mRNA_E-fasciculatus_F_contig12864.2158.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12864.2158.1
Unique NamemRNA_E-fasciculatus_F_contig12864.2158.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12864.2158.1 vs. uniprot
Match: A0A6H5LEH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEH4_9PHAE)

HSP 1 Score: 355 bits (910), Expect = 1.030e-114
Identity = 168/195 (86.15%), Postives = 176/195 (90.26%), Query Frame = 1 
Query:    1 FATVGCDPRGQLLVWDTRTDGSRPVVRGALGCIRGSKAPYLCVASQPFTPEVFACGASTGEVLVWDVRTGVPLHELEAQDESSAGGGSWGVAFHPRSPRHLFSCSGTGVLTKWYVPPEGQAPRPAAGGGGGREGVVGGGWGDGGWESLRGARHLYELPSRSGMVGVCYDETADTVAAVSKHGHVVVAQGVAGLRL 585
            FATVGC+PRGQLLVWD RTDGSRPVVRGALGCIRGS+APYLCVASQPF PEVFACG STGEV+VWDVRTGVPLHEL+AQDE+SA GGSWGV FHPRSPRHLFSCSGTGVLTKWY+PPEGQA  PAA        V GG WG GGWESLRGARHLYELPSRSG+VGVCYDETADT+AAVSKHGHVVVA GVAGLRL
Sbjct:  269 FATVGCNPRGQLLVWDARTDGSRPVVRGALGCIRGSEAPYLCVASQPFAPEVFACGVSTGEVIVWDVRTGVPLHELQAQDETSAAGGSWGVTFHPRSPRHLFSCSGTGVLTKWYMPPEGQAHEPAA--------VDGGEWGGGGWESLRGARHLYELPSRSGLVGVCYDETADTIAAVSKHGHVVVAHGVAGLRL 455
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12864.2158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LEH4_9PHAE1.030e-11486.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12864contigE-fasciculatus_F_contig12864:48..2861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score76.6
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog8090.ENSORLP00000022055
Preferred nameNUP43
KEGG koko:K14305
KEGG TC1.l.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005694,GO:0005737,GO:0005829,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016032,GO:0031080,GO:0031503,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0098687
EggNOG free text desc.Nucleoporin
EggNOG OGs38BWJ@33154,3BATR@33208,3CY83@33213,48430@7711,495ZD@7742,49WZ3@7898,KOG4714@1,KOG4714@2759
COG Functional cat.Y
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size1481
Cds size588
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12864.2158.1prot_E-fasciculatus_F_contig12864.2158.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12864 48..1922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927789.7483187-CDS-E-fasciculatus_F_contig12864:47..2001622927789.7483187-CDS-E-fasciculatus_F_contig12864:47..200Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12864 48..200 +
1695995695.547915-CDS-E-fasciculatus_F_contig12864:47..2001695995695.547915-CDS-E-fasciculatus_F_contig12864:47..200Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12864 48..200 +
1622927789.765828-CDS-E-fasciculatus_F_contig12864:757..8351622927789.765828-CDS-E-fasciculatus_F_contig12864:757..835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12864 758..835 +
1695995695.558348-CDS-E-fasciculatus_F_contig12864:757..8351695995695.558348-CDS-E-fasciculatus_F_contig12864:757..835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12864 758..835 +
1622927789.778376-CDS-E-fasciculatus_F_contig12864:1565..19221622927789.778376-CDS-E-fasciculatus_F_contig12864:1565..1922Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12864 1566..1922 +
