mRNA_E-fasciculatus_F_contig1289.2180.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1289.2180.1
Unique NamemRNA_E-fasciculatus_F_contig1289.2180.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1289.2180.1 vs. uniprot
Match: D8LTT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT4_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 7.900e-72
Identity = 129/184 (70.11%), Postives = 140/184 (76.09%), Query Frame = 1 
Query:    1 MAAEQAVAAXXXXXXXQQTDDEGDMTRKLMTAELTLADMEACLVEVQGELSSERANNDELKERAEALEEALETCKRGREEAVQQVSEQAALEIAAXXXXXXXXXXXXXXXXXRWSIXVAGLERELEQASCLAEGLEEMLVQEKSTAARKETRLRTLFRRLDFLDSAEQGTVDDDPNSYAYGLPE 552
            MAAEQAVAA       QQ D  G MT KLMTAELTLAD EACLVEVQGEL SER NND LKE+A+ALEEAL+TCK+GREEAVQQVS+Q  ++I A                 RWS  VAGLE E EQASCLAEGLE++LV+EKS A+RKE RLRTLFRRLDFLDSAEQGTVDDDPNSYAY  PE
Sbjct:    1 MAAEQAVAAAARKTPPQQADQPGGMTSKLMTAELTLADTEACLVEVQGELLSERENNDRLKEKAKALEEALKTCKKGREEAVQQVSKQGEVKITALKARLRLAEHARAKDEKRWSSRVAGLESEREQASCLAEGLEKILVKEKSAASRKEARLRTLFRRLDFLDSAEQGTVDDDPNSYAYSPPE 184
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BLAST of mRNA_E-fasciculatus_F_contig1289.2180.1 vs. uniprot
Match: A0A6H5KF01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF01_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 2.280e-69
Identity = 129/184 (70.11%), Postives = 139/184 (75.54%), Query Frame = 1 
Query:    1 MAAEQAVAAXXXXXXXQQTDDEGDMTRKLMTAELTLADMEACLVEVQGELSSERANNDELKERAEALEEALETCKRGREEAVQQVSEQAALEIAAXXXXXXXXXXXXXXXXXRWSIXVAGLERELEQASCLAEGLEEMLVQEKSTAARKETRLRTLFRRLDFLDSAEQGTVDDDPNSYAYGLPE 552
            MAAEQAVAA       QQ  + G M  +LMTAEL L D EACLVEVQGELSSER NND+LKE+A ALEEALETCK+GREEAVQQVS+Q  +EIAA                 RWS  VAGLE E EQASCLAEGLE++LVQEKS A+RKE RLRTLFRRLDFLDSAEQGTVDDDPN YAY LPE
Sbjct:  197 MAAEQAVAATAGKTPQQQPHEAGGMASRLMTAELALLDTEACLVEVQGELSSERENNDKLKEKANALEEALETCKKGREEAVQQVSKQGEVEIAALKARLRQAEHARAKDEKRWSTRVAGLESEREQASCLAEGLEKILVQEKSAASRKEARLRTLFRRLDFLDSAEQGTVDDDPNPYAYSLPE 380
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1289.2180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTT4_ECTSI7.900e-7270.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF01_9PHAE2.280e-6970.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1289contigE-fasciculatus_F_contig1289:15001..15555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002890.1
Exons1
Model size555
Cds size555
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927792.319543-CDS-E-fasciculatus_F_contig1289:15000..155551622927792.319543-CDS-E-fasciculatus_F_contig1289:15000..15555Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1289 15001..15555 -
1695995696.816558-CDS-E-fasciculatus_F_contig1289:15000..155551695995696.816558-CDS-E-fasciculatus_F_contig1289:15000..15555Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1289 15001..15555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1289.2180.1prot_E-fasciculatus_F_contig1289.2180.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1289 15001..15555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1289.2180.1

