mRNA_E-fasciculatus_F_contig12827.2137.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12827.2137.1
Unique NamemRNA_E-fasciculatus_F_contig12827.2137.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12827.2137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12827contigE-fasciculatus_F_contig12827:1456..3564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size443
Cds size174
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12827.2137.1prot_E-fasciculatus_F_contig12827.2137.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12827 1724..3564 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927787.7357109-UTR-E-fasciculatus_F_contig12827:1455..17231622927787.7357109-UTR-E-fasciculatus_F_contig12827:1455..1723Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12827 1456..1723 +
1695995694.2535045-UTR-E-fasciculatus_F_contig12827:1455..17231695995694.2535045-UTR-E-fasciculatus_F_contig12827:1455..1723Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12827 1456..1723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927787.7487514-CDS-E-fasciculatus_F_contig12827:1723..18101622927787.7487514-CDS-E-fasciculatus_F_contig12827:1723..1810Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12827 1724..1810 +
1695995694.264508-CDS-E-fasciculatus_F_contig12827:1723..18101695995694.264508-CDS-E-fasciculatus_F_contig12827:1723..1810Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12827 1724..1810 +
1622927787.7641428-CDS-E-fasciculatus_F_contig12827:3477..35641622927787.7641428-CDS-E-fasciculatus_F_contig12827:3477..3564Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12827 3478..3564 +
1695995694.2753859-CDS-E-fasciculatus_F_contig12827:3477..35641695995694.2753859-CDS-E-fasciculatus_F_contig12827:3477..3564Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12827 3478..3564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12827.2137.1

>prot_E-fasciculatus_F_contig12827.2137.1 ID=prot_E-fasciculatus_F_contig12827.2137.1|Name=mRNA_E-fasciculatus_F_contig12827.2137.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=58bp
MNEELEAGDGRDQRRSSGSGSKRGRRDVEDFGRGDFAEEDYGYDEYGTTS
SAADTPAS
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mRNA from alignment at E-fasciculatus_F_contig12827:1456..3564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12827.2137.1 ID=mRNA_E-fasciculatus_F_contig12827.2137.1|Name=mRNA_E-fasciculatus_F_contig12827.2137.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2109bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12827:1456..3564+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCCAGTGTGCAACGTCAGCAGCATTTACCACGGGCATCAGGGCCGGTT
CGCATCGGTTCACACAACCCAAGAAGCATCGGCGCGAGGACAGAGTAGAT
CGGCCACGGGTGCGTCTTGTCATCAGCCAGGCAAACGCCCACAGGACTGG
