mRNA_E-fasciculatus_F_contig12929.2219.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12929.2219.1
Unique NamemRNA_E-fasciculatus_F_contig12929.2219.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12929.2219.1 vs. uniprot
Match: D7FH14_ECTSI (Hypothetical F-box and leucine rich repeat containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH14_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 1.100e-93
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 
Query:    1 MLNTATMKMPEDQFLNVLSYLVVDSVFAMSSTCRQLHEWCSLFKAVDAGEEELRNADLALLVRRFPAVNDLTIRSASRLTTAYEVLAEIGPQLVSLKLTGARIIRDDTFRDMVRTFESMRYLSLDGTFYVKSQAINALAKAGQQLQEV 444
            MLNTATMKMPEDQFLNVLSYLVVDSVFAMSSTCRQLHEWCSLFKAVDAGEEELRNADLALLVRRFPAVNDLTIRSASRLTTAYEVLAEIGPQLVSLKLTGARIIRDDTFRDMVRTFESMRYLSLDGTFYVKSQAINALAKAGQQLQEV
Sbjct:    1 MLNTATMKMPEDQFLNVLSYLVVDSVFAMSSTCRQLHEWCSLFKAVDAGEEELRNADLALLVRRFPAVNDLTIRSASRLTTAYEVLAEIGPQLVSLKLTGARIIRDDTFRDMVRTFESMRYLSLDGTFYVKSQAINALAKAGQQLQEV 148
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12929.2219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH14_ECTSI1.100e-93100.00Hypothetical F-box and leucine rich repeat contain... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12929contigE-fasciculatus_F_contig12929:281..3475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.4
Seed ortholog evalue1.5e-74
Seed eggNOG ortholog2880.D7FH14
KEGG koko:K10268
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG4341@1,KOG4341@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical F-box and leucine rich repeat containing protein
Ec32 orthologEc-26_003110.1
Exons3
Model size444
Cds size444
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12929.2219.1prot_E-fasciculatus_F_contig12929.2219.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12929 281..3475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927796.9099295-CDS-E-fasciculatus_F_contig12929:280..4601622927796.9099295-CDS-E-fasciculatus_F_contig12929:280..460Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12929 281..460 -
1695995698.9217806-CDS-E-fasciculatus_F_contig12929:280..4601695995698.9217806-CDS-E-fasciculatus_F_contig12929:280..460Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12929 281..460 -
1622927796.9251666-CDS-E-fasciculatus_F_contig12929:1477..16191622927796.9251666-CDS-E-fasciculatus_F_contig12929:1477..1619Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12929 1478..1619 -
1695995698.9318125-CDS-E-fasciculatus_F_contig12929:1477..16191695995698.9318125-CDS-E-fasciculatus_F_contig12929:1477..1619Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12929 1478..1619 -
1622927796.9421144-CDS-E-fasciculatus_F_contig12929:3353..34751622927796.9421144-CDS-E-fasciculatus_F_contig12929:3353..3475Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12929 3354..3475 -
