mRNA_E-fasciculatus_F_contig12822.2134.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12822.2134.1 vs. uniprot
Match: D7G1M9_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M9_ECTSI) HSP 1 Score: 544 bits (1402), Expect = 4.540e-189 Identity = 272/300 (90.67%), Postives = 277/300 (92.33%), Query Frame = 1
Query: 1 RMCNIAMSNAAGLRVSRALHPSMAVAAIVAKRIARGQKGRDQR--------------------VQVAEELALSLAEMQFVCAYWLLYLVPHTQKWPANVERHAREVQAHLSALRSLCRGLLERVRIGPDPLEGGAGAGGDWRQIRAENRLRGLRGRDEIVAREQRCVMCMVNTQPNGEDGKEYLPMVCKGCGMKRHGGCQWMCARSSVCGLCEQSDVLREFVSNNDMAAVHQKLLEWPGASPFWIPNPIPGFSARDELVRQSTSLHEAARSGRYEVLSMLLHHCRGRGLLPGACLVPDGN 840
RMCNIAMSNAAGLRVSRALHPSMAVAAIVAKRIARGQKGRDQR VQVAEELALSLAEMQFVCAYWLLYLVPHTQKWPANVERHAREVQAHLSALRSLCRGLLERVRIGPDPLEG AGAGGDW+QIRAENRLRGLRGRDEI+ARE+RCVMCMV+TQPNGEDGKEYLPMVCKGCGMKRHGGCQWMC RSSVCGLCEQSDVLREFVSNNDMAAVHQKLLEWPGASPFWIPNPIPGFSA DELVRQSTSLHEAAR+GRYEVLSMLLHHCRGRGLLPGACLVPDGN
Sbjct: 151 RMCNIAMSNAAGLRVSRALHPSMAVAAIVAKRIARGQKGRDQRKVLGVGGGGVTCLRLSRERRVQVAEELALSLAEMQFVCAYWLLYLVPHTQKWPANVERHAREVQAHLSALRSLCRGLLERVRIGPDPLEG-AGAGGDWKQIRAENRLRGLRGRDEIIAREERCVMCMVHTQPNGEDGKEYLPMVCKGCGMKRHGGCQWMCVRSSVCGLCEQSDVLREFVSNNDMAAVHQKLLEWPGASPFWIPNPIPGFSAGDELVRQSTSLHEAARNGRYEVLSMLLHHCRGRGLLPGACLVPDGN 449
BLAST of mRNA_E-fasciculatus_F_contig12822.2134.1 vs. uniprot
Match: A0A6H5J768_9PHAE (PHD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J768_9PHAE) HSP 1 Score: 409 bits (1051), Expect = 6.450e-139 Identity = 202/209 (96.65%), Postives = 206/209 (98.56%), Query Frame = 1
Query: 1 RMCNIAMSNAAGLRVSRALHPSMAVAAIVAKRIARGQKGRDQRVQVAEELALSLAEMQFVCAYWLLYLVPHTQKWPANVERHAREVQAHLSALRSLCRGLLERVRIGPDPLEGGAGAGGDWRQIRAENRLRGLRGRDEIVAREQRCVMCMVNTQPNGEDGKEYLPMVCKGCGMKRHGGCQWMCARSSVCGLCEQSDVLREFVSNNDMAA 627
RMCNIAMSNAAGLRVSRALHPSMAVAAIVAKRIARGQKGRDQRVQVAEELALSLAEMQFVCAYWLLYLVPHTQKWPANVERHAREVQAHLSALRSLCRGLLERVRIGPDPLEG AGAGGDW+QIR ENRLRGLRGRDEI+ARE+RCVMCMV+TQPNGEDGKEYLPMVCKGCGMKRHGGCQWMC RSSVCGLCEQSDVLREFVSNNDMAA
Sbjct: 277 RMCNIAMSNAAGLRVSRALHPSMAVAAIVAKRIARGQKGRDQRVQVAEELALSLAEMQFVCAYWLLYLVPHTQKWPANVERHAREVQAHLSALRSLCRGLLERVRIGPDPLEG-AGAGGDWKQIRTENRLRGLRGRDEIIAREERCVMCMVHTQPNGEDGKEYLPMVCKGCGMKRHGGCQWMCVRSSVCGLCEQSDVLREFVSNNDMAA 484
BLAST of mRNA_E-fasciculatus_F_contig12822.2134.1 vs. uniprot
Match: A0A6H5KJ27_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ27_9PHAE) HSP 1 Score: 155 bits (391), Expect = 5.550e-40 Identity = 86/155 (55.48%), Postives = 105/155 (67.74%), Query Frame = 1
Query: 388 LRGLRGRDEIVAREQRCVMCM---VNTQPNGEDGKEYLPMVCKGCGMKRHGGCQWMCARSSVCGLCEQSDVLREFVSNNDMA-AVHQKLLEWPGASPFWIPNPIPGFSARDELVRQSTSLHEAARSGRYEVLSMLLHHCRGRGLLPGACLVPDGN 840
L+G + + +V RE+R + + ++G E M+ +G G K ++ R L + +E ++ D + +VHQKLLEWPGASPFWIPNPIPGFSARDELVRQSTSLHEAAR GRYEVLSMLLHHCRGRGLLPGACLVPDGN
Sbjct: 6 LQGFKEKISVVCRERRTEEKEEQNLRKESKDKEGLEVYGMLKEGVGFK-----DYLHXRLGKTFLSQLWQSRKERLAIGDRSCSVHQKLLEWPGASPFWIPNPIPGFSARDELVRQSTSLHEAARKGRYEVLSMLLHHCRGRGLLPGACLVPDGN 155 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12822.2134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12822.2134.1 >prot_E-fasciculatus_F_contig12822.2134.1 ID=prot_E-fasciculatus_F_contig12822.2134.1|Name=mRNA_E-fasciculatus_F_contig12822.2134.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=279bp MCNIAMSNAAGLRVSRALHPSMAVAAIVAKRIARGQKGRDQRVQVAEELAback to top mRNA from alignment at E-fasciculatus_F_contig12822:37..3428+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12822.2134.1 ID=mRNA_E-fasciculatus_F_contig12822.2134.1|Name=mRNA_E-fasciculatus_F_contig12822.2134.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3392bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12822:37..3428+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12822:37..3428+ >mRNA_E-fasciculatus_F_contig12822.2134.1 ID=mRNA_E-fasciculatus_F_contig12822.2134.1|Name=mRNA_E-fasciculatus_F_contig12822.2134.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1674bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12822:37..3428+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |