-CDS-E-fasciculatus_F_contig12987:572..750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12987 573..750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12987.2262.1prot_E-fasciculatus_F_contig12987.2262.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12987 9..750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12987.2262.1

>prot_E-fasciculatus_F_contig12987.2262.1 ID=prot_E-fasciculatus_F_contig12987.2262.1|Name=mRNA_E-fasciculatus_F_contig12987.2262.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=131bp
RRASVTRRRKGRGRRPGSESESEGGTGGSNSWVYMSKAWALKWATSAYPG
PVSNHHVVCRHGRVKPNVGVKRATKEMVAVPRGVHRSLVNRYGPRTPAVV
AGKPSPLDATTGGVKVAVAPGESADRISVGR
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mRNA from alignment at E-fasciculatus_F_contig12987:9..752+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12987.2262.1 ID=mRNA_E-fasciculatus_F_contig12987.2262.1|Name=mRNA_E-fasciculatus_F_contig12987.2262.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=744bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12987:9..752+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGAAGGGCTAGCGTTACTCGACGGCGAAAGGGCCGAGGGCGGCGGCCGGG
GTCCGAGTCGGAGAGCGAGGGGGGCACGGGGGGTTCCAACTCGTGGGTTT
ACATGTCGAAGGCGTGGGCGCTCAAGTGGGCTACGAGCGCGTACCCCGGC
CCGGTGTCGAATCACCACGTGGTGTGCCGCCACGGCAGGGTCAAGCCAAA
TGTCGGGGTCAAGAGGTGAGGGGGCTGGGGACTGGAGGGAGGGAGAGAGA
GGGGCGTTGAGACACTCTATGGAGGACCAAGACCGTGATGAGGATTGAGG
AGGATGATGAGCTCCGTTAGCTGCTACGAGTACCACCCTATTATCTGCAG
CAGTAGAACTTGATGTAGTCGCGGTGGTAGCAGGTCCAGACAACACCCCG
AAGCCGACGTAAACTCAACACGCGGAACCTACGTATACCACCCCCTACCC
GTGCGCACACGCGCTCGCCCCAACCCCTTGCCCTCTCTCTCTCTCTCAAC
GCACCCGCCCTTCTTTTTGTGTCGCTGCTGATGACGACCACCCTACTGCT
CTGCACCGTCTCAGGGCTACGAAGGAGATGGTTGCCGTCCCGCGCGGGGT
CCACAGGTCCCTGGTGAACCGGTACGGTCCGCGTACCCCGGCGGTGGTGG
CGGGAAAGCCCTCGCCGCTGGACGCTACGACGGGCGGCGTGAAGGTGGCG
GTGGCGCCGGGGGAGTCGGCGGACAGGATCAGCGTCGGGCGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12987:9..752+

>mRNA_E-fasciculatus_F_contig12987.2262.1 ID=mRNA_E-fasciculatus_F_contig12987.2262.1|Name=mRNA_E-fasciculatus_F_contig12987.2262.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=786bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12987:9..752+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGAAGGGCTAGCGTTACTCGACGGCGAAAGGGCCGAGGGCGGCGGCCGGG
GTCCGAGTCGGAGAGCGAGGGGGGCACGGGGGGTTCCAACTCGTGGGTTT
ACATGTCGAAGGCGTGGGCGCTCAAGTGGGCTACGAGCGCGTACCCCGGC
CCGGTGTCGAATCACCACGTGGTGTGCCGCCACGGCAGGGTCAAGCCAAA
TGTCGGGGTCAAGAGCGAAGGGCTAGCGTTACTCGACGGCGAAAGGGCCG
AGGGCGGCGGCCGGGGTCCGAGTCGGAGAGCGAGGGGGGCACGGGGGGTT
CCAACTCGTGGGTTTACATGTCGAAGGCGTGGGCGCTCAAGTGGGCTACG
AGCGCGTACCCCGGCCCGGTGTCGAATCACCACGTGGTGTGCCGCCACGG
CAGGGTCAAGCCAAATGTCGGGGTCAAGAGGGCTACGAAGGAGATGGTTG
CCGTCCCGCGCGGGGTCCACAGGTCCCTGGTGAACCGGTACGGTCCGCGT
ACCCCGGCGGTGGTGGCGGGAAAGCCCTCGCCGCTGGACGCTACGACGGG
CGGCGTGAAGGTGGCGGTGGCGCCGGGGGAGTCGGCGGACAGGATCAGCG
TCGGGCGGGGCTACGAAGGAGATGGTTGCCGTCCCGCGCGGGGTCCACAG
GTCCCTGGTGAACCGGTACGGTCCGCGTACCCCGGCGGTGGTGGCGGGAA
AGCCCTCGCCGCTGGACGCTACGACGGGCGGCGTGAAGGTGGCGGTGGCG
CCGGGGGAGTCGGCGGACAGGATCAGCGTCGGGCGG
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