1695995698.940149-CDS-E-fasciculatus_F_contig12929:3353..34751695995698.940149-CDS-E-fasciculatus_F_contig12929:3353..3475Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12929 3354..3475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12929.2219.1

>prot_E-fasciculatus_F_contig12929.2219.1 ID=prot_E-fasciculatus_F_contig12929.2219.1|Name=mRNA_E-fasciculatus_F_contig12929.2219.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=148bp
MLNTATMKMPEDQFLNVLSYLVVDSVFAMSSTCRQLHEWCSLFKAVDAGE
EELRNADLALLVRRFPAVNDLTIRSASRLTTAYEVLAEIGPQLVSLKLTG
ARIIRDDTFRDMVRTFESMRYLSLDGTFYVKSQAINALAKAGQQLQEV
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mRNA from alignment at E-fasciculatus_F_contig12929:281..3475-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12929.2219.1 ID=mRNA_E-fasciculatus_F_contig12929.2219.1|Name=mRNA_E-fasciculatus_F_contig12929.2219.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3195bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12929:281..3475- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCAACACGGCGACCATGAAGATGCCCGAGGACCAGTTCCTGAACGT
CCTGTCCTACCTGGTCGTGGATTCGGTGTTCGCGATGTCGTCCACGTGCC
GCCAGCTTCACGAGTGGTGCAGGTGACTTGATTGCTTGATACTGCTGTTG
GACGTATTCTACACTCTACACACTCGTCGAATCTCCGAACTCCGAACTGT
ACACTCGACTACATTACCCGAAAATCGTTCGTCTTTTTCCTGCTGTGTGC
TGTGTGTCGGGAGGGAGCAGTAGGGGTGTGGGCTTTTGGCGTGACCCTAG
TGGTGCCTAAAAACAGTAACATTATCCGACGAAGCTGGTTTCCTTCTTCC
CCGCGCTTCGGAAGAGGGCGTAGTGAGCGTGTCTCCATACGCGGTAGGCT
CTGTGTGGCGGCTTCGTACTCTTTGGCTATGTACGTCACGCGATCTGCAA
AATTCCGTCGCTTTATTGTTTTGTATTGTACGTATGATAGACTTCAGAGA
GGGGTCTAAGGCAGAGGTCATGTTGTCATGTGGCCCCCCGTCATCGTGTG
CTGAGTACTTGTTGCTTGGCTTAAATCTTTTAAAGGTGTTTTCGAAACCA
GTTTTATCATGTTCCAAGTTTTGAAGAGTGACGGACGGACACATGGACGA
TCTGGCGCAACGGCCATAGCGCTGAAGGCAGCGGTTGCCGCCGTTCAGTG
TGCAGGGCAGCTTGCCGCGGGTTTATCGAGATGGCAGATTTCTATGATAG
CATGCATAGAGTAGCGGGCCGGTGAAGCAGCAGTAACGACGCCGTTGACA
GCAGTCACGTCTACAAGTACACTAGAGGCAACTGGAACCTGCCCAAAAAG
GCCGCGTGTACACCAGTCTCGGTTTGATCGCCCGATATTATCATTGACAG
CATATGCATATGTGCGAAGACGTGATCGTCCTCGACAGACCGTTGCGTAG
CATTTGTACCGCGTGTACACGATCCGTCTTACAGCTTGTATCTTGTATCG
CTCTCGCCGCTGCCTGCTTGGCAGACCAGAGCCAGACAAAAGACAAAACC
ACCCTTTGCCCGCTGGCTGTGGCCGATGCGGGCAGACTCACGCCTTTCAG
CCGCAGAAAAAGTGTTTTGCAGTTCCAAATCAGGACGACTCCAAACACCT
TGTCCTCACGAAGACACGAGTAAATACTACTCTTTCCCAGAGGCAGAGGG
AGCGAAGGGGGAAGAGTACGTGCAGACAGCGGTATTCGAGCTGTAGACTA
GTGTTTGGCGTTGTGTAGACGCTTTTTGCTGTTCCTGTTCCGGAGGCGTC
ATTCCAACTACTGCTGTTCCGCTTGCTACAAAACTATGTAGTTGTACTTT
TCTTTAAAAGTATAATGATCCCTCAGCAGGGCCGGTATGTTCCCGCTGAC
AGCTGACAACACCAGCGCTCTATTGTATTGTACGGGGTGGCCGGCACTAT
TAAACTATTCAACCGGGAATACTGCTGAGGGGCCATTCCTGTGTGCACCA
CATGTACCTAAACCAACCCCGTGATCAGCATTCGTCCATCATCGTGAACA
TCGTTCATTTTTTGTCAACGTTCGCTGTGGTACACACATCGCCTGCTGTC
GTTCTCCCAACGTGGCTGCAATATGTCCGTTTTGAGACCGTGGCCGCGGC
GAAACAGCAGCAGCAGCAGCAGCAGCAGCAGCGCACAGCAGTATCGTGCG
GTATAAAGTGTGCCCCCTCAATTAGAAAAGACAAACACGACAATGACTGT