1695995695.5664532-CDS-E-fasciculatus_F_contig12864:1565..19221695995695.5664532-CDS-E-fasciculatus_F_contig12864:1565..1922Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12864 1566..1922 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927789.788795-UTR-E-fasciculatus_F_contig12864:1922..21511622927789.788795-UTR-E-fasciculatus_F_contig12864:1922..2151Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12864 1923..2151 +
1695995695.5746028-UTR-E-fasciculatus_F_contig12864:1922..21511695995695.5746028-UTR-E-fasciculatus_F_contig12864:1922..2151Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12864 1923..2151 +
1622927789.8014667-UTR-E-fasciculatus_F_contig12864:2199..28611622927789.8014667-UTR-E-fasciculatus_F_contig12864:2199..2861Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12864 2200..2861 +
1695995695.5828211-UTR-E-fasciculatus_F_contig12864:2199..28611695995695.5828211-UTR-E-fasciculatus_F_contig12864:2199..2861Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12864 2200..2861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12864.2158.1

>prot_E-fasciculatus_F_contig12864.2158.1 ID=prot_E-fasciculatus_F_contig12864.2158.1|Name=mRNA_E-fasciculatus_F_contig12864.2158.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=196bp
FATVGCDPRGQLLVWDTRTDGSRPVVRGALGCIRGSKAPYLCVASQPFTP
EVFACGASTGEVLVWDVRTGVPLHELEAQDESSAGGGSWGVAFHPRSPRH
LFSCSGTGVLTKWYVPPEGQAPRPAAGGGGGREGVVGGGWGDGGWESLRG
ARHLYELPSRSGMVGVCYDETADTVAAVSKHGHVVVAQGVAGLRL*
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mRNA from alignment at E-fasciculatus_F_contig12864:48..2861+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12864.2158.1 ID=mRNA_E-fasciculatus_F_contig12864.2158.1|Name=mRNA_E-fasciculatus_F_contig12864.2158.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2814bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12864:48..2861+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTGCCACGGTGGGCTGCGATCCCAGGGGACAGCTGCTGGTTTGGGATAC
ACGCACGGACGGCTCCCGGCCGGTGGTTAGAGGCGCTCTCGGCTGCATCC
GCGGCAGCAAAGCCCCCTACCTGTGTGTGGCTAGCCAACCCTTCACACCG
GAGGTATGTACGGGCTATCGGTACTATAATATATATACCAAGTGCTCGCG
CGTGAGAATATTTTTTTGGTACATTTTTGCAAAAACCCGCATGCAGATGG
ATTGTTCCTGAAGCGTTGTATGTGAATGCAAATCGGTACGCTACGCCAAT
GCGGGCCATAGGGGTTGATGCGCGACTGTCTCGTTCGATTGTGGTCAGTC
AGCCCGTGTGAGCTCGCCGTGTTTCCGGCCTACATCTTGGTTCATCCCGG
CTATCGTTTGTGATCGGGTCGCGCGAAAAGTCCACCAGCAATAACGTCGC
GCTCTTCGACAACTGGGCCTCTTGCATGCCATGTTGCGGACAGAACGGGG
ACGCTCCGCTTGCGCTCTGCTTTTCCCGTATAACAACGGCAGCAACAGCG
GAAACTTTCTTTCGCCAGCAGAAGCAACATGACCAAATGCGATGGTCCAC
GACTCGTTTTTTTTTTTACTGCCCTTATTGAACCACGTGTTTGGTGTGTA
ACTGAGCGTCCTTTCAATCACCATCGCGTCCCTATCCCCTGACGAAACGG
GATGGTTTAGGTGTTCGCGTGCGGTGCAAGCACCGGGGAGGTGCTTGTCT
GGGACGTGCGAACGGGGGTCCCGCTGCACGAGCTCGAGGTACGTGTACGT
GGCTGTCGCCACGACAACGCGGCGAAACCGAAAACATGCGCATGTACAGA
CGCGGGGGAGCATAAAGGTCCTTGGAGCCCCGCTTAGTGGCAAATACCGT
AGGTGACGCAAGTTACCACCCCCTCTCGTTGAACGATTTTGAAGTCCACC
TCACCAGGAGAAAGTGGCGGTGCCATCAAATGTATATAGGCGTCAGAACC
GCCTCTATGAGGTATGTATTTCCGAAAAATCGCACCAGTTGAGGTTAGCA
TCATCCCCTTCTTCGTGGAGTGTAGTCGAGCTTTGCAAAAAATCCCTCCA
GGGGGTGTGGTATTCTCGTGTGTCACCGACGGTATTATTGTCGTATTGGT
GTCTCTTGGGTGAGATGAGAGCCATGCGGTGCTAGGGCACGGTTAACGTC
GTCTTGTCCCAATGATACAGGGGTGGCGAATCCCGTTCCGATCATGAGCC
GTTGCCGAATAATAGTCGTCGCTGAGGGTGCTTTCTCACGGCTAGTGCGT
