mRNA_E-fasciculatus_F_contig12839.2141.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12839.2141.1
Unique NamemRNA_E-fasciculatus_F_contig12839.2141.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12839.2141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12839contigE-fasciculatus_F_contig12839:111..1395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size546
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12839.2141.1prot_E-fasciculatus_F_contig12839.2141.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12839 111..1156 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927788.1222575-CDS-E-fasciculatus_F_contig12839:110..4131622927788.1222575-CDS-E-fasciculatus_F_contig12839:110..413Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12839 111..413 -
1695995694.612284-CDS-E-fasciculatus_F_contig12839:110..4131695995694.612284-CDS-E-fasciculatus_F_contig12839:110..413Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12839 111..413 -
1622927788.1315331-CDS-E-fasciculatus_F_contig12839:1153..11561622927788.1315331-CDS-E-fasciculatus_F_contig12839:1153..1156Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12839 1154..1156 -
1695995694.6209311-CDS-E-fasciculatus_F_contig12839:1153..11561695995694.6209311-CDS-E-fasciculatus_F_contig12839:1153..1156Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12839 1154..1156 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927788.1445746-UTR-E-fasciculatus_F_contig12839:1156..13951622927788.1445746-UTR-E-fasciculatus_F_contig12839:1156..1395Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12839 1157..1395 -
1695995694.6310399-UTR-E-fasciculatus_F_contig12839:1156..13951695995694.6310399-UTR-E-fasciculatus_F_contig12839:1156..1395Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12839 1157..1395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12839.2141.1

>prot_E-fasciculatus_F_contig12839.2141.1 ID=prot_E-fasciculatus_F_contig12839.2141.1|Name=mRNA_E-fasciculatus_F_contig12839.2141.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=102bp
MARHGSCQGRCHRRHKQDDEQTEPDAVAAAPPPARREPSAPPPEEGPLWR
QWRQRRRRLRRHRLPLVDLAGAAGFALALFLGLRARGSSRENGSGGGGIR
VG
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mRNA from alignment at E-fasciculatus_F_contig12839:111..1395-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12839.2141.1 ID=mRNA_E-fasciculatus_F_contig12839.2141.1|Name=mRNA_E-fasciculatus_F_contig12839.2141.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1285bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12839:111..1395- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTTCGTCCCTCTCGCCCTGTCGTCCCTCTCTCCCTCTCTCCCTGTCTAA
CGCGTCGTCTGTTGTAGTGTAACCTCTTCTTTCTGCTCCGATTTGTTGTC
GTGCACCGGCTCTGCACTTGAGGGCAATCTCGTCCGAGCTGCTGTGCTGT
GCAGAAAAACAGGAGCACATCACAACCGCAGTTTTTCGACCGGATCTCCG
TCGTATAGACACGGCGAACGCGACAGGGGCAGCGGCACAATGGTGAGAGA
GATGCAACACCAAGGTACAACTGTTCTTGTACCACAGCGGTGGTCCGTTG
CATGCAAGTCGTGGCCGACTGCCTCCCACAACTTTACAACATTTGGCTGC
AAGGGGCAACTTTACAACACATGGCTTCCTTGGCCAGTACAAAAGCTGTT
GTGTCGGTTGTTTGAATGCCCAACTCCGTACGTGCTCTTCTGGATTTATG
GCCAGCTTATTAGCGGTTCGGCACACAAACTACGCCCCAGATAACTGTCG
AAACGGTTCGTACAACTCATTCAACCGCACCTTCGACCGCCACTTGCAAG
AGGCGTGGCACGTTTTTTCTGTCCACCAATTGTATTGGAAGTATCTAGCA
GTTTGCAGACGGACGTCTCGGTCCTTGCTAACTAAAGAAGCGGGTGCACA
CACCGTTTGCCGCCAGACCCCGTTGACTAGAAGACATGTTGGCGTTTTTC
GGTCGCGCTTTTAACGAGACCATTGGTCAGCCGATGCGGTTGATGCTATG
TTGCGACACACACGCACATTTTCCCGCTAGTAAGGTCTGATGTCTGACCA
GCTTTGGTCGTTGAGGCATGTATGTATCACGGTCGATGTCAAGTACAGAA
GCACTCGAACACAATGTCATTGAGCTAACGCGGTCGCTGCTAGTATGTAA
AACAATACCCACACGCACAAATTTCCCCCTCCGAACGCCGCCTCACGCGT
CTCTAACAACACGCTGGGGCTCTTCACGACAGGCGCGGCACGGAAGTTGC
CAGGGCCGCTGCCACCGCCGCCACAAACAAGACGACGAACAAACCGAACC
CGACGCGGTCGCTGCAGCGCCGCCGCCGGCAAGACGGGAACCCAGCGCCC
CTCCCCCGGAGGAAGGCCCCCTCTGGCGACAGTGGCGGCAACGGCGGCGG
CGGCTTCGCCGCCACCGCCTACCCTTAGTCGACCTGGCCGGGGCCGCGGG
CTTCGCCCTCGCTCTCTTTCTTGGCCTGCGCGCACGGGGCTCAAGCCGAG
AGAACGGGAGCGGCGGCGGCGGGATCAGGGTTGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12839:111..1395-

>mRNA_E-fasciculatus_F_contig12839.2141.1 ID=mRNA_E-fasciculatus_F_contig12839.2141.1|Name=mRNA_E-fasciculatus_F_contig12839.2141.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12839:111..1395- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGGCGCGGCACGGAAGTTGCCAGGGCCGCTGCCACCGCCGCCACAA
ACAAGACGACGAACAAACCGAACCCGACGCGGTCGCTGCAGCGCCGCCGC
CGGCAAGACGGGAACCCAGCGCCCCTCCCCCGGAGGAAGGCCCCCTCTGG
CGACAGTGGCGGCAACGGCGGCGGCGGCTTCGCCGCCACCGCCTACCCTT
AGTCGACCTGGCCGGGGCCGCGGGCTTCGCCCTCGCTCTCTTTCTTGGCC
TGCGCGCACGGGGCTCAAGCCGAGAGAACGGGAGCGGCGGCGGCGGGATC
AGGGTTGGTGCGCGGCACGGAAGTTGCCAGGGCCGCTGCCACCGCCGCCA
CAAACAAGACGACGAACAAACCGAACCCGACGCGGTCGCTGCAGCGCCGC
CGCCGGCAAGACGGGAACCCAGCGCCCCTCCCCCGGAGGAAGGCCCCCTC
TGGCGACAGTGGCGGCAACGGCGGCGGCGGCTTCGCCGCCACCGCCTACC
CTTAGTCGACCTGGCCGGGGCCGCGGGCTTCGCCCTCGCTCTCTTTCTTG
GCCTGCGCGCACGGGGCTCAAGCCGAGAGAACGGGAGCGGCGGCGGCGGG
ATCAGGGTTGGT
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