GGATGAACCGTTCTCGCGCAGCACTGGTATCTATACCCCGGTGCTCATGT
TTCCAACGTGCTGCCGCACTCCTCATGCCCCCTCCTTTGGCGCACGTTTT
TTGCAGCCTGTTCAAGGCTGTCGATGCCGGCGAGGAGGAGCTACGAAACG
CGGACCTGGCGCTGCTAGTCAGGCGCTTCCCGGCCGTGAACGATCTCACC
ATCCGCTCCGCCTCCCGGCTCACGACAGCGTACGAGGTCCTTGCTGAGGT
ACGTGAATGTCGGAGATAAAACGCTGAATAGCTTTCCGCAGATACGTTAA
CTGAGCGTAGAGCTCCAAAAGGTTTGTGTGTGTTGTGGAGTACGTGGCGT
GTCTTTTGAAACGGGTCCCTTTTTTCCCGCATCTCGTCTCCACCGTGAGC
GAGTGAACCGGTCGATCTCTCGCCGGTATCCGGCGTGTCGCCCTCTCGCG
AGCGTGCACAACACCCCGTGCGGACTTGTGTTCCACGCTGCCGCTATTGT
ACGTGTCCGCCGGTCTGCTTCTCTTATCGCTTGCGGCGCCCCAACCTTTC
ATTCTTCATTCGGGTCGTTGTCGTTGGACCCGTACTACCCGTCTTCCTTC
CGGGCCCGTACTACCCGTCTTCCTTCCTGGCCCGTGCTACCCGTCTTCCT
TCCGGGCCCGTACTACCCGTCTTCCTTCCGGACCCGTACCACCCGTCTTC
GTTCCGGACCCGTACCACCCGTCTTCGTTCCGGACCCGTACCACCCGTCT
TCCTTCCGGACCCGTATGCATACTACCCGTCTTCCTTCTATGATAGCCAT
GTTTCGGCCTTTCAGCCTCCCCTCGTAGTGCCCTCAATCATCGAAATAGA
CACTAGCTGTTGTCTGGTTTTCTAGATACCTTCCGGTCTCCGGCCATTCT
GGTTTGTTGCATTGTTGGTTGGTGCCCGGCATACCAAACAATAGAGAATA
ATTGAGTAAGTAGGTTGGCAAGCCCGCAAGACAACGCTGGTCCCGAACGG
CAATTGGTCAGAAAAAGCCCATGGAACACTGCTGTCTGTCGCGGCAAGGC
CTAGTGGATGCGAAGTCGCCCACCCGCTACGTAGAGAGATGAACGTTAGC
TCCCTTTCTTTTCTGCACGCACGCGTGGCAGCGAGCAGACGGAAGGAGGG
GGTGCTGGTTACACTCGACACGCTGCTGCCATGCGCAAGATCATTAACTC
TTGTATGTGTCCTTTTTTGTTTCATGTATCTTCTCGTCGCGTTGTCTTCG
TGGCCGTGCGTGCAGATCGGGCCGCAGCTGGTGTCTCTCAAGCTGACCGG
GGCGCGCATCATCCGGGACGATACGTTCCGCGACATGGTGCGCACGTTCG
AGAGCATGAGGTACCTCTCGCTGGACGGCACCTTCTACGTGAAGAGCCAG
GCCATCAACGCCCTCGCCAAGGCGGGGCAGCAGCTGCAAGAGGTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12929:281..3475-

>mRNA_E-fasciculatus_F_contig12929.2219.1 ID=mRNA_E-fasciculatus_F_contig12929.2219.1|Name=mRNA_E-fasciculatus_F_contig12929.2219.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=888bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12929:281..3475- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCAACACGGCGACCATGAAGATGCCCGAGGACCAGTTCCTGAACGT
CCTGTCCTACCTGGTCGTGGATTCGGTGTTCGCGATGTCGTCCACGTGCC
GCCAGCTTCACGAGTGGTGCAGATGCTCAACACGGCGACCATGAAGATGC
CCGAGGACCAGTTCCTGAACGTCCTGTCCTACCTGGTCGTGGATTCGGTG
TTCGCGATGTCGTCCACGTGCCGCCAGCTTCACGAGTGGTGCAGCCTGTT
CAAGGCTGTCGATGCCGGCGAGGAGGAGCTACGAAACGCGGACCTGGCGC
TGCTAGTCAGGCGCTTCCCGGCCGTGAACGATCTCACCATCCGCTCCGCC
TCCCGGCTCACGACAGCGTACGAGGTCCTTGCTGAGCCTGTTCAAGGCTG
TCGATGCCGGCGAGGAGGAGCTACGAAACGCGGACCTGGCGCTGCTAGTC
AGGCGCTTCCCGGCCGTGAACGATCTCACCATCCGCTCCGCCTCCCGGCT
CACGACAGCGTACGAGGTCCTTGCTGAGATCGGGCCGCAGCTGGTGTCTC
TCAAGCTGACCGGGGCGCGCATCATCCGGGACGATACGTTCCGCGACATG
GTGCGCACGTTCGAGAGCATGAGGTACCTCTCGCTGGACGGCACCTTCTA
CGTGAAGAGCCAGGCCATCAACGCCCTCGCCAAGGCGGGGCAGCAGCTGC
AAGAGGTAATCGGGCCGCAGCTGGTGTCTCTCAAGCTGACCGGGGCGCGC
ATCATCCGGGACGATACGTTCCGCGACATGGTGCGCACGTTCGAGAGCAT
GAGGTACCTCTCGCTGGACGGCACCTTCTACGTGAAGAGCCAGGCCATCA
ACGCCCTCGCCAAGGCGGGGCAGCAGCTGCAAGAGGTA
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