AGGAGACCCGGAAATTTCATGTTTCGACATATGTGTACGTGGTACCCGTT
CCAACGCGAGCGATTTTCGAACTCTGGAATCGATGGCTGCACTAGTCTCA
CGCCCCCTCTGCTGCCGTAATATAGCCCCCAATCGCACTCTTGACGAGTC
TCCGAAGGAACTTTTCTCTCTGAACAACGAAACGTATACGTACCACGTGC
GAATCAACGACCTCGCAGGCGCAAGACGAGAGCAGCGCGGGAGGGGGTTC
CTGGGGCGTGGCATTCCACCCGCGGAGCCCCCGGCACCTGTTTTCGTGCT
CGGGGACCGGGGTGCTGACCAAGTGGTACGTGCCTCCTGAGGGCCAAGCC
CCCCGACCTGCTGCCGGCGGCGGCGGCGGCAGGGAGGGCGTTGTTGGAGG
GGGGTGGGGGGACGGCGGCTGGGAGTCGTTGCGGGGGGCGAGGCACCTGT
ACGAGCTGCCCTCTCGCTCTGGGATGGTGGGGGTCTGCTACGACGAGACG
GCGGACACGGTAGCGGCCGTCAGCAAGCACGGGCACGTGGTGGTCGCTCA
GGGGGTGGCCGGTTTAAGACTGTGATTGTGCCCGTTCGTTGTTGGGTGTA
GTCTGGGTTATTTTATTTTTTCATCTGGCCTGCGTGTGTGCGTTTGTATG
GCTACAGTGTGGTATGATGCATGCTCTGTTGTTGTTGGGTTGGCTGATGA
GTGGCGGCAGTTGACACTTGTCAATATTTTTTCCTTGTTGCTCGTACGGT
GTTATCATAGGTGTGTCGTCGTTTGTTTTACACCCGTCCTTGTCGTGAGG
GTCGGTTGCCTTTTCATGGTCAAGACATGAACTACTCCGGTACACAACTC
TCCGTAATATTGTATTCCTTTTTTTTTTTTTTCATTTGTTGCTCTTCGTG
AACGCGAACGAGTCGCAACGAGAGAGCCATGCGAACTCTGCCGAAACTTT
CGGCGACTCAAAGACGAGTGAGCCTGGAGATCGAAGACGAGTGTGGAGAT
GCCCGACTCCTCGTAGTTCTGCGACGTCTATCGTTGGTGTCGGACGAGGA
CATGAGGACGTGGCAGCAGACGCGAGGCTTGTCGATGCCGGAGAAGAAAG
GGCCGGCATTCAAGAGGAGGGTGCACAGCATGCAATAGCGGTGGCTGACT
CCGTCCTCGAAGGACGGCCCAGCCGCTCCCGTCTTCGTATCGGAGCAAAC
CCTCCCCCCTGCCGAACGAAAATTTAATCGCGTTCTGATTCGCTTCGTGG
TGCAGCTCTTGACTTGGCTTACTGGCGTCGACAGCCATGTGGTTTGCACC
CACCTCCTTTTGTTTCCTCCCTGCCGGGAAAGGTTGGCTCAACTGAAGGG
CCCAGAGGCATGCCCACGCACGCACGCGAGTAGCGTGACTGTTGTTATGT
TGCGCGGATGAATGGATGGGTGTATTGGTGGGGAGAGAGAGTTAACAGAG
TTAGCAGAGCGAAAGGTATTCCACGAAGAGGTGTCGAACTGAGCGCCCCC
TTAATCAATCCGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12864:48..2861+

>mRNA_E-fasciculatus_F_contig12864.2158.1 ID=mRNA_E-fasciculatus_F_contig12864.2158.1|Name=mRNA_E-fasciculatus_F_contig12864.2158.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1176bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12864:48..2861+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTGCCACGGTGGGCTGCGATCCCAGGGGACAGCTGCTGGTTTGGGATAC
ACGCACGGACGGCTCCCGGCCGGTGGTTAGAGGCGCTCTCGGCTGCATCC
GCGGCAGCAAAGCCCCCTACCTGTGTGTGGCTAGCCAACCCTTCACACCG
GAGTTTGCCACGGTGGGCTGCGATCCCAGGGGACAGCTGCTGGTTTGGGA
TACACGCACGGACGGCTCCCGGCCGGTGGTTAGAGGCGCTCTCGGCTGCA
TCCGCGGCAGCAAAGCCCCCTACCTGTGTGTGGCTAGCCAACCCTTCACA
CCGGAGGTGTTCGCGTGCGGTGCAAGCACCGGGGAGGTGCTTGTCTGGGA
CGTGCGAACGGGGGTCCCGCTGCACGAGCTCGAGGTGTTCGCGTGCGGTG
CAAGCACCGGGGAGGTGCTTGTCTGGGACGTGCGAACGGGGGTCCCGCTG
CACGAGCTCGAGGCGCAAGACGAGAGCAGCGCGGGAGGGGGTTCCTGGGG
CGTGGCATTCCACCCGCGGAGCCCCCGGCACCTGTTTTCGTGCTCGGGGA
CCGGGGTGCTGACCAAGTGGTACGTGCCTCCTGAGGGCCAAGCCCCCCGA
CCTGCTGCCGGCGGCGGCGGCGGCAGGGAGGGCGTTGTTGGAGGGGGGTG
GGGGGACGGCGGCTGGGAGTCGTTGCGGGGGGCGAGGCACCTGTACGAGC
TGCCCTCTCGCTCTGGGATGGTGGGGGTCTGCTACGACGAGACGGCGGAC
ACGGTAGCGGCCGTCAGCAAGCACGGGCACGTGGTGGTCGCTCAGGGGGT
GGCCGGTTTAAGACTGTGAGCGCAAGACGAGAGCAGCGCGGGAGGGGGTT
CCTGGGGCGTGGCATTCCACCCGCGGAGCCCCCGGCACCTGTTTTCGTGC
TCGGGGACCGGGGTGCTGACCAAGTGGTACGTGCCTCCTGAGGGCCAAGC
CCCCCGACCTGCTGCCGGCGGCGGCGGCGGCAGGGAGGGCGTTGTTGGAG
GGGGGTGGGGGGACGGCGGCTGGGAGTCGTTGCGGGGGGCGAGGCACCTG
TACGAGCTGCCCTCTCGCTCTGGGATGGTGGGGGTCTGCTACGACGAGAC
GGCGGACACGGTAGCGGCCGTCAGCAAGCACGGGCACGTGGTGGTCGCTC
AGGGGGTGGCCGGTTTAAGACTGTGA
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