GCGGAGAGAGGTCGGGGGGAGGGGAGAGACAGCAGTAGTTGAGAGACGCG
CACGGAGAGGAGGGGAGGTGACAGACAGAGAGATTTGATCCAACGGCGGA
GCAGCGCGAGCGAGCACAATGAACGAAGAGCTCGAGGCGGGCGACGGCCG
GGACCAGCGACGATCTTCAGGGAGTGGTTCCAAGCGAGGGAGGCGGGATG
TAGAGGTAAGAAAGGCGGATGAGGCAGATATTGTAACACAAAATATGCTG
GCGCTCCTCTCTCTGTTTACCAACTTGAACAGACAGACAAGGTTCGTCTT
TGCCGGTTCAAGTCTCTCTCTGTCTCTCTCTTGATGCCTCGCAAAGCACT
CTCCCACAACCCCTTTCTGTAGATCGTCTTTTGTGGTTCGGCGTCGCCAA
AACACACAAGGGTGGCAAAAGGCTCCTCCTGTTGGAGCACAACAACAACC
GAGTCCGAGTAGCACATGTATCGACCCGGCCGGGGCTGCTCATTGCCGTC
GCTGTCATGGCATGGCGACCAGGCGTTTTTTCGTTTTTTCTGTCCGCAAG
AAGACGACAGCCAAAACTTGGCCCGAAACTCAAACAAGCACCAAAACCTG
CTCTCTGCTAGCTATGCACATCACCACCCACACATCATTTTTCAAGACTC
GTCTCTCGGGCATGGTTTCTATAACGTTGTACGAACGAGGAAGAGTTTTA
GCATAGCATTTTTCGTAGCATATCATGTCGTGTTGTGTTTGTGTTGTGTT
CTGTTGTGAGAGCTCTGCGGACAAGGGAGGGAGAGACAGCACTAAAGCTA
GGAGAGAGGTGCATCCGCGGCATGACCGGCATGAACAGCAGTGTTCCGTG
TGGAAGGGTGACGTGTTGCGTGGGACGTTTAATTGTGCTTTGTGGTCTAT
ATCCGAGATGTCTAGGGCGAGTCGAACCTTCCGGCCTACTGCTGTATTAC
GAGCCCCGACCCGGAGTGGTGGCAGATTGTCTACACCAGATTTAAGATCC
TTCTGGCAGGCTTACAAGTAGTTACTCAGATGTGCCGCTCTGGCCGTACT
ATGGATGTGCGGCAGTCAAACACAGCGGCGCAAAGCTTGGATCCGAACAT
CCACACCAAACCTTTGCCGTGCTCCGTGTACAGGGTGGCCGTGGTGGGCC
GGGGGTTTTGACTGCTGGCTACGTTGTTCGCCGCTACGCATATTAGCCCC
CCTCGCTGCGGGTGCTCCGAGGAGGCTAAATTAGCGGTCTACACCAGCAC
CGCAACAATCAACGAATCACCGATGAGCAAACTCGGTAATTTCGAAGTGT
TTCTTTCTACATGGAAGATCCGGAAAAATGTTGTTGCGCCTCGCCATCAC
GTGGCGAAAAGGCCGGCGGCAATCGGGCTGAGCAGCTCTCTCGCTGCTGG
CATACATCTACATTTGTACATAAACGCAACGAATTAATATCTTATCTTAT
CCACAGAGAAGCGTCCGGGATAAACTACAGCAGCAGTAGTTACAATGGAT
CCCGACTCTAGCGCGCACGCCATGTACAGCATTTACCGCCGTGTGTCACG
TCTTGTGTTTTTTTCCTCCTTCTTGTTTTCGAGAATCACACCGAACGAAT
GCATCTCCTAATTATTCGGTACATATCCCGCTCTGGCGGGACTGAAGATG
ACGAAAATGTTAAATGTTAATGTTGTTGCGCCTCCGGTAACACGTGGCCA
AGGGGGTCGGTCGGCTGGAGACTAGACCAGAAGGCTGTGCAGGTTTTTTA
CAGGCATTTCCTTTTTTTTCTTTTCGAGCAAAAAGAAAAAACGCAAGTGC
AGCTGTATCTATTAATAGCAGTACCAGCAGTAGCATCCACGATCAACGAC
AACGTCATTGCTCATGATACAGGATTTCGGTCGGGGCGATTTCGCGGAGG
AAGACTATGGATATGACGAGTACGGCACCACCAGCAGCGCCGCGGACACG
CCAGCCTCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12827:1456..3564+

>mRNA_E-fasciculatus_F_contig12827.2137.1 ID=mRNA_E-fasciculatus_F_contig12827.2137.1|Name=mRNA_E-fasciculatus_F_contig12827.2137.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=348bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12827:1456..3564+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACGAAGAGCTCGAGGCGGGCGACGGCCGGGACCAGCGACGATCTTC
AGGGAGTGGTTCCAAGCGAGGGAGGCGGGATGTAGAGATGAACGAAGAGC
TCGAGGCGGGCGACGGCCGGGACCAGCGACGATCTTCAGGGAGTGGTTCC
AAGCGAGGGAGGCGGGATGTAGAGGATTTCGGTCGGGGCGATTTCGCGGA
GGAAGACTATGGATATGACGAGTACGGCACCACCAGCAGCGCCGCGGACA
CGCCAGCCTCAGATTTCGGTCGGGGCGATTTCGCGGAGGAAGACTATGGA
TATGACGAGTACGGCACCACCAGCAGCGCCGCGGACACGCCAGCCTCA
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