mRNA_E-fasciculatus_F_contig12842.2147.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12842.2147.1
Unique NamemRNA_E-fasciculatus_F_contig12842.2147.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12842.2147.1 vs. uniprot
Match: D8LKM7_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKM7_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 4.010e-45
Identity = 90/97 (92.78%), Postives = 92/97 (94.85%), Query Frame = 3 
Query:    3 INDVEKGYYADGEDAYDMRLPFPLKEQSYGAMTPLKQVVAVKRKEEAPKASAPVTEGGAAVEAREGKGQGGEGGADGVEEIASSMGELSVGAGAEKA 293
            INDVEKGYYADGEDAYDMRLPFP K QSYGAMTPLKQVVAVKRKEEAPKASAPV  GGAAV AREG+GQGGEGGA+GVEEIASSMGELSVGAGAEKA
Sbjct:  132 INDVEKGYYADGEDAYDMRLPFPQKGQSYGAMTPLKQVVAVKRKEEAPKASAPVAAGGAAVAAREGEGQGGEGGAEGVEEIASSMGELSVGAGAEKA 228
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12842.2147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKM7_ECTSI4.010e-4592.78N-acetyltransferase domain-containing protein n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12842contigE-fasciculatus_F_contig12842:657..1805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue9.8e-28
Seed eggNOG ortholog2880.D8LKM7
Preferred nameNAA11
KEGG koko:K20791
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006325,GO:0006464,GO:0006473,GO:0006474,GO:0006475,GO:0006807,GO:0006996,GO:0007276,GO:0007281,GO:0007292,GO:0008080,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0017196,GO:0017198,GO:0018002,GO:0018193,GO:0018200,GO:0018205,GO:0018206,GO:0018209,GO:0018393,GO:0018394,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022626,GO:0030154,GO:0030920,GO:0031248,GO:0031365,GO:0031414,GO:0031415,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034212,GO:0036211,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043543,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0044703,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0051276,GO:0051604,GO:0051704,GO:0061606,GO:0071704,GO:0071840,GO:1901564,GO:1902493,GO:1902494,GO:1990189,GO:1990190,GO:1990234,GO:1990904
EggNOG free text desc.N-terminal peptidyl-glutamic acid acetylation
EggNOG OGsCOG0456@1,KOG3235@2759
Ec32 ortholog descriptionAcetyltransferase (GNAT) domain protein
Ec32 orthologEc-16_003580.1
EC2.3.1.255
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size1149
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12842.2147.1prot_E-fasciculatus_F_contig12842.2147.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12842 710..952 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927788.5684226-UTR-E-fasciculatus_F_contig12842:656..7091622927788.5684226-UTR-E-fasciculatus_F_contig12842:656..709Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12842 657..709 +
1695995694.943393-UTR-E-fasciculatus_F_contig12842:656..7091695995694.943393-UTR-E-fasciculatus_F_contig12842:656..709Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12842 657..709 +
1622927788.589607-UTR-E-fasciculatus_F_contig12842:952..18051622927788.589607-UTR-E-fasciculatus_F_contig12842:952..1805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12842 953..1805 +