>prot_E-fasciculatus_F_contig1289.2180.1 ID=prot_E-fasciculatus_F_contig1289.2180.1|Name=mRNA_E-fasciculatus_F_contig1289.2180.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=185bp
MAAEQAVAAAAKKTPPQQTDDEGDMTRKLMTAELTLADMEACLVEVQGEL
SSERANNDELKERAEALEEALETCKRGREEAVQQVSEQAALEIAALKACL
RQAEHARARDEKRWSIRVAGLERELEQASCLAEGLEEMLVQEKSTAARKE
TRLRTLFRRLDFLDSAEQGTVDDDPNSYAYGLPE*
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mRNA from alignment at E-fasciculatus_F_contig1289:15001..15555-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1289.2180.1 ID=mRNA_E-fasciculatus_F_contig1289.2180.1|Name=mRNA_E-fasciculatus_F_contig1289.2180.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=555bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1289:15001..15555- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGCAGAACAGGCCGTAGCAGCGGCTGCGAAAAAGACCCCGCCGCA
GCAGACTGACGACGAAGGGGACATGACGAGAAAATTGATGACAGCAGAGC
TAACCCTGGCTGACATGGAGGCATGCCTGGTCGAGGTCCAGGGAGAGTTG
TCGTCGGAGCGCGCGAACAACGACGAGCTAAAGGAGAGGGCTGAAGCGCT
CGAGGAGGCCTTGGAAACGTGCAAGAGGGGGAGAGAAGAAGCTGTCCAGC
AGGTGTCCGAGCAAGCGGCGCTCGAGATCGCTGCGCTCAAAGCATGCCTG
CGCCAGGCGGAGCACGCCCGAGCAAGGGACGAGAAACGGTGGTCGATCAG
GGTGGCAGGTCTGGAGAGGGAGCTGGAACAAGCCAGCTGTCTTGCCGAGG
GACTCGAAGAGATGTTGGTGCAGGAAAAATCCACCGCGGCTCGAAAAGAG
ACGAGACTTCGGACTTTGTTCCGGAGGCTTGATTTTCTGGATTCGGCGGA
GCAAGGCACAGTTGACGACGACCCCAACTCGTATGCTTACGGTCTCCCAG
AGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1289:15001..15555-

>mRNA_E-fasciculatus_F_contig1289.2180.1 ID=mRNA_E-fasciculatus_F_contig1289.2180.1|Name=mRNA_E-fasciculatus_F_contig1289.2180.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1110bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1289:15001..15555- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGCAGAACAGGCCGTAGCAGCGGCTGCGAAAAAGACCCCGCCGCA
GCAGACTGACGACGAAGGGGACATGACGAGAAAATTGATGACAGCAGAGC
TAACCCTGGCTGACATGGAGGCATGCCTGGTCGAGGTCCAGGGAGAGTTG
TCGTCGGAGCGCGCGAACAACGACGAGCTAAAGGAGAGGGCTGAAGCGCT
CGAGGAGGCCTTGGAAACGTGCAAGAGGGGGAGAGAAGAAGCTGTCCAGC
AGGTGTCCGAGCAAGCGGCGCTCGAGATCGCTGCGCTCAAAGCATGCCTG
CGCCAGGCGGAGCACGCCCGAGCAAGGGACGAGAAACGGTGGTCGATCAG
GGTGGCAGGTCTGGAGAGGGAGCTGGAACAAGCCAGCTGTCTTGCCGAGG
GACTCGAAGAGATGTTGGTGCAGGAAAAATCCACCGCGGCTCGAAAAGAG
ACGAGACTTCGGACTTTGTTCCGGAGGCTTGATTTTCTGGATTCGGCGGA
GCAAGGCACAGTTGACGACGACCCCAACTCGTATGCTTACGGTCTCCCAG
AGTAGATGGCGGCAGAACAGGCCGTAGCAGCGGCTGCGAAAAAGACCCCG
CCGCAGCAGACTGACGACGAAGGGGACATGACGAGAAAATTGATGACAGC
AGAGCTAACCCTGGCTGACATGGAGGCATGCCTGGTCGAGGTCCAGGGAG
AGTTGTCGTCGGAGCGCGCGAACAACGACGAGCTAAAGGAGAGGGCTGAA
GCGCTCGAGGAGGCCTTGGAAACGTGCAAGAGGGGGAGAGAAGAAGCTGT
CCAGCAGGTGTCCGAGCAAGCGGCGCTCGAGATCGCTGCGCTCAAAGCAT
GCCTGCGCCAGGCGGAGCACGCCCGAGCAAGGGACGAGAAACGGTGGTCG
ATCAGGGTGGCAGGTCTGGAGAGGGAGCTGGAACAAGCCAGCTGTCTTGC
CGAGGGACTCGAAGAGATGTTGGTGCAGGAAAAATCCACCGCGGCTCGAA
AAGAGACGAGACTTCGGACTTTGTTCCGGAGGCTTGATTTTCTGGATTCG
GCGGAGCAAGGCACAGTTGACGACGACCCCAACTCGTATGCTTACGGTCT
CCCAGAGTAG
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