1695995694.9742424-UTR-E-fasciculatus_F_contig12842:952..18051695995694.9742424-UTR-E-fasciculatus_F_contig12842:952..1805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12842 953..1805 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927788.5789537-CDS-E-fasciculatus_F_contig12842:709..9521622927788.5789537-CDS-E-fasciculatus_F_contig12842:709..952Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12842 710..952 +
1695995694.9641736-CDS-E-fasciculatus_F_contig12842:709..9521695995694.9641736-CDS-E-fasciculatus_F_contig12842:709..952Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12842 710..952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12842.2147.1

>prot_E-fasciculatus_F_contig12842.2147.1 ID=prot_E-fasciculatus_F_contig12842.2147.1|Name=mRNA_E-fasciculatus_F_contig12842.2147.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=81bp
MRLPFPLKEQSYGAMTPLKQVVAVKRKEEAPKASAPVTEGGAAVEAREGK
GQGGEGGADGVEEIASSMGELSVGAGAEKA*
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mRNA from alignment at E-fasciculatus_F_contig12842:657..1805+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12842.2147.1 ID=mRNA_E-fasciculatus_F_contig12842.2147.1|Name=mRNA_E-fasciculatus_F_contig12842.2147.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1149bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12842:657..1805+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGATCAACGACGTCGAGAAGGGCTACTACGCCGACGGAGAAGACGCGTAC
GACATGCGCCTCCCCTTCCCCCTGAAGGAGCAGTCCTACGGGGCCATGAC
CCCGCTCAAGCAGGTGGTGGCCGTCAAGCGAAAGGAGGAGGCGCCCAAGG
CGTCCGCGCCCGTGACGGAGGGGGGGGCGGCGGTAGAGGCAAGAGAGGGC
AAGGGTCAAGGAGGGGAAGGGGGCGCAGATGGTGTGGAGGAGATCGCGAG
TAGCATGGGGGAGCTGTCGGTAGGTGCGGGTGCTGAAAAGGCATAGCGCG
AGAGAAAAAAAACTTTGACGGGGTTGTGTGAACTACGAGGGCTTTTTTTG
TGTTCATCCTCCTCCGCTACCTGCCGAAAGAAAGCGCGTGTGGTGGTACG
TTTTTATCTTTGTGGAAGGCAGTGTTGTTGTGCTGTGGCCGCTGGTGGTT
TTTAGAGAGTCTACGCAAGAACGTTGAAGAATTGGTGCAATAGATTTTGT
GCGGCACGCAGCATCTTGTGTTGGTAAGGTGATCTTTTTACCGAAACGCA
CGTGTACACCACGATTCTCTGTGTGGCATTGTTGTGCTGTGGCCGCTTGT
GTTTGGATTTTCTAGGCGACAATGTGCAAGATTCGATGCGATTCTACGGC
AGACAATGTGTTGTGTTGGAAACTAATCTTGTTTTAAGCGCTGATGATCT
TGAGAGCTCAGCTGAAGCGTCGGCACCACTGTCTTGTGAGCAGTCTTGCC
AGCGAAGCTCTCAGGGTGGTCCGGGGGGCTGCTAGCGTCGGTGGCTTCGC
AGTTGATAACTACGATAGGCATACCATAGAGTCGGCCGGTGCTCCGGCTT
GTCAAAAGTGGCGTGAAGGCAGGTATTGTAAGTAGAGAGTTTAGCCCGTC
GTCTCGCGATGTTGACGCAGTCGTCCTGAGACGATGTAACGGCTGTAGGG
CAGTAGCCATGCCGGCGAAGGCCCCTGTGGACAGGTTTGCCACAACAAGC
TGTCATCTTTGCGACCTGTGGTCATCAGGTTGTTCCGTCACGCCTGGGTG
TTTATGCTACATCTGCGTTCCAATGTTATTCCACCTTGTAGCATGCTGCT
ACGCTGCCGGGTAGGGACATACACCCAAACAACTGTCTCCACGAGCACC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12842:657..1805+

>mRNA_E-fasciculatus_F_contig12842.2147.1 ID=mRNA_E-fasciculatus_F_contig12842.2147.1|Name=mRNA_E-fasciculatus_F_contig12842.2147.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12842:657..1805+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCCTCCCCTTCCCCCTGAAGGAGCAGTCCTACGGGGCCATGACCCC
GCTCAAGCAGGTGGTGGCCGTCAAGCGAAAGGAGGAGGCGCCCAAGGCGT
CCGCGCCCGTGACGGAGGGGGGGGCGGCGGTAGAGGCAAGAGAGGGCAAG
GGTCAAGGAGGGGAAGGGGGCGCAGATGGTGTGGAGGAGATCGCGAGTAG
CATGGGGGAGCTGTCGGTAGGTGCGGGTGCTGAAAAGGCATAGATGCGCC
TCCCCTTCCCCCTGAAGGAGCAGTCCTACGGGGCCATGACCCCGCTCAAG
CAGGTGGTGGCCGTCAAGCGAAAGGAGGAGGCGCCCAAGGCGTCCGCGCC
CGTGACGGAGGGGGGGGCGGCGGTAGAGGCAAGAGAGGGCAAGGGTCAAG
GAGGGGAAGGGGGCGCAGATGGTGTGGAGGAGATCGCGAGTAGCATGGGG
GAGCTGTCGGTAGGTGCGGGTGCTGAAAAGGCATAG
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